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At least 379 records · Page 21

Neutrinoless double beta decay versus other probes of heavy sterile neutrinos

We make a comparative study of the neutrinoless double beta decay constraints on heavy sterile neutrinos versus other direct and indirect constraints from both lepton number conserving and violating processes, as a sensitive probe of the extent of lepton number violation and possible interference effects in the sterile sector. We introduce a phenomenological parametrisation of the simplified one-generation seesaw model with one active and two sterile neutrino states in terms of experimentally measurable quantities, such as active-sterile neutrino mixing angles, CP phases, masses and mass splittings. This simple parametrisation enables us to analytically derive a spectrum of possible scenarios between the canonical seesaw with purely Majorana heavy neutrinos and inverse seesaw with pseudo-Dirac ones. We then go on to constrain the simplified parameters of this model from various experiments at the energy, intensity and cosmic frontiers. We emphasise that the constraints from lepton number violating processes strongly depend on the mass splitting between the two sterile states and the relative CP phase between them. This is particularly relevant for neutrinoless double beta decay, which is weakened for small mass splitting and opposite CP parities between the sterile states. On the other hand, neutrinoless double beta decay is especially sensitive for Majorana sterile neutrinos with masses around 0.1-10 GeV.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Collision-energy dependence of deuteron cumulants and proton-deuteron correlations in Au+Au collisions at RHIC

We report the first measurements of cumulants, up to 4th order, of deuteron number distributions and proton-deuteron correlations in Au+Au collisions recorded by the STAR experiment in phase-I of Beam Energy Scan (BES) program at the Relativistic Heavy Ion Collider. Deuteron cumulants, their ratios, and proton-deuteron mixed cumulants are presented for different collision centralities covering a range of center-of-mass energy per nucleon pair $\sqrt{s_{NN}} = 7.7$ to 200 GeV. It is found that the cumulant ratios at lower collision energies favor a canonical ensemble over a grand canonical ensemble in thermal models. An anti-correlation between proton and deuteron multiplicity is observed across all collision energies and centralities, consistent with the expectation from global baryon number conservation. The UrQMD model coupled with a phase-space coalescence mechanism qualitatively reproduces the collision-energy dependence of cumulant ratios and proton-deuteron correlations.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Bioorthogonal Click Chemistry for Antibody-Free Profiling of Acetylation, Propionylation, and Butyrylation in Pseudomonas aeruginosa and Methicillin-Resistant Staphylococcus aureus

Lysine acylation is a posttranslational modification (PTM) conserved in all domains of life and is essential for regulating diverse biological processes. Traditional methods for investigating acylation rely on anti-acyl-lysine antibodies, which are costly and time-consuming and often exhibit variable affinity. To remedy these pitfalls, we developed an antibody-free method for bacterial acylome enrichment using bioorthogonal click chemistry coupled with tandem mass spectrometry. We applied this approach to the pathogens Pseudomonas aeruginosa and methicillin-resistant Staphylococcus aureus (MRSA) to explore the biological significance of acylation in each organism. We characterized the acetylome, propionylome, and butyrylome in P. aeruginosa UCBPP-PA14 and the acetylome and propionylome in MRSA. Comparative analyses revealed unique PTM dynamics showing that acylation regulated a wide range of cellular functions, including metabolism, antibiotic resistance, virulence, and stress response. This work establishes the first antibody-free enrichment method for defining bacterial acylomes and provides new insight into global lysine acylation networks in pathogenic bacteria.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota

Few aerobic hyperthermophilic microorganisms degrade polysaccharides. Here, we describe the genome-enabled enrichment and optical tweezer-based isolation of an aerobic polysaccharide-degrading hyperthermophile, Fervidibacter sacchari, previously ascribed to candidate phylum Fervidibacteria. F. sacchari uses polysaccharides and monosaccharides for growth at 65–87.5°C and expresses 191 carbohydrate-active enzymes (CAZymes) according to RNA-Seq and proteomics, including 31 with unusual glycoside hydrolase domains (GH109, GH177, GH179). Fluorescence in-situ hybridization and nanoscale secondary ion mass spectrometry confirmed rapid assimilation of 13 C-starch in spring sediments. Purified GHs were optimally active at 80–100°C on ten different polysaccharides. Finally, we propose reassigning Fervidibacteria as a class within phylum Armatimonadota, along with 18 other species, and show that a high number and diversity of CAZymes is a hallmark of the phylum, in both aerobic and anaerobic lineages. Our study establishes Fervidibacteria as hyperthermophilic polysaccharide degraders in terrestrial geothermal springs and suggests a broad role for Armatimonadota in polysaccharide catabolism.

