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At least 379 records · Page 21
All sourcesNASA NTRSDOE OSTI
NASA NTRS2000

A Comparison of the Extra Nuclear X-ray and Radio Features in M87

ROSAT High Resolution Imager (HRI) data from eight observations have been co-added to obtain an effective exposure of 230 ksec. We have identified a number of features and regions with excess X-ray brightness over that from a circularly symmetric model of the well known hot gas component. A prominent 'spur' extends 4feet from the vicinity of knot A towards the south-west. The brightness to the south and east of this spur is significantly higher than that to the north and west. Excess brightness is also found to the East of the nucleus, with a local maximum centered on the eastern radio lobe 3 feet from the core. There are two well known relationships between radio and X-ray emission for radio galaxies in clusters: coincidence of emissions because the X-rays come from inverse Compton or synchrotron processes; and anti-coincidence caused by exclusion of hot gas from radio entities. We present a radio/X-ray comparison to determine if either of these relationships can be isolated in M87. The greatest obstacle we face is the unknown projection which affects both bands.

Harris, D. E.↗
DOE OSTI2024

Molecular and Epidemiological Investigation of Fluconazole-resistant Candida parapsilosis —Georgia, United States, 2021

Abstract Background Reports of fluconazole-resistant Candida parapsilosis bloodstream infections are increasing. We describe a cluster of fluconazole-resistant C parapsilosis bloodstream infections identified in 2021 on routine surveillance by the Georgia Emerging Infections Program in conjunction with the Centers for Disease Control and Prevention. Methods Whole-genome sequencing was used to analyze C parapsilosis bloodstream infections isolates. Epidemiological data were obtained from medical records. A social network analysis was conducted using Georgia Hospital Discharge Data. Results Twenty fluconazole-resistant isolates were identified in 2021, representing the largest proportion (34%) of fluconazole-resistant C parapsilosis bloodstream infections identified in Georgia since surveillance began in 2008. All resistant isolates were closely genetically related and contained the Y132F mutation in the ERG11 gene. Patients with fluconazole-resistant isolates were more likely to have resided at long-term acute care hospitals compared with patients with susceptible isolates (P = .01). There was a trend toward increased mechanical ventilation and prior azole use in patients with fluconazole-resistant isolates. Social network analysis revealed that patients with fluconazole-resistant isolates interfaced with a distinct set of healthcare facilities centered around 2 long-term acute care hospitals compared with patients with susceptible isolates. Conclusions Whole-genome sequencing results showing that fluconazole-resistant C parapsilosis isolates from Georgia surveillance demonstrated low genetic diversity compared with susceptible isolates and their association with a facility network centered around 2 long-term acute care hospitals suggests clonal spread of fluconazole-resistant C parapsilosis. Further studies are needed to better understand the sudden emergence and transmission of fluconazole-resistant C parapsilosis.

Misas, Elizabeth (ORCID:0000000162437716)↗
NASA NTRS1988

Birth of millisecond pulsars in globular clusters

It is argued here that accretion-induced collapse of white dwarfs in binaries can form millisecond pulsars directly without requiring a precursor low-mass X-ray binary stage. Ablation of the precollapse binary companion by the millisecond pulsar's radiation field, a process invoked to explain some of the characteristics of the recently discovered eclipsing millisecond pulsar, can then yield isolated neutron stars witout requiring an additional stellar encounter.

Grindlay, J. E.↗
NASA NTRS2022

The Dense, Warm Interstellar Medium (D-WIM): Unravelling a New Phase of the ISM A PRIMA FIR Probe Mission Project

We propose a study of the Dense Warm Interstellar Medium (D-WIM) via the two fine structure lines of ionized nitrogen (\NII). This new phase of the interstellar medium (ISM) has density 10 $\cmv \le n(e) \le$ 100 $\cmv$, and has effectively been identified throughout much of the Milky Way and in nearby galaxies. :The unexpected conditiosn in the D-WIM immediately raise important questions both about this phase of the ISM and its relationship to the ISM as a while. These include: what is the structure of the D-WIM -- e.g. filling factor, distribution, and morphology?; what is the origin of the D-WIM?; what supports its ionization and what is its evolution given huge overpressure relative to the $\ge$ 100 times more diffuse Warm Ionized Medium (WIM)?; what is its possible relationship to stars - is it the the remnants of very old HII regions that were produced by clusters of masive stars? The PRIMA survey requires a coverage of a large fraction of the plane, plus selected regions at high galactic latitudes. A sensitivity of 10$^{-9}$ $Wm^{-2}sr^{-1}$ would be highly desirable. A spectral resolution $R$ of 10$^4$ will isolate individual spectral features. $R$ = 10$^3$ would be acceptable to measure the total intensity. This PRIMA survey could be part of a broader survey of the ISM, and include a number of other important ISM tracers such as [CII] 158 \um, [OI] 63 \um\ and [OI] 146 \um, depending on wavelength coverage of the instrument. The sensitivity requirement for study of the D-WIM is likely more stringent than for the other lines, and may require special consideration for successful implementation as well as for determining the area that can be observed.

