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At least 397 records · Page 22

Oversight and Development of a Community Monte Carlo Radiative Transfer Model

Under this grant we have developed a Monte Carlo radiative transfer code that will act as the nucleus for the 13RC Community Monte Carlo Model. All code is written in ANSI-compliant Fortran-95. Many modules define public type and procedures to manipulate them, but do not allow access to the type's internal components. This allows each module to do its own exhaustive error checking up-front, then proceed in a streamlined way. Many modules can read and write the state of their objects to persistent files. The code has been tested on a Macintosh running OS 10.2.4 and the Absoft Fortran compiler, and on Sun UltraSparcs running Solaris 5.8 and Forte V8 compilers. The code exposed bugs in the Intel Fortran Compiler (ifc) on the 13RC Linux host, and we are waiting for a resolution of these bugs before finished the port. the code base is under CVS versions control. The code base consists of the core code (nine modules providing the infrastructure), example integrators, and a suite of utilities and examples.

Source record↗

Wildfires Dynamics in Mid-Siberian Larch Dominated Communities

The longterm wildfire dynamics, including fire return interval (FRI), in Siberian larch communities were examined. A wildfire chronology encompassing the 15th through the 20th centuries was developed from analyzing tree stem fire scars. Two methods were used to calculate the time interval between fires: 1) direct counting of annual tree growth rings between stem fire scars and 2) the next earlier fire date was estimated from growth ring analysis and added to the first estimate. Average FRI determined from stem fire scar dating was 82 plus or minus 7 using Method I or 95 plus or minus 7 when age of the next earlier fire was inferred from observed larch regeneration structure (Method II). FRI was also found to be dependent on site topography. FRI on north-east facing slopes was 86 plus or minus 11 years (105 plus or minus 12). FRI on south-west facing slopes was significantly less at 61 plus or minus 8 (73 plus ot minus 8) years. Flat terrain showed little difference between methods 68 plus or minus 14 (70 plus or minus 13). This was also the case for bogs, but FRI was much longer; 139 plus or minus 17 (138 plus ot minus 18). The maximum number of annual fires occurred with periods of 36 and 82 years on average. The temporal trend in the FRI decreased from 101 years in the 19 th century to 65 years in the 20th century. The effect of post-fire forest recovery on depth to permafrost was also estimated. After initial melting from increased local temperatures permafrost depth decreased at a rate of 0.3 cm/yr on average as forest canopies developed.

Kharuk, V. I.↗

Implementation of the NCAR Community Land Model (CLM) in the NASA/NCAR finite-volume Global Climate Model (fvGCM)

In this study, the NCAR CLM version 2.0 land-surface model was integrated into the NASA/NCAR fvGCM. The CLM was developed collaboratively by an open interagency/university group of scientists and based on well-proven physical parameterizations and numerical schemes that combine the best features of BATS, NCAR-LSM, and IAP94. The CLM design is a one-dimensional point model with 1 vegetation layer, along with sub-grid scale tiles. The features of the CLM include 10-uneven soil layers with water, ice, and temperature states in each soil layer, and five snow layers, with water flow, refreezing, compaction, and aging allowed. In addition, the CLM utilizes two-stream canopy radiative transfer, the Bonan lake model and topographic enhanced streamflow based on TOPMODEL. The DAO fvGCM uses a genuinely conservative Flux-Form Semi-Lagrangian transport algorithm along with terrain- following Lagrangian control-volume vertical coordinates. The physical parameterizations are based on the NCAR Community Atmosphere Model (CAM-2). For our purposes, the fvGCM was run at 2 deg x 2.5 deg horizontal resolution with 55 vertical levels. The 10-year climate from the fvGCM with CLM2 was intercompared with the climate from fvGCM with LSM, ECMWF and NCEP. We concluded that the incorporation of CLM2 did not significantly impact the fvGCM climate from that of LSM. The most striking difference was the warm bias in the CLM2 surface skin temperature over desert regions. We determined that the warm bias can be partially attributed to the value of the drag coefficient for the soil under the canopy, which was too small resulting in a decoupling between the ground surface and the canopy. We also discovered that the canopy interception was high compared to observations in the Amazon region. A number of experiments were then performed focused on implementing model improvements. In order to correct the warm bias, the drag coefficient for the soil under the canopy was considered a function of LAI (Leaf Area Index). Analysis of the results revealed that there was a substantial impact, and the warm and dry bias in the CLM2 was significantly reduced. For the interception scheme, the canopy throughfall was increased to allow for more infiltration of precipitation into the soil, resulting in increased low-level moisture and a decrease in the interception loss ratio (canopy evaporation to precipitation).