59 BASIC BIOLOGICAL SCIENCES↗

Locating Methyl-Etherified and Methyl-Esterified Uronic Acids in the Plant Cell Wall Pectic Polysaccharide Rhamnogalacturonan II

Rhamnogalacturonan II (RG-II) is a structurally complex pectic polysaccharide that exists as a borate ester cross-linked dimer in the cell walls of all vascular plants. The glycosyl sequence of RG-II is largely conserved, but there is evidence that galacturonic acid (GalA) methyl etherification and glucuronic acid (GlcA) methyl esterification vary in the A sidechain across plant species. Methyl esterification of the galacturonan backbone has also been reported but not confirmed. Here we describe a new procedure, utilizing aq. sodium borodeuteride (NaBD4)-reduced RG-II, to identify the methyl esterification status of backbone GalAs. Our data suggest that up to two different GalAs are esterified in the RG-II backbone. We also adapted a procedure based on methanolysis and NaBD4 reduction to identify 3-, 4-, and 3,4-O-methyl GalA in RG-II. These data, together with matrix-assisted laser desorption/ionization–time-of-flight mass spectrometry (MALDI-TOF) MS analysis of sidechain A generated from selected RG-IIs and their NaBD4-reduced counterparts, suggest that methyl etherification of the ß-linked GalA and methyl esterification of the GlcA are widespread. Nevertheless, the extent of these modifications varies between plant species. Our analysis of the sidechain B glycoforms in RG-II from different dicots and nonpoalean monocots suggests that this sidechain has a minimum structure of an O-acetylated hexasaccharide (Ara-[MeFuc]-Gal-AceA-Rha-Api-). To complement these studies, we provide further evidence showing that dimer formation and stability in vitro is cation and borate dependent. Taken together, our data further refine the primary sequence and sequence variation of RG-II and provide additional insight into dimer stability and factors controlling dimer self-assembly.

BASIC BIOLOGICAL SCIENCES↗

Soil microbial ecology and microbiome-metabolite linkages improve understanding of ecosystem states along terrestrial-aquatic interfaces

Coastal soils are dynamic systems where unique microbial niches are shaped by the intensity and duration of flooding between the terrestrial and aquatic boundaries of the terrestrial-aquatic interface (TAI). We aimed to understand the soil microbial community (16S rRNA gene) along the TAIs of a freshwater versus estuarine region and how it relates to organic matter (OM, via Fourier Transform Ion Cyclotron Resonance Mass Spectrometry). We studied the TAI gradients along a transect from upland (forested), transition (stressed forest), to wetland at three sites in each of the Lake Erie (freshwater) and Chesapeake Bay (estuarine) regions. Microbial communities differed significantly by region, transect position, and site. Contrary to expectations, given their dynamic hydrologies, transitions represented midpoints in microbial richness and diversity. We identified a core microbiome conserved across all transect positions within a region, highlighting potential microbial functions most resilient to environmental change. Indicator taxa unique to each transect position defined specific niches shaped by soil biogeochemistry. Co-expression networks of feature-level β-nearest-taxon indices revealed positive relationships in bacterial and OM feature contributions to community assembly. Our study provides critical insights into microbial communities at the forefront of hydrological changes in coastal areas that connect the land to lakes and oceans and remain vulnerable to changing weather patterns.

coastal ecosystems↗

Evolutionary diversity of proton and water channels on the oxidizing side of photosystem II and their relevance to function

