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At least 379 records · Page 21

TES: Modelling Microbes to Predict Post-Fire Carbon Cycling in the Boreal Forest across Burn Severities (Exploratory Proposal)

Wildfires in boreal ecosystems represent a globally significant ecological process that is expected to be sensitive to changing climate as well as forest management strategies, but is currently insufficiently understood and represented in models. We sought to determine whether linking belowground microbial community composition, size, and activity to aboveground properties of burn severity and plant community composition (upland jack pine and upland spruce) would allow us to better model post-fire soil CO 2 fluxes using the Carbon, Organisms, Rhizosphere and Protection in the Soil Environment (CORPSE) model. We used an integrated modelling experimental approach, with mechanistic laboratory experiments designed to inform models.

54 ENVIRONMENTAL SCIENCES↗

Bayesian Fit to NOvA Data Subsamples for Three Flavor Oscillation Analysis

NOvA (NuMI Off-Axis $\nu_e$ Appearance) is a long baseline neutrino experiment designed to measure the oscillation of muon neutrinos to electron neutrinos over a distance of 810 km. NOvA uses a near and far detector to observe $\nu_\mu$ disappearance and $\nu_e$ appearance of neutrinos produced by the NuMI beam at Fermilab. NOvA uses a Bayesian analysis framework in addition to its Frequentist method to measure neutrino oscillation parameters such as the mixing angles, mass ordering, and CP-violating phase. We report preliminary results of Bayesian fits to representative NOvA datasets. Comparison of fits to $\nu_\mu$ disappearance and $\nu_e$ appearance enables a cross-check of NOvA results with reactor $\bar{\nu_e}$ disappearance measurements. NOvA also searches for violation of Lorentz invariance by analyzing fits of forward horn current (FHC) versus reverse horn current (RHC) samples. The results validate and advance NOvA's contributions to precision measurements of neutrino properties.

Zhao, Larry [Fermilab]↗

Studying MeV Scale Neutron Interactions in DUNE ND-LAr 2x2 Demonstrator

The Deep Underground Neutrino Experiment (DUNE) is a long-baseline neutrino oscillation experiment designed to make high-precision measurements of neutrino oscillation parameters and probe for new physics using a neutrino beam produced at Fermilab and measured at a near detector complex and a far detector located 1,300 km away at the Sanford Underground Research Facility. Precise neutrino energy reconstruction is essential for these measurements, with neutron production in neutrino–argon interactions representing a significant source of systematic uncertainty, as neutrons can carry away significant energy, making their detection and characterization crucial. DUNE’s near detector complex includes ND-LAr, a Liquid Argon Time Projection Chamber (LArTPC) detector designed to mirror the far detector technology and constrain neutrino–argon interaction systematics. The DUNE 2x2 Demonstrator, a pixelated LArTPC based on the ArgonCube design, serves as a prototype for ND-LAr. During 2x2 operations from October to November 2026, an Americium–Beryllium (AmBe) neutron source was deployed near the detector cryostat to obtain a high-statistics sample of neutron interactions. This poster presents progress in studying MeV-scale neutron interactions in this dataset by identifying de-excitation gammas from neutron capture on argon, providing a method for neutron identification and charge readout system calibration in future DUNE detectors.

Mao, Edgar [Syracuse U.] (ORCID:0009000600893306)↗

Event Selection at the DUNE Near Detector

The Deep Underground Neutrino Experiment (DUNE) is a next generation long-baseline experiment designed with a primary goal of providing definitive measurements of the neutrino mass ordering and the Charge Parity (CP)-violating phase. A key component in reaching these goals is the DUNE Near Detector (ND) complex, placed 574 m from the beam target, and tasked with characterising the neutrino beam and constraining systematic uncertainties before oscillation effects occur. We will present primary findings from the development of an event selection for $\nu_\mu$ CC interactions within the ND liquid argon time projection chamber (ND-LAr). These findings will include a discussion of the importance of defining metrics, such as efficiency and purity, such that we can meet the required sensitivity for DUNE's physics measurements.