Radakovich, Jon D.↗

Community-level physiological profiling performed with an oxygen-sensitive fluorophore in a microtiter plate

Community-level physiological profiling based upon fluorometric detection of oxygen consumption was performed on hydroponic rhizosphere and salt marsh litter samples by using substrate levels as low as 50 ppm with incubation times between 5 and 24 h. The rate and extent of response were increased in samples acclimated to specific substrates and were reduced by limiting nitrogen availability in the wells.

NASA Discipline Life Support Systems↗

Hydrogen in rocks: an energy source for deep microbial communities

To survive in deep subsurface environments, lithotrophic microbial communities require a sustainable energy source such as hydrogen. Though H2 can be produced when water reacts with fresh mineral surfaces and oxidizes ferrous iron, this reaction is unreliable since it depends upon the exposure of fresh rock surfaces via the episodic opening of cracks and fissures. A more reliable and potentially more voluminous H2 source exists in nominally anhydrous minerals of igneous and metamorphic rocks. Our experimental results indicate that H2 molecules can be derived from small amounts of H2O dissolved in minerals in the form of hydroxyl, OH- or O3Si-OH, whenever such minerals crystallized in an H2O-laden environment. Two types of experiments were conducted. Single crystal fracture experiments indicated that hydroxyl pairs undergo an in situ redox conversion to H2 molecules plus peroxy links, O3Si/OO\SiO3. While the peroxy links become part of the mineral structure, the H2 molecules diffused out of the freshly fractured mineral surfaces. If such a mechanism occurred in natural settings, the entire rock column would become a volume source of H2. Crushing experiments to facilitate the outdiffusion of H2 were conducted with common crustal igneous rocks such as granite, andesite, and labradorite. At least 70 nmol of H2/g diffused out of coarsely crushed andesite, equivalent at standard pressure and temperature to 5,000 cm3 of H2/m3 of rock. In the water-saturated, biologically relevant upper portion of the rock column, the diffusion of H2 out of the minerals will be buffered by H2 saturation of the intergranular water film.

Hydrogen/analysis↗

Characterizing photosynthesis and transpiration of plant communities in controlled environments

CO2 and water vapor fluxes of hydroponically grown wheat and soybean canopies were measured continuously in several environments with an open gas exchange system. Canopy CO2 fluxes reflect the photosynthetic efficiency of a plant community, and provide a record of plant growth and health. There were significant diurnal fluctuations in root and shoot CO2 fluxes, and in shoot water vapor fluxes. Canopy stomatal conductance (Gc) to water vapor was calculated from simultaneous measurements of canopy temperature (Tcan) and transpiration rates (Tr). Tr in the dark was substantial, and there were large diurnal fluctuations in both Gc and Tr. Canopy net Photosynthesis (Pnet), Tr, and Gc increased with increasing net radiation. Gc increased with Tr, suggesting that the stomata of plants in controlled environments (CEs) behave differently from field-grown plants. A transpiration model based on measurements of Gc was developed for CEs. The model accurately predicted Tr from a soybean canopy.

NASA Discipline Life Support Systems↗

Optical properties of benthic photosynthetic communities: fiber-optic studies of cyanobacterial mats

A fiber-optic microphobe was used to analyze the spectral light gradients in benthic cyanobacterial mats with 50-micrometer depth resolution and 10-nm spectral resolution. Microcoleus chthononplastes mats were collected from hypersaline, coastal ponds at Guerrero Negro, Baja California. Gradients of spectral radiance, L, were measured at different angles through the mats and the spherically integrated scalar irradiance, Eo, was calculated. Maximal spectral light attenuation was found at the absorption peaks for the dominant photosynthetic pigments: chlorophyll a at 430 and 670 nm, carotenoids at 450-500 nm, phycocyanin at 620 nm, and bacteriochlorophyll a at 800-900 nm. Scattered light had a marked spectral effect on the scalar irradiance which near the mat surface reached up to 190% of the incident irradiance. The spherically integrated irradiance thus differed strongly from the incident irradiance both in total intensity and in spectral composition. These basic optical properties are important for the understanding of photosynthesis and light harvesting in benthic and epiphytic communities.

NASA Center ARC↗

Making NASA Earth Observing System Satellite Data Accessible to the K-12 and Citizen Scientist Communities

The Atmospheric Sciences Data Center (ASDC) at NASA s Langley Research Center houses over 700 data sets related to Earth s radiation budget, clouds, aerosols and tropospheric chemistry. These data sets are produced to increase academic understanding of the natural and anthropogenic perturbations that influence global climate change. The Mentoring and inquirY using NASA Data on Atmospheric and earth science for Teachers and Amateurs (MY NASA DATA) project has been established to systematically support educational activities at all levels of formal and informal education by reducing these large data holdings to microsets that will be easily explored and understood by the K-12 and the amateur scientist communities