One of the reasons for the high efficiency and selectivity of biological catalysts arise from their ability to control the pathways of substrates and products using protein channels, and by modulating the transport in the channels using the interaction with the protein residues and the water/hydrogen-bonding network. Here, this process is clearly demonstrated in Photosystem II (PS II), where its light-driven water oxidation reaction catalyzed by the Mn 4 CaO 5 cluster occurs deep inside the protein complex and thus requires the transport of two water molecules to and four protons from the metal center to the bulk water. Based on the recent advances in structural studies of PS II from X-ray crystallography and cryo-electron microscopy, in this review we compare the channels that have been proposed to facilitate this mass transport in cyanobacteria, red and green algae, diatoms, and higher plants. The three major channels (O1, O4, and Cl1 channels) are present in all species investigated; however, some differences exist in the reported structures that arise from the different composition and arrangement of membrane extrinsic subunits between the species. Among the three channels, the Cl1 channel, including the proton gate, is the most conserved among all photosynthetic species. We also found at least one branch for the O1 channel in all organisms, extending all the way from Ca/O1 via the ‘water wheel’ to the lumen. However, the extending path after the water wheel varies between most species. The O4 channel is, like the Cl1 channel, highly conserved among all species while having different orientations at the end of the path near the bulk. The comparison suggests that the previously proposed functionality of the channels in T. vestitus (Ibrahim et al., Proc Natl Acad Sci USA 117:12624–12635, 2020; Hussein et al., Nat Commun 12:6531, 2021) is conserved through the species, i.e. the O1-like channel is used for substrate water intake, and the tighter Cl1 and O4 channels for proton release. The comparison does not eliminate the potential role of O4 channel as a water intake channel. However, the highly ordered hydrogen-bonded water wire connected to the Mn 4 CaO 5 cluster via the O4 may strongly suggest that it functions in proton release, especially during the S 0 → S 1 transition (Saito et al., Nat Commun 6:8488, 2015; Kern et al., Nature 563:421–425, 2018; Ibrahim et al., Proc Natl Acad Sci USA 117:12624–12635, 2020; Sakashita et al., Phys Chem Chem Phys 22:15831–15841, 2020; Hussein et al., Nat Commun 12:6531, 2021).

59 BASIC BIOLOGICAL SCIENCES↗

Nucleon axial and pseudoscalar form factors using twisted-mass fermion ensembles at the physical point

We compute the nucleon axial and pseudoscalar form factors using three N f = 2 + 1 + 1 twisted-mass fermion ensembles with all quark masses tuned to approximately their physical values. The values of the lattice spacings of these three physical point ensembles are 0.080, 0.068, and 0.057 fm and spatial sizes 5.1, 5.44, and 5.47 fm, respectively, yielding m π L > 3.6 . Convergence to the ground-state matrix elements is assessed using multistate fits. We study the momentum dependence of the three form factors and check the partially conserved axial-vector current (PCAC) hypothesis and the pion pole dominance (PPD). We show that in the continuum limit, the PCAC and PPD relations are satisfied. We also show that the Goldberger-Treimann relation is approximately fulfilled and determine the Goldberger-Treiman discrepancy. Our final results are g A = 1.245 ( 28 ) ( 14 ) for the nucleon axial charge, ⟨ r A 2 ⟩ = 0.339 ( 48 ) ( 06 ) fm 2 for the axial radius, g π N N ≡ lim Q 2 → − m π 2 G π N N ( Q 2 ) = 13.25 ( 67 ) ( 69 ) for the pion-nucleon coupling constant, and G P ( 0.88 m μ 2 ) ≡ g P * = 8.99 ( 39 ) ( 49 ) for the induced pseudoscalar form factor at the muon capture point. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

Leptonic probes of alternative left-right symmetric models

We explore constraints on the parameter space of the alternative left-right model originating from the leptonic sector. Our analyses focuses on both lepton-flavor-conserving observables, particularly the anomalous magnetic moment of the muon, and lepton-flavor-violating processes like μ → e γ decay and μ − e conversions in nuclei. While contributions to the anomalous magnetic moment fall below the measured values at 2 σ , current and future experimental sensitivities to flavor-violating branching rations of the Standard Model leptons are expected to impose lower bounds on the mass of the peculiar S U ( 2 ) R gauge boson of the model. This provides complementary constraints relative to existing limits, which are indirect and derived from collider bounds on the mass of the associated neutral gauge boson Z ′ . Published by the American Physical Society 2025