Sabater Andres, Eva [Sussex U.] (ORCID:00090001748↗

Regression Convolutional Neural Network for Energy Estimation in NOvA

Regression Convolutional Neural Network for Energy Estimation in NOvA" Abstract: "NOvA (NuMI Off-Axis $\nu_e$ Appearance) is a long baseline neutrino experiment designed to measure neutrino oscillations over a distance of 810 km. NOvA employs a near and far detector to observe $\nu_\mu$ disappearance and $\nu_e$ appearance of neutrinos produced by the NuMI beam at Fermilab. Energy reconstruction is critical for precise measurements of neutrino oscillation parameters and cross sections, which are functions of neutrino energy. Energy estimation remains difficult due to the complexity of detector response and final state particle kinematics. We present a regression-based convolutional neural network (CNN) method that reconstructs neutrino and lepton energies based on raw pixel inputs for NOvA. The trained model is able to reconstruct event energy for different interaction modes and complex final states containing leptons and hadrons. Studies of regression CNN networks show improved energy resolution and reduced sensitivity to calibration scale uncertainties relative to traditional kinematics-based energy reconstruction techniques. The results demonstrate the potential of the regression CNN method for neutrino physics analyses by improving on standard kinematics-based reconstruction.

Zhao, Larry [UC, Irvine (main)]↗

PMIP: Looking back to its first phase

The Paleoclimate Modelling Intercomparison Project celebrates its 30th anniversary in 2021. The first phase initiated systematic model-model and model-data comparisons for the Last Glacial Maximum and Mid-Holocene. Here, we describe the historical context of PMIP, the experiment design, and the project’s early impacts.

58 GEOSCIENCES↗

GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics

Data package for Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon This data is published under a CC0 license. The authors encourage data reuse and request attribution by referencing the below citations for the data packages and associated manuscript. Please cite as: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics. [Data Set] PNNL DataHub. doi: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. MSV000097435: GLBRC soil yearlong incubation 13C-SIP-Lipidomics [Data Set] MassIVE. doi:10.25345/C57659T3K Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon. In Prep This data package consists of compound-specific 13C SIP-lipidomics data from a yearlong tracer incubation experiment designed to investigate microbial lipid persistence in switchgrass bioenergy crop soils. In order to explore how lipid structure may modulate the persistence of C in soil lipids, we leveraged soils from two sites (Michigan - sandy texture, Wisconsin - silty texture) operated by the U.S. Department of Energy-funded Great Lakes Bioenergy Research Center (GLBRC). These sites had comparable climates, identical management practices, but contrasting soil textures, allowing us to assess the variability of lipid accrual or degradation in soils as well as provide insight regarding the degree to which edaphic properties may regulate the retention of soil lipids. Untargeted lipidomics analyses were performed to identify 13C-labeled lipids in the soil microbiome after long-term incubation. Soils were supplemented with 100 micrograms glucose per gram dry soil (99 atom % 13C or natural abundance for paired control) and incubated; samples were collected two months and one year after glucose addition. Lipid extracts (MPLEx) were analyzed by LC-MS/MS and identified using LIQUID. Calculation of isotopic enrichment of lipids was performed by targeted approach using TarMet to quantify lipid isotopologues and IsoCorrectoR to correct for natural abundance isotopes. Contents: Data package contents reported here are the first version and contain downstream analysis files for the raw LC-MS mass spectrometry files (.mzXML) deposited at the MassIVE database repository under accession MSV000097435 (80 experimental runs; 5.85 GB) | MassIVE DOI: 10.25345/C57659T3K. Support files include the additional data download 'Read Me' file containing data descriptor information. Reported data download contents are structured for compliance with project data sharing guidelines, community standards initiatives, and sponsor stakeholder policies supporting FAIR data principles. Data processing software, analysis tools, and data workflows are listed below corresponding to the host repository long-term location. Available Data Downloads (0.3 GB): "GLBRC soil yearlong incubation 13C-SIP-Lipidomics_readme.txt" - 'Read Me' data package content file (txt) "GLBRC_DataPackage_analysis files" - Data processing files (Rmd) and saved intermediate data processing outputs (rds, csv, xlsx) "GLBRC_13C_lipidomics_dataset.xlsx" - processed data in tabular format (xlsx) Linked Software: LIQUID LC-MS Analysis Software | 10.5281/zenodo.6459462 Lipid Mini-On Software Tools | 10.5281/zenodo.1492803 pmartR Omics Statistical Software | 10.5281/zenodo.6108667 xcms (v4.3.3) TarMet (v1.1.1) IsoCorrectoR (1.24.0) Funding Acknowledgments: This research was supported by an Early Career Research Program award funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research (OBER) Genomic Science program under FWP 68292, FWP 07880 and EMSL Exploratory Research Project 51095. A portion of this work was performed in the William R. Wiley Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by OBER and located at Pacific Northwest National Laboratory (PNNL). PNNL is a multi-program national laboratory operated by Battelle for the DOE under Contract DE-AC05-76RLO1830.

