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All sources NASA NTRS DOE OSTI

DOE OSTI2020

Crowd-Sourced Data and Analysis Tools for Advancing the Chemical Vapor Deposition of Graphene: Implications for Manufacturing

Industrial production of graphene by chemical vapor deposition (CVD) requires more than the ability to synthesize large domain, high-quality graphene in a lab reactor. The integration of graphene in the fabrication process of electronic devices requires the cost-effective and environmentally friendly production of graphene on dielectric substrates, but current approaches can only produce graphene on metal catalysts. Sustainable manufacturing of graphene should also conserve the catalyst and reaction gases, but today the metal catalysts are typically dissolved after synthesis. Progress toward these objectives is hindered by the hundreds of coupled synthesis parameters that can strongly affect CVD of low-dimensional materials and poor communication in the published literature of the rich experimental data that exists in individual laboratories. We report here on a platform, "graphene recipes for synthesis of high quality material" (Gr-ResQ: pronounced graphene rescue), which includes powerful new tools for data-driven graphene synthesis. At the core of Gr-ResQ is a crowd-sourced database of CVD synthesis recipes and associated experimental results. The database captures similar to 300 parameters ranging from synthesis conditions such as a catalyst material and preparation steps, to ambient lab temperature and reactor details, as well as resulting Raman spectra and microscopy images. These parameters are carefully selected to unlock the potential of machine-learning models to advance synthesis. A suite of associated tools enable fast, automated, and standardized processing of Raman spectra and scanning electron microscopy images. To facilitate community-based efforts, Gr-ResQ provides tools for cyber-physical collaborations among research groups, allowing experiments to be designed, executed, and analyzed by different teams. Gr-ResQ also allows publication and discovery of recipes via the Materials Data Facility, which assigns each recipe a unique identifier when published and collects parameters in a search index. We envision that this holistic approach to data-driven synthesis can accelerate CVD recipe discovery and production control and open opportunities for advancing not only graphene but also many other 1D and 2D materials.

36 MATERIALS SCIENCE↗

DOE OSTI2023

BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

BigNeuron is an open community bench-testing platform with the goal of setting open standards for accurate and fast automatic neuron tracing. We gathered a diverse set of image volumes across several species that is representative of the data obtained in many neuroscience laboratories interested in neuron tracing. Here, we report generated gold standard manual annotations for a subset of the available imaging datasets and quantified tracing quality for 35 automatic tracing algorithms. The goal of generating such a hand-curated diverse dataset is to advance the development of tracing algorithms and enable generalizable benchmarking. Together with image quality features, we pooled the data in an interactive web application that enables users and developers to perform principal component analysis, t-distributed stochastic neighbor embedding, correlation and clustering, visualization of imaging and tracing data, and benchmarking of automatic tracing algorithms in user-defined data subsets. The image quality metrics explain most of the variance in the data, followed by neuromorphological features related to neuron size. Furthermore, we observed that diverse algorithms can provide complementary information to obtain accurate results and developed a method to iteratively combine methods and generate consensus reconstructions. The consensus trees obtained provide estimates of the neuron structure ground truth that typically outperform single algorithms in noisy datasets. However, specific algorithms may outperform the consensus tree strategy in specific imaging conditions. Finally, to aid users in predicting the most accurate automatic tracing results without manual annotations for comparison, we used support vector machine regression to predict reconstruction quality given an image volume and a set of automatic tracings.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Prospects of federated machine learning in fluid dynamics

Physics-based models have been mainstream in fluid dynamics for developing predictive models. In recent years, machine learning has offered a renaissance to the fluid community due to the rapid developments in data science, processing units, neural network based technologies, and sensor adaptations. So far in many applications in fluid dynamics, machine learning approaches have been mostly focused on a standard process that requires centralizing the training data on a designated machine or in a data center. In this article, we present a federated machine learning approach that enables localized clients to collaboratively learn an aggregated and shared predictive model while keeping all the training data on each edge device. We demonstrate the feasibility and prospects of such a decentralized learning approach with an effort to forge a deep learning surrogate model for reconstructing spatiotemporal fields. Our results indicate that federated machine learning might be a viable tool for designing highly accurate predictive decentralized digital twins relevant to fluid dynamics.

