Results for “model species” — Page 21

NASA NTRSDate not supplied

A Computational Study of Plume Modeling for Space Launch System Abort Scenarios

A series of viscous CFD simulations depicting Space Launch System (SLS) post Mode-1abort scenarios are conducted and analyzed. The primary purpose of these simulations is to study the effect of launch abort vehicle attitude control motor (ACM) and abort motor(AM) plume modeling fidelity on the drag of the aborted core stage. The simulations are first conducted with a fully-coupled, multi-species and chemically reacting model for the freestream gases and the solid rocket abort motor combustion products. Following this, equivalent species are created for the ACM and AM exhaust gases. These equivalent species aim to provide near the same results for core stage drag as the chemically reacting model at a significantly lower computational cost. Finally, the exhaust gases are modeled as calorically perfect air. It was concluded that under most scenarios, both the equivalent species and the perfect air models predict the drag of the aborted core stage sufficiently close to that predicted by the chemically reacting simulations. In these cases, the flow and geometry conditions did not induce significant changes in the composition of the ‘true’ exhaust gas via afterburning of the combustion products. For cases where this was not the case, the properties of the essentially frozen equivalent species and perfect air models deviated from the true mixture, yielding unsatisfactory results. Finally, the accuracy improvements by using the chemically reacting model are weighed against the significant increase in associated computational costs. It was found that the simplified exhaust gas models are at least 4 times less expensive than the chemically reacting model. This may justify the judicious use of these simple models in future work.

CFD↗

NASA NTRSDate not supplied

A Computational Study of Plume Modeling for Space Launch System Abort Scenarios

A series of viscous CFD simulations depicting Space Launch System (SLS) post Mode-1abort scenarios are conducted and analyzed. The primary purpose of these simulations is to study the effect of launch abort vehicle attitude control motor (ACM) and abort motor(AM) plume modeling fidelity on the drag of the aborted core stage. The simulations are first conducted with a fully-coupled, multi-species and chemically reacting model for the freestream gases and the solid rocket abort motor combustion products. Following this, equivalent species are created for the ACM and AM exhaust gases. These equivalent species aim to provide near the same results for core stage drag as the chemically reacting model at a significantly lower computational cost. Finally, the exhaust gases are modeled as calorically perfect air. It was concluded that under most scenarios, both the equivalent species and the perfect air models predict the drag of the aborted core stage sufficiently close to that predicted by the chemically reacting simulations. In these cases, the flow and geometry conditions did not induce significant changes in the composition of the ‘true’ exhaust gas via afterburning of the combustion products. For cases where this was not the case, the properties of the essentially frozen equivalent species and perfect air models deviated from the true mixture, yielding unsatisfactory results. Finally, the accuracy improvements by using the chemically reacting model are weighed against the significant increase in associated computational costs. It was found that the simplified exhaust gas models are at least 4 times less expensive than the chemically reacting model. This may justify the judicious use of these simple models in future work.

CFD↗

NASA NTRS2011

An Extended View of Mars Ozone

We present an ongoing effort to characterize chemistry in Mars' atmosphere in multiple seasons on timescales longer than flight missions through coordinated efforts by GSFC's HIPWAC spectrometer and Mars Express SPICAM, archival measurements, and tests/application of photochemical models. The trace species ozone (O3) is an effective probe of atmospheric chemistry because it is destroyed by chemically active odd hydrogen species (HO(sub x)) that result from water vapor photolysis. Observed ozone abundance on Mars is a critical test for three-dimensional photochemistry coupled general circulation models (GCM) that make specific predictions for the spatial, diurnal, and seasonal behavior of ozone and related chemistry and climatological conditions. Coordinated measurements by HIPWAC and SPICAM quantitatively linked mission data to the 23-year GSFC ozone data record and also revealed unanticipated inter-decadal variability of same-season ozone abundances, a possible indicator of changing cloud activity (heterogeneous sink for HO(sub x)). A detailed study of long-term conditions is critical to characterizing the predictability of Mars' seasonal chemical behavior, particularly in light of the implications of and the lack of explanation for reported methane behavior.