Rempfert, Kaitlin R [Pacific Northwest National La↗

Beneficiation of Bastnaesite Ore with New Flotation Collector Ligands

Interest in Rare Earth Elements (REEs) has increased due to their distinct properties and new applications. China currently has a monopoly on rare earth production due to the lack of an economically viable process used outside of China. Bastnaesite, a rare earth fluorocarbonate, is one of the most common minerals containing REEs, which is mostly comprised of cerium and other light REEs. The objective of this research is to find a novel collector for the beneficiation of bastnaesite through froth flotation experiments to increase the grade and recovery of rare earth oxides while rejecting the major gangue minerals. Microflotation and rougher bench flotation studies were evaluated to find optimal collector(s) from 19 possible candidates. Collectors 2, 5, and 8 were the top performing collectors chosen from microflotation experiments. A design of experiment matrix was set up to evaluate the variables, variable interactions, and provide a reference matrix for future optimization studies. Collector 2 was assessed to be the optimal collector. A rougher flotation experiment produced a rare earth oxide grade and recovery of 41% and 78%, respectively with a 91.5% rejection of calcite. Collector 8 and 14 also showed promising results to replace fatty acid. As such, this patent pending technology can serve to provide a pathway for efficient domestic REE production.

36 MATERIALS SCIENCE↗

Thermal field reconstruction and compressive sensing using proper orthogonal decomposition

Model order reduction allows critical information about sensor placement and experiment design to be distilled from raw fluid mechanics simulation data. In many cases, sensed information in conjunction with reduced order models can also be used to regenerate full field variables. In this paper, a proper orthogonal decomposition (POD) inferencing method is extended to the modeling and compressive sensing of temperature, a scalar field variable. The method is applied to a simulated, critically stable, incompressible flow over a heated cylinder (Re = 1000) with Prandtl number varying between 0.001 and 50. The model is trained on pressure and temperature data from simulations. Field reconstructions are then generated using data from selected sensors and the POD model. Finally, the reconstruction error is evaluated across all Prandtl numbers for different numbers of retained modes and sensors. The predicted trend of increasing reconstruction accuracy with decreasing Prandtl number is confirmed and a Prandtl number/sensor count error matrix is presented.

Matulis, John↗

Physics in the Machine: Integrating Physical Knowledge in Autonomous Phase-Mapping

Application of artificial intelligence (AI), and more specifically machine learning, to the physical sciences has expanded significantly over the past decades. In particular, science-informed AI, also known as scientific AI or inductive bias AI, has grown from a focus on data analysis to now controlling experiment design, simulation, execution and analysis in closed-loop autonomous systems. The CAMEO (closed-loop autonomous materials exploration and optimization) algorithm employs scientific AI to address two tasks: learning a material system’s composition-structure relationship and identifying materials compositions with optimal functional properties. By integrating these, accelerated materials screening across compositional phase diagrams was demonstrated, resulting in the discovery of a best-in-class phase change memory material. Key to this success is the ability to guide subsequent measurements to maximize knowledge of the composition-structure relationship, or phase map. In this work we investigate the benefits of incorporating varying levels of prior physical knowledge into CAMEO’s autonomous phase-mapping. This includes the use of ab-initio phase boundary data from the AFLOW repositories, which has been shown to optimize CAMEO’s search when used as a prior.

97 MATHEMATICS AND COMPUTING↗

Building MCP-native hierarchical AI scientist ecosystems: a perspective on scaling multi-agent scientific discovery