Frank, Mariana (ORCID:0000000322684821)↗

Asymmetric loading of TnsE regulates Tn7 targeting of DNA replication structures

Abstract Tn7 transposable elements are known for their sophisticated target-site selection mechanisms. For the prototypical Tn7 element, dedicated transposon-encoded proteins direct insertions to either a conserved site in the chromosome or replicating DNA structures in conjugal plasmids, ensuring the vertical and horizontal spread of the element. While the pathway targeting the attTn7 site in the bacterial chromosome has been extensively studied, the pathway targeting DNA replication structures remains poorly understood. We have used an integrative structural biology approach to elucidate how the Tn7-encoded protein TnsE recognizes replication sites. Using native mass spectrometry, we found that TnsE forms 1:1 and 2:1 (TnsE:DNA) complexes on 3′-recessed DNA, with gain-of-function TnsE variants favoring the formation of 2:1 complexes. Structural characterization confirms that two TnsE molecules bind to DNA with the C-terminal domain of the protein recognizing duplex DNA, leaving the N-terminal domain to impose DNA substrate specificity and recruit the core transposition machinery. Collectively, our work is consistent with a model where TnsE-mediated target-site selection relies on the formation of an asymmetric TnsE:DNA complex to recruit the Tn7 transposase to DNA replication structures.

Biochemistry & Molecular Biology↗

Numerical Improvements in Magnetohydrodynamic, Pulsed Power Simulations of Near-Target Plasmas

Magnetohydrodynamic (MHD) simulations of pulsed power experiments frequently result in unphysical runaway heating when extended to low values of mass density. Traditionally, this has been addressed by the use of conductivity floors below which the plasma is given an arbitrarily low conductivity value. Here, a low-density treatment is presented that allows for low-density material to carry current while maintaining a stable temperature. This treatment is implemented in the Ares multiphysics code. Numerical modifications to the conventional vacuum treatment include an energy-conserving density floor, a modified averaging procedure to determine the thermal conductivity at the edge of adjacent zones, and a modified averaging procedure for determining the thermal conductivity in mixed zones that contain material from differing regions. Additionally, anomalous resistivity and Bohm diffusion models are implemented as simplified models for microphysics-induced enhancement of collisional transport. Importantly, the advantage of these various improvements are illustrated in a simple 1-D pulsed power target where the combined changes result in stable temperatures within the lower density regions.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Spin density matrix elements in exclusive $\rho ^0$ meson muoproduction

We report on a measurement of Spin Density Matrix Elements (SDMEs) in hard exclusive $\rho ^0$ meson muoproduction at COMPASS using 160 GeV/c polarised μ + and μ – beams impinging on a liquid hydrogen target. The measurement covers the kinematic range 5.0 GeV/c 2 < W < 17.0 GeV/c 2 , 1.0 (GeV/c) 2 < $\mathrm{Q}$ 2 < 10.0 (GeV/c) 2 and 0.01 (GeV/c) 2 < $p_{\textrm{T}}^2$ < 0.5 (GeV/c) 2 . Here, W denotes the mass of the final hadronic system, $\mathrm{Q}$ 2 the virtuality of the exchanged photon, and $p_{\textrm{T}}$ the transverse momentum of the $\rho ^0$ meson with respect to the virtual-photon direction. The measured non-zero SDMEs for the transitions of transversely polarised virtual photons to longitudinally polarised vector mesons ($\gamma ^*_T \rightarrow V^{ }_L$) indicate a violation of s-channel helicity conservation. Additionally, we observe a dominant contribution of natural-parity-exchange transitions and a very small contribution of unnatural-parity-exchange transitions, which is compatible with zero within experimental uncertainties. The results provide important input for modelling Generalised Parton Distributions (GPDs). In particular, they may allow one to evaluate in a model-dependent way the role of parton helicity-flip GPDs in exclusive $\rho ^0$ production.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Hazma meets HERWIG4DM: precision gamma-ray, neutrino, and positron spectra for light dark matter