36 MATERIALS SCIENCE↗

NASA NTRS2002

Earth Science Markup Language: Transitioning From Design to Application

The primary objective of the proposed Earth Science Markup Language (ESML) research is to transition from design to application. The resulting schema and prototype software will foster community acceptance for the "define once, use anywhere" concept central to ESML. Supporting goals include: 1. Refinement of the ESML schema and software libraries in cooperation with the user community. 2. Application of the ESML schema and software libraries to a variety of Earth science data sets and analysis tools. 3. Development of supporting prototype software for enhanced ease of use. 4. Cooperation with standards bodies in order to assure ESML is aligned with related metadata standards as appropriate. 5. Widespread publication of the ESML approach, schema, and software.

Moe, Karen↗

NASA NTRS2018

Steps Toward Improved Integration, Search, and Analysis of Heterogeneous Data in the Astrobiology Habitable Environments Database

The Astrobiology Habitable Environments Database (AHED) is a new data system being developed as a long-term, open-access repository for astrobiology data. AHED is intended to store user-contributed results from NASA or externally-funded research in astrobiology, and to encourage sharing and synergy within the astrobiology community. However, the interdisciplinary nature of astrobiology presents some specific challenges to data management, integration, and analysis within AHED. In some disciplines (e.g., genomics), open databases thrive because the contributed products are fairly uniform and standardized (e.g., sequence data). In astrobiology, each investigation produces a unique set of data products; this makes it difficult to search across different datasets to find similar data, or to combine results from separate investigations. With AHED, we are taking steps to ensure there is adequate metadata - both at the dataset and record levels - to facilitate search, integration, and analysis. At the dataset level, we are developing a new metadata standard for describing astrobiology datasets, with detailed information about content, funding source, and scientific relevance, along with a set of topical keywords for characterizing datasets. At the record level, we are encouraging users to provide more structured content and finer-grained metadata. In many user-contributed science data repositories, few restrictions are placed on the uploaded data format, and minimal or no record-level metadata is required; thus users are unburdened when it comes to data preparation. The tradeoff is that deep integration and search across datasets is almost impossible without standardized structures and metadata. Although AHED users are free to upload minimally-described datasets, they will be encouraged to use database authoring tools (supplied by the underlying platform - Open Data Repository's Data Publisher) plus a set of customizable astrobiology-specific templates to help structure their data and provide standardized metadata. In reward for their extra effort, AHED will be able to deliver enhanced search, discovery, and analysis capabilities.

astrobiology↗

NASA NTRS2018

NASA's Earth Observing Data and Information System - Near-Term Challenges

NASA's Earth Observing System Data and Information System (EOSDIS) has been a central component of the NASA Earth observation program since the 1990's. EOSDIS manages data covering a wide range of Earth science disciplines including cryosphere, land cover change, polar processes, field campaigns, ocean surface, digital elevation, atmosphere dynamics and composition, and inter-disciplinary research, and many others. One of the key components of EOSDIS is a set of twelve discipline-based Distributed Active Archive Centers (DAACs) distributed across the United States. Managed by NASA's Earth Science Data and Information System (ESDIS) Project at Goddard Space Flight Center, these DAACs serve over 3 million users globally. The ESDIS Project provides the infrastructure support for EOSDIS, which includes other components such as the Science Investigator-led Processing systems (SIPS), common metadata and metrics management systems, specialized network systems, standards management, and centralized support for use of commercial cloud capabilities. Given the long-term requirements, and the rapid pace of information technology and changing expectations of the user community, EOSDIS has evolved continually over the past three decades. However, many challenges remain. Challenges addressed in this paper include: growing volume and variety, achieving consistency across a diverse set of data producers, managing information about a large number of datasets, migration to a cloud computing environment, optimizing data discovery and access, incorporating user feedback from a diverse community, keeping metadata updated as data collections grow and age, and ensuring that all the content needed for understanding datasets by future users is identified and preserved.

Remote Sensing↗

DOE OSTI2023

PV Validation Hub

The Validation Hub will be a clearinghouse for the transfer of novel algorithms and software from the PV research community to industry. Potential algorithms tested in the Hub could include the estimation of various PV loss factors and the detection of various operational issues. The primary function of the Hub will be for developers to submit executable code which will run on hosted data sets. Developers will receive private reports on the accuracy and performance (e.g., run-time) of the submitted algorithms, and public high level summaries will be hosted. These summaries will indicate the organization who submitted the algorithm (e.g., links to GitHub pages, documentation websites, etc.), high-level accuracy metrics, and standardized performance metrics. These results will be stored in a publicly available database, accessible through the Hub, with the ability for users to sort and filter the results. In short, the Hub will be presented to public users as a collection of interactive leaderboards, organized around specific analysis tasks pertinent to the PV data science community. These tasks include things such as the estimation of various PV loss factors and the detection of various operational issues. We will present progress on the development of this hub, including preliminary results of comparative validation of PV data science algorithms and progress towards building the platform itself.