Moore, Susan W.↗

Assessment of changes in microbial community structure during operation of an ammonia biofilter with molecular tools

Biofiltration has been used for two decades to remove odors and various volatile organic and inorganic compounds in contaminated off-gas streams. Although biofiltration is widely practiced, there have been few studies of the bacteria responsible for the removal of air contaminants in biofilters. In this study, molecular techniques were used to identify bacteria in a laboratory-scale ammonia biofilter. Both 16S rRNA and ammonia monooxygenase (amoA) genes were used to characterize the heterotrophic and ammonia-oxidizing bacteria collected from the biofilter during a 102-day experiment. The overall diversity of the heterotrophic microbial population appeared to decrease by 38% at the end of the experiment. The community structure of the heterotrophic population also shifted from predominantly members of two subdivisions of the Proteobacteria (the beta and gamma subdivisions) to members of one subdivision (the gamma subdivision). An overall decrease in the diversity of ammonia monooxygenase genes was not observed. However, a shift from groups dominated by organisms containing Nitrosomonas-like and Nitrosospira-like amoA genes to groups dominated by organisms containing only Nitrosospira-like amoA genes was observed. In addition, a new amoA gene was discovered. This new gene is the first freshwater amoA gene that is closely affiliated with Nitrosococcus oceanus and the particulate methane monooxygenase gene from the methane oxidizers belonging to the gamma subdivision of the Proteobacteria.

NASA Discipline Life Support Systems↗

Coupling the Community Atmospheric Model (CAM) with the Statistical Spectral Interpolation (SSI) System under ESMF

The first set of interoperability experiments illustrates the role ESMF can play in integrating the national Earth science resources. Using existing data assimilation technology from NCEP and the National Weather Service, the Community Atmosphere Model (CAM) was able to ingest conventional and remotely sensed observations, a capability that could open the door to using CAM for weather as well as climate prediction. CAM, which includes land surface capabilities, was developed by NCAR, with key components from GSFC. In this talk we will describe the steps necessary for achieving the coupling of these two systems.

daSilva, Arlindo↗

From Surface Chlorophyll a to Phytoplankton Community Composition in Oceanic Waters

The objective of the present study is to examine the potential of using the near-surface total chlorophyll a concentration (C(sub surf)), as it can be derived from ocean color observation, to infer the column-integrated and the vertical distribution of the phytoplanktonic biomass, both in a quantitative way and in a qualitative way (z.e., in terms of community structure). Within this context, a large HPLC (High Performance Liquid Chromatography) pigment database has been analyzed. It includes 2419 vertical pigment profiles, all sampled in Case-1 waters with various trophic states. The relationshps between C(sub surf) and the total chlorophyll alpha vertical distribution, as previously derived by Morel and Berthon, are fully confirmed, as the present results coincide with the previous ones. This agreement allows to go further, namely to examine the possibility of extracting relationships between C(sub surf) and the vertical composition of the algal assemblages. Thanks to the detailed pigment composition available from HPLC measurements, the contribution of three size classes (micro-, nano-, and pico-phytoplankton) to the local total chlorophyll a concentration can be assessed. Corroborating previous findings (e.g., large species dominate in eutrophc environments, whereas tiny phytoplankton prevail in oligotrophic zones), the results lead to a statistically based parameterization. The predictive skill of this parameterization is successfully tested on a separate data set. With such a tool, the vertical total chlorophyll a profiles associated with each size class can be inferred from the sole knowledge of C(sub surf). By combining this tool with satellite ocean color data, it becomes conceivable to quantify on a global scale the phytoplankton biomass associated with each of the three size classes.

Uitz, Julia↗

Biodiversity within hot spring microbial mat communities: molecular monitoring of enrichment cultures

We have begun to examine the basis for incongruence between hot spring microbial mat populations detected by cultivation or by 16S rRNA methods. We used denaturing gradient gel electrophoresis (DGGE) to monitor enrichments and isolates plated therefrom. At near extincting inoculum dilutions we observed Chloroflexus-like and cyanobacterial populations whose 16S rRNA sequences have been detected in the 'New Pit' Spring Chloroflexus mat and the Octopus Spring cyanobacterial mat. Cyanobacterial populations enriched from 44 to 54 degrees C and 56 to 63 degrees C samples at near habitat temperatures were similar to those previously detected in mat samples of comparable temperatures. However, a lower temperature enrichment from the higher temperature sample selected for the populations found in the lower temperature sample. Three Thermus populations detected by both DGGE and isolation exemplify even more how enrichment may bias our view of community structure. The most abundant population was adapted to the habitat temperature (50 degrees C), while populations adapted to 65 degrees C and 70 degrees C were 10(2)- and 10(4)-fold less abundant, respectively. However, enrichment at 70 degrees C favored the least abundant strain. Inoculum dilution and incubation at the habitat temperature favored the more numerically relevant populations. We enriched many other aerobic chemoorganotrophic populations at various inoculum dilutions and substrate concentrations, most of whose 16S rRNA sequences have not been detected in mats. A common feature of numerically relevant cyanobacterial, Chloroflexus-like and aerobic chemorganotrophic populations, is that they grow poorly and resist cultivation on solidified medium, suggesting plating bias, and that the medium composition and incubation conditions may not reflect the natural microenvironments these populations inhabit.