Lis, Dariusz↗
DOE OSTI2026

Classifying biophysical subpopulations of insulin secretory granules using quantitative whole-cell structure analysis

Pancreatic beta cells contain insulin secretory granules (ISGs), organelles where proinsulin is converted into insulin. As ISGs mature, they undergo extensive biophysical remodeling, producing a spectrum of subpopulations with heterogeneous molecular and spatial characteristics. However, systematic methods to define ISG subpopulations remain underdeveloped. To address this gap in knowledge, we employed soft X-ray tomography (SXT), which can quantitatively measure the biochemical density of ISGs within whole beta cells. Using unsupervised clustering, we classified subpopulations based on molecular density, size, and spatial positioning. Across different insulin secretory stimuli, we observed shifts toward mature and releasable subtypes, demonstrating that exogenous signals can dynamically remodel ISG subpopulation distributions. We extended this methodology to primary beta cells characterized using volume electron microscopy (vEM). Integrating subpopulations from SXT and vEM uncovered insights inaccessible by a single method in isolation. This strategy establishes a framework for defining therapeutic approaches aimed at enriching physiologically beneficial ISG subpopulations.

dense-core granules↗
DOE OSTI2020

Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline

Little is known about viruses in oxygen-deficient water columns (ODWCs). In surface ocean waters, viruses are known to act as gene vectors among susceptible hosts. Some of these genes may have metabolic functions and are thus termed auxiliary metabolic genes (AMGs). AMGs introduced to new hosts by viruses can enhance viral replication and/or potentially affect biogeochemical cycles by modulating key microbial pathways. Here we identify 748 viral populations that cluster into 94 genera along a vertical geochemical gradient in the Cariaco Basin, a permanently stratified and euxinic ocean basin. The viral communities in this ODWC appear to be relatively novel as 80 of these viral genera contained no reference viral sequences, likely due to the isolation and unique features of this system. We identify viral elements that encode AMGs implicated in distinctive processes, such as sulfur cycling, acetate fermentation, signal transduction, [Fe–S] formation, and N-glycosylation. These AMG-encoding viruses include two putative Mu-like viruses, and viral-like regions that may constitute degraded prophages that have been modified by transposable elements. Our results provide an insight into the ecological and biogeochemical impact of viruses oxygen-depleted and euxinic habitats.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Methanol carbonylation to acetaldehyde on Au particles supported by single-layer MoS 2 grown on silica

Homogenous single-layer MoS 2 films coated with sub-single layer amounts of gold are found to isolate the reaction of methanol with carbon monoxide, the fundamental step toward higher alcohols, from an array of possible surface reactions. Active surfaces were prepared from homogenous single-layer MoS 2 films coated with sub-single layer amounts of gold. These gold atoms formed clusters on the MoS2 surface. A gas mixture of carbon monoxide (CO) and methanol (CH 3 OH) was partially converted to acetaldehyde (CH 3 CHO) under mild process conditions (308 kPa and 393 K). This carbonylation of methanol to a C 2 species is a critical step toward the formation of higher alcohols. Density functional theory modeling of critical steps of the catalytic process identify a viable reaction pathway. Imaging and spectroscopic methods revealed that the single layer of MoS 2 facilitated formation of nanoscale gold islands, which appear to sinter through Ostwald ripening. Here, the formation of acetaldehyde by the catalytic carbonylation of methanol over supported gold clusters is an important step toward realizing controlled production of useful molecules from low carbon-count precursors.