algorithm↗

DOE OSTI2024

HPC and Cloud Convergence Beyond Technical Boundaries: Strategies for Economic Sustainability, Standardization, and Data Accessibility

At the IEEE/ACM International Conference for High-Performance Computing, Networking, Storage, and Analysis (SC23), held in Denver, experts discussed the convergence of high-performance computing and cloud computing. Experts explored how this integration could address current scientific computing limitations, enhance computational capabilities, and foster global collaboration while focusing on economic, security, technical, and community challenges and opportunities.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2026

VirJenDB: a FAIR (meta)data and bioinformatics platform for all viruses

High-throughput sequencing has generated an unprecedented volume of data. However, researcher-submitted data in repositories requires extensive curation and quality control for reuse. These tasks are hindered by the multiplicity of repositories, the sheer volume of the data, and the complexity of virus (meta)data curation. To address these challenges, VirJenDB offers a user-friendly platform to facilitate versioned, community-driven curation, and ontology development. Virus sequences were ingested from 16 sources, including ~200 fields of metadata or standards, covering taxonomy, sample, and host information. Up to 85 metadata fields have undergone at least one round of curation, and are linked to 15.4 million virus sequences, with 88 % from those infecting eukaryotes and the remaining infecting prokaryotes. Subsets were created, including a novel collection of 0.91 million viral operational taxonomic unit (vOTU) sequences across all viruses, while keeping the original sequences from each vOTU to facilitate downstream analyses, e.g. sequence variation. The VirJenDB web portal (https://www.virjendb.org) provides HTTPS and Application Programming Interface (API) access to the sequence datasets and metadata, offering a search engine, filtering, download, visualizations, and documentation. VirJenDB aims to connect the phage and eukaryotic virus research communities by supporting webtool integration, meta-analyses, and metadata schema extensions.

Saghaei, Shahram↗

NASA NTRS1993

Global change information support: A north-south coalition

On a daily basis we become more aware that our planet, earth, exists in a delicate balance; we, its inhabitants, must be informed caretakers. Global change communities have emerged around the globe to address this multidisciplinary subject. Information systems that integrate text, bibliographic, numeric and visual data are needed to support these global change communities. No one information center can hope to collect all the relevant data. Rather, we must form a coalition, North and South, to collect and provide access to disparate, multidisciplinary sources of information, and to develop standardized tools for documenting and manipulating this data and information. International resources need to be mobilized in a coordinated manner to move us towards this goal. This paper looks at emerging information technologies that can be utilized to build such a system, and outlines some cooperative North/South strategies.

Blados, Walter R.↗

NASA NTRS1993

Global change information support - A north/south coalition

Blados, Walter R.↗

NASA NTRS2014

A Space Data System Standard for Telerobotic Operations

The Telerobotics Working Group of the Mission Operations and Information Management Services Area of the Consultative Committee for Space Data Systems is drafting a document that will help bound the scope of an eventual international standard for telerobotic operations services. This paper will present the work in progress and provide background for how the international community is beginning to define standards in telerobotic operations that will help ensure the success of complex missions to explore beyond Earth orbit.

Mittman, David S.↗

NASA NTRS2002

The spacecraft onboard interface standardization activity

The Consultative Committee for Space Data Systems (CCSDS) is an international organization of national space agencies (such as NASA in the United States) that is organized to promote the interchange of space related information. Now, CCSDS is branching out to provide new standards for the interchange of information, and the interconnection of subsystems and devices onboard of a spacecraft. This effort is know as Spacecraft Onboard Interface (SOIF). SOIF will publish standards that will allow for the enhanced reuse of spacecraft equipment and software. SOIF expects that these standards will be well known and used within the space community, and that they will be based on or similar to the well-known Internet protocols. This paper will provide a description of the SOIF work by reviewing this work with three orthogonal views. The first of these views is the Protocol view, which describes the protocols and services that are to be implemented in order to provide the users with the advantages of the SOIF architecture. The second of these views is the Services View, which describes the data communications services that are provided to the users. And finally, the Interoperability view provides a description to users how SOIF can be used to interchange between different spacecraft data busses. This paper will give the reader an excellent introduction to the work of the international SOIF team.

spacecraft interfaces standard interfaces CCSDS↗

NASA NTRS2002

The spacecraft onboard interface standardization activity

spacecraft interfaces standard interfaces CCSDS↗

DOE OSTI2022

Validation of standardized data formats and tools for ground-level particle-based gamma-ray observatories