Large language models (LLMs) are evolving from chatbots with limited tool-using capabilities to agentic AI systems that can perform deep research, assist in proposing hypotheses, help design experiments, automate data analysis, and draft scientific reports. However, there are currently two bottlenecks limiting LLMs' real-world impact on the broader scientific research community beyond academic demonstrations: lack of interoperability (repetitive manual tool-integration is required across scenarios) and the need for scalable coordination (unstructured communication and memory become brittle as the number of agents grows). In this Perspective, we argue that the next phase of agentic scientific discovery requires the development of an ecosystem of protocol-native agents and tools organized through hierarchies inspired by human society, beyond the current paradigm of a single monolithic “AI scientist”. We use Model Context Protocol (MCP) as a concrete example of an emerging interoperability layer for scientific tool and context exchange, and we propose three complementary pathways to increase the scaling capabilities of an MCP-native scientific ecosystem by addressing the composability issues: (1) MCP servers for high-value scientific tools maintained by domain experts, (2) automated transformation of existing code repositories into MCP services, and (3) autonomous invention and evolution of new agents and workflows. Finally, we provide a practical roadmap for scaling AI-driven scientific discovery by expanding tool supply and coordination in MCP-native scientific ecosystems.

97 MATHEMATICS AND COMPUTING↗

The Magnitude and Waveform of Shock Waves Induced by X-ray Lasers in Water

The high energy densities deposited in materials by focused X-ray laser pulses generate shock waves which travel away from the irradiated region, and can generate complex wave patterns or induce phase changes. We determined the time-pressure histories of shocks induced by X-ray laser pulses in liquid water microdrops, by measuring the surface velocity of the microdrops from images recorded during the reflection of the shock at the surface. Measurements were made with ~30 µm diameter droplets using 10 keV X-rays, for X-ray pulse energies that deposited linear energy densities from 3.5 to 120 mJ/m; measurements were also made with ~60 µm diameter drops for a narrower energy range. At a distance of 15 µm from the X-ray beam, the peak shock pressures ranged from 44 to 472 MPa, and the corresponding time-pressure histories of the shocks had a fast quasi-exponential decay with positive pressure durations estimated to range from 2 to 5 ns. Knowledge of the amplitude and waveform of the shock waves enables accurate modeling of shock propagation and experiment designs that either maximize or minimize the effect of shocks.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A Numerical Model for Enzymatically Induced Calcium Carbonate Precipitation

Enzymatically induced calcium carbonate precipitation (EICP) is an emerging engineered mineralization method similar to others such as microbially induced calcium carbonate precipitation (MICP). EICP is advantageous compared to MICP as the enzyme is still active at conditions where microbes, e.g., Sporosarcina pasteurii , commonly used for MICP, cannot grow. Especially, EICP expands the applicability of ureolysis-induced calcium carbonate mineral precipitation to higher temperatures, enabling its use in leakage mitigation deeper in the subsurface than previously thought to be possible with MICP. A new conceptual and numerical model for EICP is presented. The model was calibrated and validated using quasi-1D column experiments designed to provide the necessary data for model calibration and can now be used to assess the potential of EICP applications for leakage mitigation and other subsurface modifications.

42 ENGINEERING↗

An Empirical Study on the Use of the Rancor Microworld Simulator to Support Full-scope Data Collection

A lack of data has been identified as a major challenge in human reliability analysis (HRA). Accordingly, several institutes and researchers have tried to collect HRA data from different data sources such as actual historical measurements, expert judgements, or simulator studies. While the most recent studies predominantly focus on collecting data using full-scope simulators with actual operators, Idaho National Laboratory (INL) has begun to collect HRA data using a simplified simulator, i.e., the Rancor Microworld simulator, with student participants. Full-scope studies have been known to have several intrinsic challenges to securing enough quantity of the data due to many reasons like the high cost for performing experiments or requiring actual operators’ cooperation. The ultimate goal of INL’s effort aims to infer actual operators’ data collected from a full-scope simulator on the basis of microworld data with student subjects as well as collect additional data that could be missed in the full-scope research. As a first step to achieve this goal, this paper projects an experimental plan for investigating the differences in human performance between individuals in two groups: 1) an actual operator and 2) a student when using the Rancor Microworld simulator. A randomized factorial experiment design has been developed with two independent variables, i.e., type of scenario and type of subject. Six human performance measures, i.e., 1) time, 2) error, 3) workload, 4) situation awareness, 5) patterns of attention and 6) the number of manipulations were selected. A couple of scenarios and their procedures available to the Rancor Microworld simulator have been developed.