Fast, Kelly↗

DOE OSTI2026

Data for FUN-PROSE: A Deep Learning Approach to Predict Condition-Specific Gene Expression in Fungi

mRNA levels of all genes in a genome is a critical piece of information defining the overall state of the cell in a given environmental condition. Being able to reconstruct such condition-specific expression in fungal genomes is particularly important to metabolically engineer these organisms to produce desired chemicals in industrially scalable conditions. Most previous deep learning approaches focused on predicting the average expression levels of a gene based on its promoter sequence, ignoring its variation across different conditions. Here we present FUN-PROSE—a deep learning model trained to predict differential expression of individual genes across various conditions using their promoter sequences and expression levels of all transcription factors. We train and test our model on three fungal species and get the correlation between predicted and observed condition-specific gene expression as high as 0.85. We then interpret our model to extract promoter sequence motifs responsible for variable expression of individual genes. We also carried out input feature importance analysis to connect individual transcription factors to their gene targets. A sizeable fraction of both sequence motifs and TF-gene interactions learned by our model agree with previously known biological information, while the rest corresponds to either novel biological facts or indirect correlations.

Genomics↗

DOE OSTI2020

Development of a high temperature pyrolysis mechanism for cyclopentanone, a potential biofuel derived from biomass

Cyclopentanone (CPO) is a promising biofuel for spark-ignition engines due to its ring strain and high auto-ignition resistance. The Department of Energy has identified CPO as a potential biofuel candidate because of its unique chemical properties. Understanding CPO decomposition is crucial to building a high-temperature combustion model. In this study, we present a comprehensive kinetic model for high-temperature pyrolysis of CPO with verified results from high-pressure shock tube (HPST) measurements. The time histories of carbon monoxide (CO), ethylene (C2H4), and CPO absorbances over the temperature range of 1156-1416 K and 8.53-10.06 atm were measured. A corresponding kinetic model was generated using the Reaction Mechanism Generator (RMG) with the parameters of dominant pathways from either previous studies or quantum calculation within current work. The final model containing 821 species and 79,859 reactions exhibited a good agreement with the experimental results. In this study, the C2H4/CO ratio was used as an essential factor to validate the model and to prove that radical-involved bimolecular pathways were as significant as unimolecular decomposition of CPO. The rate of production (ROP) analysis showed that H radicals play major roles in both primary reactions and product pyrolysis. The insights from this work can be used to generate a better CPO combustion model and help evaluate CPO as a biofuel. Such understanding can also be helpful when proposing pyrolysis or combustion models for other biofuels.

cyclopentanone, reaction mechanism, pyrolysis, sho↗

NASA NTRS1996

Utilization of STRAT Data

One of the goals of the STRAT mission was to improve our understanding of transport in the stratosphere. We have used our coupled 2-D model to analyse transport between the tropics and midlatitudes using aircraft measurements of (CO2) and (N2O) made during the SPADE and ASHOE/MAESA campaigns (Boering et al. 1994) for model validation. We have further used the model to estimate errors in the experimental determination of the age of stratospheric air that arise from nonlinear increases of real tracers such as (CO2) and (SF6). The interpretation of measurements made during STRAT is still in progress. Most of the work performed under this contract has been described in the second year progress report, submitted in April of 1996. In the following, the research is summarized and some additional work that has become relevant in the meantime is described. We have developed an interactive model of the dynamics, chemistry and radiation of the stratosphere with partial support from this contract. The dynamics module integrates the primitive equations on a sphere. Lower boundary zonal winds and eddy geopotential heights are specified from observations. Chemistry and tracer transport are done in two dimensions. The chemistry model is a family model. Long lived species are transported and short lived species are determined in intervals of 5 to 10 days by assuming photochemical steady state. Full diurnal integrations with the fast species are performed periodically and diurnal coefficients, derived from the explicit integration are used to determine the steady state solution. Heating rates in the stratosphere are calculated from model ozone and the model temperatures and circulation fields are used in the chemistry transport module.

Source record↗

NASA NTRS2009

Comparisons of Air Radiation Model with Shock Tube Measurements

This paper presents an assessment of the predictive capability of shock layer radiation model appropriate for NASA s Orion Crew Exploration Vehicle lunar return entry. A detailed set of spectrally resolved radiation intensity comparisons are made with recently conducted tests in the Electric Arc Shock Tube (EAST) facility at NASA Ames Research Center. The spectral range spanned from vacuum ultraviolet wavelength of 115 nm to infrared wavelength of 1400 nm. The analysis is done for 9.5-10.5 km/s shock passing through room temperature synthetic air at 0.2, 0.3 and 0.7 Torr. The comparisons between model and measurements show discrepancies in the level of background continuum radiation and intensities of atomic lines. Impurities in the EAST facility in the form of carbon bearing species are also modeled to estimate the level of contaminants and their impact on the comparisons. The discrepancies, although large is some cases, exhibit order and consistency. A set of tests and analyses improvements are proposed as forward work plan in order to confirm or reject various proposed reasons for the observed discrepancies.