Context. Ground-based γ-ray astronomy is still a rather young field of research, with strong historical connections to particle physics. This is why most observations are conducted by experiments with proprietary data and analysis software, as is usual in the particle physics field. However, in recent years, this paradigm has been slowly shifting toward the development and use of open-source data formats and tools, driven by upcoming observatories such as the Cherenkov Telescope Array (CTA). In this context, a community-driven, shared data format (the gamma-astro-data-format, or GADF) and analysis tools such as Gammapy and ctools have been developed. So far, these efforts have been led by the Imaging Atmospheric Cherenkov Telescope community, leaving out other types of ground-based γ-ray instruments. Aims. We aim to show that the data from ground particle arrays, such as the High-Altitude Water Cherenkov (HAWC) observatory, are also compatible with the GADF and can thus be fully analyzed using the related tools, in this case, Gammapy. Methods. We reproduced several published HAWC results using Gammapy and data products compliant with GADF standard. We also illustrate the capabilities of the shared format and tools by producing a joint fit of the Crab spectrum including data from six different γ-ray experiments. Results. We find excellent agreement with the reference results, a powerful confirmation of both the published results and the tools involved. Conclusions. The data from particle detector arrays such as the HAWC observatory can be adapted to the GADF and thus analyzed with Gammapy. A common data format and shared analysis tools allow multi-instrument joint analysis and effective data sharing. To emphasize this, a sample of Crab nebula event lists is made public with this paper. Because of the complementary nature of pointing and wide-field instruments, this synergy will be distinctly beneficial for the joint scientific exploitation of future observatories such as the Southern Wide-field Gamma-ray Observatory and CTA.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRSDate not supplied

The Impact and Usage of Near Real-Time and Low Latency Solutions from the Satellite Needs Working Group

The Satellite Needs Working Group (SNWG) is an interagency effort of the U.S. Government to identify the Earth observation gaps and data needs across civilian U.S. federal agencies. Within short time frames of 2 to 5 years, on behalf of SNWG, NASA formulates and implements a range of remote sensing-based solutions that benefit the entire Earth Science community and society at large. More than 20 such solutions are underway, with several addressing needs for near real-time and low latency information as a result of priorities identified in the survey. In this talk, we will present and discuss the impact and usage of such solutions, including ICESat-2 Atlas products (data delivered within 72 hours instead of the standard 45-day latency for ATLAS science products), near real-time air quality TEMPO products derived from the recently launched TEMPO mission (these products include SO 2 , NO 2 , HCHO, O 2 -O 2 cloud cover, and aerosols with a planned latency of one hour), and low latency Harmonized Landsat-Sentinel-2 (HLS) data (HLS data with a latency of 6 hours). We will talk about how these solutions are being co-designed by federal agencies to maximize their impact and usage by the scientific community. Finally, we will also invite additional stakeholders and users to get involved in the formulation, implementation, and operationalization of these solutions.

Pontus Olofsson↗

NASA NTRS2016

Ontologies for Aviation Data Management

Managing complex aviation data can be a significant challenge for any enterprise – whether a government agency, airline, airframe manufacturer, or aviation service provider. To handle this challenge, data models are typically developed to characterize and manage the data generated, used, and stored by a given enterprise. Unfortunately, different data providers employ qualitatively different data models, and this gives rise to problems exchanging data across organizational boundaries. Over the past decade, these problems have motivated data producers and consumers to look toward standardized data exchange models to address data interoperability. In this paper we examine some of these standardized data exchange models and compare them with a new type of data model based on ontologies. Ontology models have emerged in recent years from a confluence of research in the artificial intelligence, semantic web, and information science communities. This paper introduces ontology models, provides several use cases for ontologies relevant to aviation data management, and summarizes state of the art aviation prototype applications that utilize ontologies.

artificial intelligence↗

DOE OSTI2024

Common Electric Power Transmission System Model JSON Schema Specification

The Common Electric Power Transmission System Model (CTM) is an intuitive, extensible, language-agnostic, and error-resistant specification of electric power network components parameter names and units, and relation between components, intended for use by the research community developing new computational methods for power systems operations and simulation. Power system datasets following the CTM specification can be read as dictionaries and manipulated in that form in most programming languages (e.g., Python, Julia, C++). This standard data structure in CTM makes it easy to work in multiple power systems domains (e.g., economic operation, reliability assessment, electricity markets, stability assessment, etc.) without requiring conversions between use-case-specific file formats with information loss in the process. This repository specifies CTM as a JSON Schema, provides documentation, derivate (code-generated) implementations of CTM, and example data and usage of the schema for important use cases.

Aravena Solis, Ignacio↗