2D catalyst↗
DOE OSTI2024

scMicrobe PTA: near complete genomes from single bacterial cells

Microbial genomes produced by standard single-cell amplification methods are largely incomplete. Here, we show that primary template-directed amplification (PTA), a novel single-cell amplification technique, generated nearly complete genomes from three bacterial isolate species. Furthermore, taxonomically diverse genomes recovered from aquatic and soil microbiomes using PTA had a median completeness of 81%, whereas genomes from standard multiple displacement amplification-based approaches were usually <30% complete. PTA-derived genomes also included more associated viruses and biosynthetic gene clusters.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1996

Fault Diagnosis of Power Systems Using Intelligent Systems

The power system operator's need for a reliable power delivery system calls for a real-time or near-real-time Al-based fault diagnosis tool. Such a tool will allow NASA ground controllers to re-establish a normal or near-normal degraded operating state of the EPS (a DC power system) for Space Station Alpha by isolating the faulted branches and loads of the system. And after isolation, re-energizing those branches and loads that have been found not to have any faults in them. A proposed solution involves using the Fault Diagnosis Intelligent System (FDIS) to perform near-real time fault diagnosis of Alpha's EPS by downloading power transient telemetry at fault-time from onboard data loggers. The FDIS uses an ANN clustering algorithm augmented with a wavelet transform feature extractor. This combination enables this system to perform pattern recognition of the power transient signatures to diagnose the fault type and its location down to the orbital replaceable unit. FDIS has been tested using a simulation of the LeRC Testbed Space Station Freedom configuration including the topology from the DDCU's to the electrical loads attached to the TPDU's. FDIS will work in conjunction with the Power Management Load Scheduler to determine what the state of the system was at the time of the fault condition. This information is used to activate the appropriate diagnostic section, and to refine if necessary the solution obtained. In the latter case, if the FDIS reports back that it is equally likely that the faulty device as 'start tracker #1' and 'time generation unit,' then based on a priori knowledge of the system's state, the refined solution would be 'star tracker #1' located in cabinet ITAS2. It is concluded from the present studies that artificial intelligence diagnostic abilities are improved with the addition of the wavelet transform, and that when such a system such as FDIS is coupled to the Power Management Load Scheduler, a faulty device can be located and isolated from the rest of the system. The benefit of these studies provides NASA with the ability to quickly restore the operating status of a space station from a critical state to a safe degraded mode, thereby saving costs in experimentation rescheduling, fault diagnostics, and prevention of loss-of-life.

Momoh, James A.↗
DOE OSTI2023

DFT-based mesoscopic interactions of N adatoms on Cu(100)

The first-principles density functional theory (DFT) method is used to directly calculate the interactions of N atoms of various configurations on Cu(100) surfaces. This allows us to derive a mesoscopic substratemediated interaction model. We find that, for these Cu(100)-supported two-dimensional N clusters, oscillating substrate-mediated interactions obtained from an elastic eigenvector approach including a mesoscopic interacting range (called the mesoscopic model) have reasonable agreement with the DFT results. The DFT periodic boundary conditions are properly mapped into the mesoscopic model. The model is used to analyze the energies of c(2×2) square islands independent of their sizes. Previous experimental studies have shown that, in the low coverage region, N atoms agglomerate to isolated square islands of about 5 nm × 5 nm in size with a c(2×2) structure. With increasing coverage, those islands form regular patterns but do not touch below about 0.4 monolayers. From previous experiments and calculations, the square island pattern shows significant elastic effects which are now confirmed.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2024

MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes

While numerous computational frameworks and workflows are available for recovering prokaryote and eukaryote genomes from metagenome data, only a limited number of pipelines are designed specifically for viromics analysis. With many viromics tools developed in the last few years alone, it can be challenging for scientists with limited bioinformatics experience to easily recover, evaluate quality, annotate genes, dereplicate, assign taxonomy, and calculate relative abundance and coverage of viral genomes using state-of-the-art methods and standards. Here, we describe Modular Viromics Pipeline (MVP) v.1.0, a user-friendly pipeline written in Python and providing a simple framework to perform standard viromics analyses. MVP combines multiple tools to enable viral genome identification, characterization of genome quality, filtering, clustering, taxonomic and functional annotation, genome binning, and comprehensive summaries of results that can be used for downstream ecological analyses. Overall, MVP provides a standardized and reproducible pipeline for both extensive and robust characterization of viruses from large-scale sequencing data including metagenomes, metatranscriptomes, viromes, and isolate genomes. As a typical use case, we show how the entire MVP pipeline can be applied to a set of 20 metagenomes from wetland sediments using only 10 modules executed via command lines, leading to the identification of 11,656 viral contigs and 8,145 viral operational taxonomic units (vOTUs) displaying a clear beta-diversity pattern. Further, acting as a dynamic wrapper, MVP is designed to continuously incorporate updates and integrate new tools, ensuring its ongoing relevance in the rapidly evolving field of viromics. MVP is available at https://gitlab.com/ccoclet/mvp and as versioned packages in PyPi and Conda.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1987

What are cirrus point sources?