Bose, Deepak↗

NASA NTRS2009

Sources of Sodium in the Lunar Exosphere: Modeling Using Ground-Based Observations of Sodium Emission and Spacecraft Data of the Plasma

Observations of the equatorial lunar sodium emission are examined to quantify the effect of precipitating ions on source rates for the Moon's exospheric volatile species. Using a model of exospheric sodium transport under lunar gravity forces, the measured emission intensity is normalized to a constant lunar phase angle to minimize the effect of different viewing geometries. Daily averages of the solar Lyman alpha flux and ion flux are used as the input variables for photon-stimulated desorption (PSD) and ion sputtering, respectively, while impact vaporization due to the micrometeoritic influx is assumed constant. Additionally, a proxy term proportional to both the Lyman alpha and to the ion flux is introduced to assess the importance of ion-enhanced diffusion and/or chemical sputtering. The combination of particle transport and constrained regression models demonstrates that, assuming sputtering yields that are typical of protons incident on lunar soils, the primary effect of ion impact on the surface of the Moon is not direct sputtering but rather an enhancement of the PSD efficiency. It is inferred that the ion-induced effects must double the PSD efficiency for flux typical of the solar wind at 1 AU. The enhancement in relative efficiency of PSD due to the bombardment of the lunar surface by the plasma sheet ions during passages through the Earth's magnetotail is shown to be approximately two times higher than when it is due to solar wind ions. This leads to the conclusion that the priming of the surface is more efficiently carried out by the energetic plasma sheet ions.

Sarantos, Menelaos↗

NASA NTRS2014

Simultaneous Laser-induced Fluorescence of Nitric Oxide and Atomic Oxygen in the Hypersonic Materials Environment Test System Arcjet Facility

Simultaneous nitric oxide (NO) and atomic oxygen (O) laser induced fluorescence (LIF) experiments were performed in the Hypersonic Materials Environmental Test System (HYMETS) facility at the NASA Langley Research Center. The data serves as an experimental database for validation for chemical and thermal nonequilibrium models used in hypersonic flows. Measurements were taken over a wide range of stagnation enthalpies (6.7 - 18.5 MJ/kg) using an Earth atmosphere simulant with a composition of 75% N2, 20% O2, and 5% Ar (by volume). These are the first simultaneous measurements of NO and O LIF to be reported in literature for the HYMETS facility. The maximum O LIF mean signal intensity was observed at a stagnation enthalpy of approximately 12 MJ/kg while the maximum NO LIF mean signal intensity was observed at a stagnation enthalpy of 6.7 MJ/kg. Experimental results were compared to simple fluorescence model that assumes equilibrium conditions in the plenum and frozen chemistry in the isentropic nozzle expansion (Mach 5). The equilibrium calculations were performed using CANTERA v2.1.1 with 16 species. The fluorescence model captured the correlation in mean O and NO LIF signal intensities over the entire range of stagnation enthalpies tested. Very weak correlations between single-shot O and NO LIF intensities were observed in the experiments at all of the stagnation enthalpy conditions.

Johansen, Craig↗

DOE OSTI2021

Experimental and computational investigations of ethane and ethylene kinetics with copper oxide particles for Chemical Looping Combustion