99 GENERAL AND MISCELLANEOUS↗

Ideas and perspectives: Enhancing research and monitoring of carbon pools and land-to-atmosphere greenhouse gases exchange in developing countries

Carbon (C) and greenhouse gas (GHG) research has traditionally required data collection and analysis using advanced and often expensive instruments, complex and proprietary software, and highly specialized research technicians. Partly as a result, relatively little C and GHG research has been conducted in resource-constrained developing countries. At the same time, these are often the same countries and regions in which climate change impacts will likely be strongest and in which major science uncertainties are centered, given the importance of dryland and tropical systems to the global C cycle. Increasingly, scientific communities have adopted appropriate technology and approach (AT&A) for C and GHG research, which focuses on low-cost and low-technology instruments, open-source software and data, and participatory and networking-based research approaches. Adopting AT&A can mean acquiring data with fewer technical constraints and lower economic burden and is thus a strategy for enhancing C and GHG research in developing countries. However, AT&A can have higher uncertainties; these can often be mitigated by carefully designing experiments, providing clear protocols for data collection, and monitoring and validating the quality of obtained data. For implementing this approach in developing countries, it is first necessary to recognize the scientific and moral importance of AT&A. At the same time, new AT&A techniques should be identified and further developed. All these processes should be promoted in collaboration with local researchers and through training local staff and encouraged for wide use and further innovation in developing countries.

Kim, Dong-Gill↗

ASNF Engineering Scale Drying Experiment Acceptance Criteria for Fabricated Items

This document specifies the acceptance criteria for items fabricated by Holtec International under the scope of INL Contract # 215725, consistent with the parameters described in INL/EXT-19-56017, Aluminum-clad Spent Nuclear Fuel Engineering Scale Drying Experiment Design. Verification is confirmed with initials (or the need for remediation may be identified) along with the date of inspection for each requirement. Verification may be performed by independent proxy (University of South Carolina participant, under INL Contract Number 207046) or by an INL employee, remotely by camera images.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Thermal Analysis Evaluations Using the Dry Cask Simulator

Different thermal analysis models were developed to simulate the dry cask simulator (DCS). The DCS is an experiment designed to simulate dry storage of a single boiling water reactor fuel assembly under a variety of heat loads and internal pressures. The DCS was set up and tested in both a vertical and horizontal configuration to determine cladding temperatures in vertical and horizontal dry cask storage systems. The models included a detailed STAR-CCM+ model with the fuel assembly geometry explicitly modeled, a porous STAR-CCM+ model with the fuel assembly geometry modeled as porous media region with calculated effective properties, and a COBRA-SFS model. COBRA-SFS is a thermal-hydraulic code developed for steady-state and transient analysis of multi assembly spent-fuel storage and transportation systems. STAR-CCM+ is a commercial computation fluid dynamics (CFD) code. Both a detailed and porous STARCCM+ model were developed to look at the effective thermal conductivity (keff) approach to modeling a fuel assembly. A keff fuel model is typically model in CFD thermal analyses due to its significantly lower computational costs. The models were run for a combination of low and high canister pressures (100 kPa and 800 kPa) and low and high internal heat loads (0.5 kW and 5 kW). Results from all three models were compared against experimental data taken from the DCS for the peak cladding temperature (PCT) and inlet air mass flow.

Suffield, Sarah R.↗

Modeling of HTTF test PG-26 using RELAP5-3D and SAM

The High Temperature Test Facility (HTTF) at Oregon State University (OSU) is a scaled integral effects experiment designed to investigate transient behavior in high-temperature gas-cooled nuclear reactors (HTGR) with prismatic fuel and reflector blocks [1]. Several tests have been completed at the HTTF including depressurized conduction cooldown (DCC) and pressurized conduction cooldown (PCC) transients. This summary reports on the analysis of test PG-26 using the INL system code REALP5-3D [2] as well as the ANL system code SAM [3]. Test PG-26 is a progression of the Double Ended Inlet-Outlet Crossover Duct Break transient that is referred to as a DCC [4]. Core initial conditions (i.e., before the DCC started) have been met using low power (<100 kW) and two of ten available electric heater banks. The DCC transient was initiated during the 50th hour of the test. The break valves were opened, and hot helium from the core and cold helium from the reactor cavity simulation tank (RCST) started mixing. The gases flowed in a countercurrent fashion, where the top half of the hot duct contained hot helium that flowed in one direction and cold helium that flowed in the other direction in the bottom half of the duct. After the pressure and density reached equilibrium, the event entered a diffusion mode. The onset of a reverse natural circulation was not observed during the DCC period of the test.

97 MATHEMATICS AND COMPUTING↗