Herein we present a new open-source package, Hazma 2, that computes accurate spectra relevant for indirect dark matter searches for photon, neutrino, and positron production from vector-mediated dark matter annihilation and for spin-one dark matter decay. The tool bridges across the regimes of validity of two state of the art codes: Hazma 1, which provides an accurate description below hadronic resonances up to center-of-mass energies around 250 MeV, and Herwig4DM, which is based on vector meson dominance and measured form factors, and accurate well into the few GeV range. The applicability of the combined code extends to approximately 1.5 GeV, above which the number of final state hadrons off of which we individually compute the photon, neutrino, and positron yield grows exceedingly rapidly. We provide example branching ratios, particle spectra and conservative observational constraints from existing gamma-ray data for the well-motivated cases of decaying dark photon dark matter and vector-mediated fermionic dark matter annihilation. Finally, we compare our results to other existing codes at the boundaries of their respective ranges of applicability. Hazma 2 is freely available on GitHub athttps://github.com/LoganAMorrison/Hazma.

79 ASTRONOMY AND ASTROPHYSICS↗

Lipocalin Blc is a potential heme-binding protein

Lipocalins are a superfamily of functionally diverse proteins defined by a well-conserved tertiary structure despite variation in sequence. Lipocalins bind and transport small hydrophobic molecules in organisms of all kingdoms. However, there is still uncertainty regarding the function of some members of the family, including bacterial lipocalin Blc from Escherichia coli. Here, we present evidence that lipocalin Blc may be involved in heme binding, trans-periplasmic transport, or heme storage. This conclusion is supported by a cocrystal structure, mass-spectrometric data, absorption titration, and in silico analysis. Binding of heme is observed at low micromolar range with one-to-one ligand-to-protein stoichiometry. However, the absence of classical coordination to the iron atom leaves the possibility that the primary ligand of Blc is another tetrapyrrole.

59 BASIC BIOLOGICAL SCIENCES↗

In tube condensation of low global warming potential refrigerants in an axial micro-fin aluminum tube

Environmental regulations have driven the development of refrigerants with low global warming potential (GWP). To design heat exchangers using these new refrigerants, data are needed concerning the heat transfer coefficient and pressure drop in two-phase flow. Another change is the increasing use of aluminum tubes rather than copper tubes to reduce heat exchanger cost. Hence, this study presents an experimental investigation of flow condensation using an expanded axial micro-fin aluminum tube with a fin-tip diameter of 5.96 mm. Here, the experiments included single compounds R-32, R-1234yf, and R-1234ze(E), zeotropic mixtures with low glide (R-454B), and zeotropic mixtures with high-glide (R-454C and R-455A). Experiments were conducted at condensation temperatures ranging from 40 °C to 50 °C, reduced pressures ranging from 0.21 to 0.55, and mass fluxes ranging from 150 to 350 kg/(m 2 s). Data obtained for these refrigerants constitute one of the first reports for high-glide refrigerants using axial micro-fin aluminum tubes. An evaluation of heat transfer degradation of zeotropic mixtures due to mass transfer resistance at the liquid/vapor interface is presented. This information can be used to design heat exchangers for next generation air conditioning and refrigeration systems.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Exploration of mass splitting and muon/tau mixing parameters for an eV-scale sterile neutrino with IceCube