In this work, reaction pathways for the oxidation of methane, ethane, and ethylene with CuO was obtained by ReaxFF Molecular Dynamics (MD) simulations between temperatures of 1000 K and 2000 K. Experiments in a fixed-bed flow reactor were preformed with methane, ethane, and ethylene at temperatures ranging from 500 K to 1000 K with time-dependent species measurements from an Electron-Ionization Molecular Beam Mass Spectrometer (MBMS), and species validation with Gas Chromatography (GC) for detection of complete and intermediate combustion products. The MBMS and GC allow for the detection of oxygenated species and larger species produced from radical reformation. The simulation and experiment agree on the production of such species as CH 3 CHO, CH 2 O, CO, and H 2 O, which allow for the creation of simple C1 and C2 reaction pathways, which can be used in kinetic models of C2 species and larger fuels such as biofuels, which inherently depend on C1 and C2 kinetics and reaction pathway. The simulation and experiment disagree on the formation of C 2 H 2 , CH 3 OH, and CO 2 with large amounts of C 2 H 2 being measured in the ethylene oxidation simulations and CH 3 OH being formed in methane oxidation simulations, while neither species were experimentally found. In the case of CO 2 large amounts of CO 2 are rapidly produced in experiments with C2 fuels at 800 K, while little-to-no CO 2 was observed in simulations. This is believed to be resulting from the extremely short timescale of the simulations, preventing total oxidation of the fuel. Here, the differences in products produced between simulation and experiment allow for the potential to modify the ReaxFF potential functions to more accurately model the experimental products of Cu–H–O–C reaction kinetics.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2022

Integrability breaking in the Rule 54 cellular automaton

Cellular automata have recently attracted a lot of attention as testbeds to explore the emergence of many-body quantum chaos and hydrodynamics. We consider the Rule 54 model, one of the simplest interacting integrable models featuring two species of quasiparticles (solitons), in the presence of an integrability-breaking perturbation that allows solitons to backscatter. Here, we study the onset of thermalization and diffusive hydrodynamics in this model, compute perturbatively the diffusion constant of tracer particles, and comment on its relation to transport coefficients.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2022

Optimal stomatal theory predicts CO 2 responses of stomatal conductance in both gymnosperm and angiosperm trees

Optimal stomatal theory predicts that stomata operate to maximise photosynthesis (A net ) and minimise transpirational water loss to achieve optimal intrinsic water-use efficiency (iWUE). We tested whether this theory can predict stomatal responses to elevated atmospheric CO 2 (eCO 2 ), and whether it can capture differences in responsiveness among woody plant functional types (PFTs). We conducted a meta-analysis of tree studies of the effect of eCO 2 on iWUE and its components A net and stomatal conductance (g s ). We compared three PFTs, using the unified stomatal optimisation (USO) model to account for confounding effects of leaf–air vapour pressure difference (D). We expected smaller g s , but greater A net , responses to eCO 2 in gymnosperms compared with angiosperm PFTs. We found that iWUE increased in proportion to increasing eCO 2 in all PFTs, and that increases in A net had stronger effects than reductions in g s . The USO model correctly captured stomatal behaviour with eCO 2 across most datasets. The chief difference among PFTs was a lower stomatal slope parameter (g 1 ) for the gymnosperm, compared with angiosperm, species. Land surface models can use the USO model to describe stomatal behaviour under changing atmospheric CO 2 conditions.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

HPC4Mfg with Carbon Inc.

Continuous Liquid Interface Production (CLIP) is poised to bring additive manufacturing to multiple American manufacturing sectors owing to its unique combination of rapid print speeds and material options that resemble injection molding thermoplastics. In spite of these benefits, CLIP is still a maturing process. To improve our understanding and control of the process, this project developed a multi-physics computational model that encompasses the coupled chemical-physical processes of photopolymerization and fluid flow to predict part outcomes. A physically predictive model can enable rapid optimization of CLIP and reduce the current cycle time and waste associated with optimization by four-fold. Ultimately, this effort will help open the U.S. $400B plastic manufacturing industry to the key benefits of additive manufacturing, namely mass customization, unlimited design space, and a cost- and energy-effective path to mainstream manufacturing. In the course of the project we produced a model which coupled fluid-flow, species transport, and photochemistry to model the Carbon CLIP process. As the development proceeded, we validated the code against theory and experiments. The resulting code was transferred to Carbon, and we expect it to be a useful part of their modeling capability. Future work includes improvements to the fluid solver’s robustness and performance, along with the addition of additional physics models.