Non-NASA Center↗

Supporting the GLAST User Community

The Gamma-ray Large Area Space Telescope (GLAST) Science Support Center (GSSC) is the scientific community's interface with GLAST. The GSSC will provide data, analysis software and documentation. In addition, the GSSC will administer the guest investigator program for NASA HQ. Consequently, the GSSC will provide proposal preparation tools to assist proposers in assessing the feasibility of observing sources of interest.

Band, David L.↗

Data Format Standardization of Space Weather Model Output at the Community Coordinated Modeling Center

The disparate nature of space weather model output provides many challenges with regards to the portability and reuse of not only the data itself, but also any tools that are developed for analysis and visualization. We are developing and implementing a comprehensive data format standardization methodology that allows heterogeneous model output data to be stored uniformly in any common science data format. We will discuss our approach to identifying core meta-data elements that can be used to supplement raw model output data, thus creating self-descriptive files. The meta-data should also contain information describing the simulation grid. This will ultimately assists in the development of efficient data access tools capable of extracting data at any given point and time. We will also discuss our experiences standardizing the output of two global magnetospheric models, and how we plan to apply similar procedures when standardizing the output of the solar, heliospheric, and ionospheric models that are also currently hosted at the Community Coordinated Modeling Center.

Maddox, M.↗

Synthesis of Virtual Environments for Aircraft Community Noise Impact Studies

A new capability has been developed for the creation of virtual environments for the study of aircraft community noise. It is applicable for use with both recorded and synthesized aircraft noise. When using synthesized noise, a three-stage process is adopted involving non-real-time prediction and synthesis stages followed by a real-time rendering stage. Included in the prediction-based source noise synthesis are temporal variations associated with changes in operational state, and low frequency fluctuations that are present under all operating conditions. Included in the rendering stage are the effects of spreading loss, absolute delay, atmospheric absorption, ground reflections, and binaural filtering. Results of prediction, synthesis and rendering stages are presented.

Rizzi, Stephen A.↗

Reduced-Noise Gas Flow Design Guide Developed as a Noise-Control Design Tool for Meeting Glenn's Hearing Conservation and Community Noise Goals

A Reduced-Noise Gas Flow Design Guide has been developed for the NASA Glenn Research Center at Lewis Field by Nelson Acoustical Engineering of Elgin, Texas. Gas flow systems are a significant contributor to t he noise exposure landscape at Glenn. Because of the power of many of these systems, hearing conservation and community noise are importan t issues. The purpose of the Guide is to allow Glenn engineers and de signers to address noise emission and control at the design stage by using readily available system parameters. Although the Guide was deve loped with Glenn equipment and systems in mind, it is expected to hav e wide application in industry.

Cooper, Beth A.↗

Population dynamics of transgenic strain Escherichia coli Z905/pPHL7 in freshwater and saline lake water microcosms with differing microbial community structures

Populations of Escherichia coli Z905/pPHL7, a transgenic microorganism, were heterogenic in the expression of plasmid genes when adapting to the conditions of water microcosms of various mineralization levels and structure of microbial community. This TM has formed two subpopulations (ampicillin-resistant and ampicillin-sensitive) in every microcosm. Irrespective of mineralization level of a microcosm, when E. coli Z905/pPHL7 alone was introduced, the ampicillin-resistant subpopulation prevailed, while introduction of the TM together with indigenous bacteria led to the dominance of the ampicillin-sensitive subpopulation. A high level of lux gene expression maintained longer in the freshwater microcosms than in sterile saline lake water microcosms. A horizontal gene transfer has been revealed between the jointly introduced TM and Micrococcus sp. 9/pSH1 in microcosms with the Lake Shira sterile water. c2005 COSPAR. Published by Elsevier Ltd. All rights reserved.

Ecosystem↗

The Biogeochemistry of Benthic Photosynthetic Communities

This lecture presentation discusses microbial mats are our earliest, and most pervasive evidence of life on Earth. In addition to their importance as the crucible of microbial evolution on Earth, microbial mats may be important in our search for life outside of our solar system. This lecture will introduce various types of microbial mats, and their fossilized counterparts, stromatolites by presenting examples of these communities. Biogeochemical cycles important in microbial mats will be introduced and discussed.

Bebout, Brad↗