We present the first three-parameter fit to a 3+1 sterile neutrino model using 7.634 years of data from the IceCube Neutrino Observatory on $ν$ μ + $\overline{ν}$ μ charged-current interactions in the energy range 500–9976 GeV. Our analysis is sensitive to the mass-squared splitting between the heaviest and lightest mass state (Δm$^{2}_{41}$), the mixing matrix element connecting muon flavor to the fourth mass state (|U μ4 | 2 ), and the element connecting tau flavor to the fourth mass state (|U $\tau$4 | 2 ). Predicted propagation effects in matter enhance the signature through a resonance as atmospheric neutrinos from the Northern Hemisphere traverse the Earth to the IceCube detector at the South Pole. The remaining sterile neutrino matrix elements are left fixed, with |U e4 | 2 = 0 and δ 14 = 0, as they have a negligible effect, and δ 24 = π is set to give the most conservative limits. The result is consistent with the no-sterile neutrino hypothesis with a probability of 4.3%. Profiling the likelihood of each parameter yields the 90% confidence levels: 2.4eV 2 < Δm$^{2}_{41}$) < 9.6eV 2 , 0.0081< |U μ4 | 2 < 0.10, and |U $\tau$4 | 2 < 0.035, which narrows the allowed parameter-space for |U $\tau$4 | 2 . However, the primary result of this analysis is the first map of the 3+1 parameter space exploring the interdependence of Δm$^{2}_{41}$, |U μ4 | 2 , and |U $\tau$4 | 2 .

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Lectures on statistical mechanics

Presented here is a transcription of the lecture notes from Professor Allan N. Kaufman’s graduate statistical mechanics course Physics 212A and 212B at the University of California Berkeley from the 1972–1973 academic year. 212A addressed equilibrium statistical mechanics with topics: fundamentals (micro-canonical and sub-canonical ensembles, adiabatic law and action conservation, fluctuations, pressure, and virial theorem), classical fluids and other systems (equation of state, deviations from ideality, virial coefficients and van der Waals potential, canonical ensemble and partition function, quasistatic evolution, grand-canonical ensemble and partition function, chemical potential, simple model of a phase transition, quantum virial expansion, numerical simulation of equations of state, and phase transition), chemical equilibrium (systems with multiple species and chemical reactions, law of mass action, Saha equation, chemical equilibrium including ionization and excited states), and long-range interactions (including Coulomb, dipole, and gravitational interactions, Debye–Hückel theory, and shielding). 212B addressed nonequilibrium statistical mechanics with topics: fundamentals (definitions: realizations, moments, characteristic function, and discrete variables), Brownian motion (Langevin equation, fluctuation–dissipation theorem, spatial diffusion, Boltzmann’s H-theorem), Liouville and Klimontovich equations, Landau equation (derivation, elaboration, and H-theorem, and irreversibility), Markov processes and Fokker–Planck equation (derivations of the Fokker–Planck equation and a master equation), linear response and transport theory (linear Boltzmann equation, linear response theory of Kubo and Mori, relation of entropy production to electrical conductivity, transport relations and coefficients, normal mode solutions of the transport equations, sketch of a generalized Langevin equation method for transport theory), and an introduction to nonequilibrium quantum statistical mechanics.

plasma dynamics↗

Ab initio benchmarks of neutrinoless double- β decay in light nuclei with a chiral Hamiltonian

Here, we report ab initio benchmark calculations of nuclear matrix elements (NMEs) for neutrinoless double-β (0νββ) decays in light nuclei with mass numbers ranging from A = 6 to A = 22. We use the transition operator derived from light-Majorana neutrino exchange and evaluate the NME with three different methods: two variants of in-medium similarity renormalization group (IMSRG) and importance-truncated no-core shell model (IT-NCSM). The same two plus three nucleon interaction from chiral effective field theory is employed, and both isospin-conserving (ΔT = 0) and isospin-changing (ΔT = 2) transitions are studied. We compare our resulting ground-state energies and NMEs to those of recent ab initio no-core shell model and coupled-cluster calculations, also with the same inputs. We show that the NMEs of ΔT = 0 transitions are in good agreement among all calculations, at the level of 10%. For ΔT = 2, relative deviations are more significant in some nuclei. The comparison with the exact IT-NCSM result allows us to analyze these cases in detail, and indicates the next steps toward improving the IMSRG-based approaches. The present study clearly demonstrates the power of consistent cross checks that are made possible by ab initio methodology. This capability is crucial for providing meaningful many-body uncertainties in the NMEs for the 0νββ decays in heavier candidate nuclei, where quasiexact benchmarks are not available.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