42 ENGINEERING↗

DOE OSTI2020

Platform for efficient large-scale storage and analysis of multi-omics data in plant and microbial systems (Final Technical Report)

Genomic variation at the sequence level fundamentally affects the phenotypic state of all organisms at all stages of development, while dynamic processes such as changes in the epigenome (e.g. DNA methylation state) and transcriptome regulate the specific phenotype expressed at any given state of development based upon that genomic variation. In plants, DNA methylation is a particularly important mechanism for both regulating transcriptomic expression and for management of genomic variations that could be deleterious to the organism due to the presence of active retrotransposons in plant genomes. While DNA methylation is heritable, it is also dynamic through a given plant’s development and life cycle, particularly during the development from seed to mature specimen suggesting variations in DNA methylation could be critical regulators of biologically and commercially important phenotypes such as time to flowering; in addition, plant DNA methylation is more complex than that of animals, with methylation of CHG and CHH trinucleotides evident in addition to the better-known CG methylation. The complexity of plant DNA methylation and its interplay with genomic sequence variation, transcriptomics and other epigenomic factors demand a storage and analysis framework that can cope with the complexity both within a single specimen and with analyses that span many individuals and even many species, such as attempts to extend models from model organisms to commercially relevant species. In addition to complexity, the rapid development and proliferation of sequencing technology has led to an explosion of data volume that conventional storage and analysis solutions will likely be unable to cope with in the long run. We proposed to study these with suitable distributed storage and computation and therefore for the application of cloud computing to biological analyses; integrate with existing data sources and compatible with virtually any interface use case, from fully automated shell scripts to notebooks and do all these at scale in this STTR grant.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2021

Development of a Multi-physics Model to Optimize Continuous Liquid Interface Production (CLIP) for Additive Manufacturing (Carbon3D HPC4Mfg Final Report)

Continuous Liquid Interface Production (CLIP) is poised to bring additive manufacturing to multiple American manufacturing sectors owing to its unique combination of rapid print speeds and material options that resemble injection molding thermoplastics. In spite of these benefits, CLIP is still a maturing process. To improve our understanding and control of the process, this project developed a multi-physics computational model that encompasses the coupled chemical-physical processes of photopolymerization and fluid flow to predict part outcomes. A physically predictive model can enable rapid optimization of CLIP and reduce the current cycle time and waste associated with optimization by four-fold. Ultimately, this effort will help open the U.S. $400B plastic manufacturing industry to the key benefits of additive manufacturing, namely mass customization, unlimited design space, and a cost- and energy-effective path to mainstream manufacturing. In the course of the project we produced a model which coupled fluid-flow, species transport, and photochemistry to model the Carbon CLIP process. As the development proceeded, we validated the code against theory and experiments. The resulting code was transferred to Carbon, and we expect it to be a useful part of their modeling capability. Future work includes improvements to the fluid solver’s robustness and performance, along with the addition of additional physics models.

36 MATERIALS SCIENCE↗

NASA NTRS1991

Numerical simulation of shock-induced combustion/detonation in a premixed H2-air mixture using Navier-Stokes equations

A numerical study was conducted to address the structural stability of the oblique detonation wave. An attempt was made to isolate the structural instability predicted by Buckmaster's (1990) linear stability analysis. For this study a detailed viscous flowfield with finite-rate chemistry was computed past a 20-deg wedge. The finite-rate chemistry was modeled by using a seven-species and seven-reaction model. Instability modes were isolated by analyzing the Fourier power spectrum of the H2O mass fraction at selected sample stations. No unstable temporal modes with dominant frequency were isolated. It was concluded that the instability which is predicted by the Buckmaster work was a high-frequency low-amplitude phenomenon. For engineering purposes, the oblique detonation wave is a stable phenomenon as long as sufficient levels of overdrive are present.

Singh, D. J.↗

NASA NTRS1992

A numerical study of the effects of geometry on the performance of a supersonic combustor

A numerical study is conducted to investigate the effects of two combustor scale parameters, the expansion angle and the length of the constant area combustor section, on the mixing and combustion within a supersonic combustor. This study uses the SPARK 3D Navier-Stokes code. Turbulence is modeled utilizing an algebraic eddy viscosity model and the chemical mechanism is modeled with a 7-reaction, 7-species finite-rate chemistry model. The calculations show that, even at the relatively low flight Mach numbers (5-7) associated with the conditions examined, the chemical constituents are far from equilibrium, and therefore that kinetics effects are important.

Eklund, Dean R.↗

NASA NTRS1994

Quasiglobal reaction model for ethylene combustion

The objective of this study is to develop a reduced mechanism for ethylene oxidation. The authors are interested in a model with a minimum number of species and reactions that still models the chemistry with reasonable accuracy for the expected combustor conditions. The model will be validated by comparing the results to those calculated with a detailed kinetic model that has been validated against the experimental data.

Singh, D. J.↗