Most cirrus point sources are associated with interstellar gas. A subset of these was isolated, together with other sources showing large band 4 to 3 flux density ratios, that are not associated with interstellar gas. Most of the point sources are associated with diffuse cirrus emissions. The sources appear to be distributed randomly on the sky, with the exception of six clusters, one of which is not associated with any known object. Six sources out of seventeen that were observed for redshifted H I at Arecibo were found to be associated with relatively nondescript external galaxies. Most of the sources do not appear on the Palomar Sky Survey. Deep optical observations of eight fields revealed some fairly distant galaxies, one object with a very peculiar optical spectrum, and several blank fields.

Heiles, Carl↗
NASA NTRS2022

Chile Wildfires: Utilizing NASA and NOAA Earth Observations to Determine Lightning-ignited Wildfire Risks in Central Chile

In recent years, Central Chile has experienced wildfires of increasing frequency and intensity which threaten natural resources and communities. The Corporación Nacional Forestal (CONAF) responds to wildfires caused by a variety of ignitions, including lightning, but it is difficult to determine the prevalence of lightning-ignited wildfires based solely on ground observations. In collaboration with CONAF and the Embassy of Chile, Agricultural Office, the team used Earth observations to map coincidence of lightning strikes and wildfire ignitions. The Active Fire Product of Suomi NPP Visible Infrared Imaging Radiometer Suite (VIIRS) identified wildfires as thermal anomalies, which the team compared to the lightning events detected by NOAA’s GOES-16 Geostationary Lightning Mapper (GLM). Next, the team mapped lightning strike frequency and lightning related wildfires across the study area. Finally, the team calculated and mapped a relative estimate of lightning-ignited wildfire vulnerability across the year, fire season (December – March), and off-season (April – November) by summing the following factors: lightning frequency, the Normalized Difference Moisture Index (NDMI) and land surface temperature (LST). These risks were then weighted by fuel availability. Preliminary analysis of the lightning fire relationship showed a spatiotemporal coincidence, primarily in the South-central region of study, near Temuco, and isolated areas on the Andean front. The team identified areas at risk of lightning-induced wildfires, predominantly in the northern third of the study area and along the Andean front. Adjusting the relative weight of risk factors and improving the lightning and fire coincidence map by clustering VIIRS thermal anomalies into fire events could reduce discrepancies and improve risk assessments for future work.

Christopher Matechik↗
DOE OSTI2023

Variation in Sphingomonas traits across habitats and phylogenetic clades

Whether microbes show habitat preferences is a fundamental question in microbial ecology. If different microbial lineages have distinct traits, those lineages may occur more frequently in habitats where their traits are advantageous. Sphingomonas is an ideal bacterial clade in which to investigate how habitat preference relates to traits because these bacteria inhabit diverse environments and hosts. Here we downloaded 440 publicly available Sphingomonas genomes, assigned them to habitats based on isolation source, and examined their phylogenetic relationships. We sought to address whether: (1) there is a relationship between Sphingomonas habitat and phylogeny, and (2) whether there is a phylogenetic correlation between key, genome-based traits and habitat preference. We hypothesized that Sphingomonas strains from similar habitats would cluster together in phylogenetic clades, and key traits that improve fitness in specific environments should correlate with habitat. Genome-based traits were categorized into the Y-A-S trait-based framework for high growth yield, resource acquisition, and stress tolerance. We selected 252 high quality genomes and constructed a phylogenetic tree with 12 well-defined clades based on an alignment of 404 core genes. Sphingomonas strains from the same habitat clustered together within the same clades, and strains within clades shared similar clusters of accessory genes. Additionally, key genome-based trait frequencies varied across habitats. We conclude that Sphingomonas gene content reflects habitat preference. This knowledge of how environment and host relate to phylogeny may also help with future functional predictions about Sphingomonas and facilitate applications in bioremediation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Characterizing Polyoxovanadate‐Alkoxide Clusters Using Vanadium K‐Edge X‐Ray Absorption Spectroscopy

Abstract A number of technologies would benefit from developing inorganic compounds and materials with specific electronic and magnetic exchange properties. Unfortunately, designing compounds with these properties is difficult because metal⋅⋅⋅metal coupling schemes are hard to predict and control. Fully characterizing communication between metals in existing compounds that exhibit interesting properties could provide valuable insight and advance those predictive capabilities. One such class of molecules are the series of Lindqvist iron‐functionalized and hexavanadium polyoxovanadate‐alkoxide clusters, which we characterized here using V K‐edge X‐ray absorption spectroscopy. Substantial changes in the pre‐edge peak intensities were observed that tracked with the V 3 d ‐electron count. The data also suggested substantial delocalization between the vanadium cations. Meanwhile, the Fe III cations were electronically isolated from the polyoxovanadate core.

Meyer, Rachel L.↗
NASA NTRS2016

Automated Storm Tracking and the Lightning Jump Algorithm Using GOES-R Geostationary Lightning Mapper (GLM) Proxy Data

This study develops a fully automated lightning jump system encompassing objective storm tracking, Geostationary Lightning Mapper proxy data, and the lightning jump algorithm (LJA), which are important elements in the transition of the LJA concept from a research to an operational based algorithm. Storm cluster tracking is based on a product created from the combination of a radar parameter (vertically integrated liquid, VIL), and lightning information (flash rate density). Evaluations showed that the spatial scale of tracked features or storm clusters had a large impact on the lightning jump system performance, where increasing spatial scale size resulted in decreased dynamic range of the system's performance. This framework will also serve as a means to refine the LJA itself to enhance its operational applicability. Parameters within the system are isolated and the system's performance is evaluated with adjustments to parameter sensitivity. The system's performance is evaluated using the probability of detection (POD) and false alarm ratio (FAR) statistics. Of the algorithm parameters tested, sigma-level (metric of lightning jump strength) and flash rate threshold influenced the system's performance the most. Finally, verification methodologies are investigated. It is discovered that minor changes in verification methodology can dramatically impact the evaluation of the lightning jump system.

lightning jump↗
NASA NTRS1992

The relation of dust and atomic gas properties of galaxies

The way in which the neutral atomic hydrogen and far-IR emission from galaxies relate to their environments is shown. It is found that isolated and interacting galaxies display a fairly narrow range of a temperature-adjusted 'H I/100-micron index', suggesting that atomic gas-to-dust ratios are relatively constant among most galaxies. Isolated normal galaxies are used to develop a fiducial standard for the H I/100-micron index, against which galaxies in other environments are compared. Galaxies undergoing tidal interactions prove to have the same value for the index once the proper temperature adjustment is applied according to their FIR color. Applied to clusters, the H I/100-micron index shows a clear discrimination between galaxies whose H I is 'stripped' or 'unstripped', implying that there is about 6 times less H I in stripped galaxies relative to the 100-micron-emitting dust. The stripped galaxies also appear to have a slightly lower mean dust temperature, which is surprising since the stripping process might be expected to remove preferentially cooler than average dust from the outer disk.

Spitzak, John G.↗
DOE OSTI2025

Survey of Thirteen Novel Pseudomonas putida Bacteriophages

Bacteriophages have been widely investigated as a promising treatment of food, medical equipment, and humans colonized by antibiotic-resistant bacteria. Phages pose particular interest in combating those bacteria which form biofilms, such as the medically important human pathogen Pseudomonas aeruginosa and several plant pathogens, including P. syringae . In an undergraduate lab course, P. putida was used as the host to isolate novel anti-pseudomonal bacteriophages. Environmental samples of soil and water were collected, and purified phage isolates were obtained. After Illumina sequencing, genomes of these phages were assembled de novo and annotated. Assembled genomes were compared with known genomes in the literature and GenBank to identify taxonomic relations and to refine their functional annotations. The thirteen phages described are sipho-, myo-, and podoviruses in several families of Caudoviricetes , spanning several novel genera, with genomes ranging from 40,000 to 96,000 bp. One phage (DDSR119) is unique and is the first reported P. putida siphovirus. The remaining 12 can be clustered into four distinct groups. Six are highly related to each other and to previously described Autotranscriptaviridae phages: Waldo5, PlaquesPlease, and Laces98 all belong to the Waldovirus genus, whereas Stalingrad, Bosely, and Stamos belong to the Troedvirus genus. Zuri was previously classified as the founding member of a new genus Zurivirus within the family Schitoviridae . Ebordelon and Holyagarpour each represent different species within Zurivirus , whereas Meara is a more distantly related member of the Schitoviridae . Dolphis and Jeremy are similar enough to form a genus but have only a few distant relatives among sequenced phages and are notable for being temperate. We identified the lysis cassettes in all 13 phages, compared tail spike structures, and found auxiliary metabolic genes in several. Studies like these, which isolate and characterize infectious virions, enable the identification of novel proteins and molecular systems and also provide the raw materials for further study, evaluation, and manipulation of phage proteins and their hosts.

Pseudomonas putida↗