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All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Spectroscopic classification, variability, and SED of the Fermi -detected CSS 3C 286: the radio-loudest NLS1 galaxy?

ABSTRACT 3C 286 is a well-known calibrator source in radio astronomy. It is also one of very few compact steep-spectrum (CSS) sources detected in γ-rays. Here, we perform a detailed spectroscopic and variability analysis and present the first quasi-simultaneous optical to X-ray spectral energy distribution (SED) in order to reveal physical mechanisms that dominate its emission at different wavelengths, and arrive at a reliable optical source classification. The first main result of our study reveals several pitfalls when applying simple broad- or narrow-line Seyfert 1 (BLS1 or NLS1) classification criteria that only look at the [O iii]–Hβ complex. [O iii] and Hβ can be dominated by the same outflow components, in which case full width at half-maximum (Hβ) is no reliable classification criterion, and extinction by intrinsic or intervening material can make the highest velocity Hβ component undetectable. After careful combination of all information from ultraviolet (UV)–optical spectra along with multiwavelength data, we confirm that 3C 286 can be classified as NLS1 galaxy, with line properties and supermassive black hole mass (of order 108 M⊙ and accreting near the Eddington limit) close to the BLS1 regime, making it an important borderline object. The quasi-simultaneous SED taken with Swift shows a sharp rise in the optical–UV, implying the presence of a strong accretion-disc component with extreme UV excess, consistent with emission-line diagnostics. Finally, we report the discovery of X-ray variability of 3C 286, plausibly dominated by jet emission, and variable by at least a factor of ∼4. This result suggests to exercise caution when using 3C 286 as radio calibrator in high-resolution radio very long baseline interferometry observations.

Yao, Su↗
DOE OSTI2023

The miniJPAS survey quasar selection – II. Machine learning classification with photometric measurements and uncertainties

Astrophysical surveys rely heavily on the classification of sources as stars, galaxies, or quasars from multiband photometry. Surveys in narrow-band filters allow for greater discriminatory power, but the variety of different types and redshifts of the objects present a challenge to standard template-based methods. In this work, which is part of a larger effort that aims at building a catalogue of quasars from the miniJPAS survey, we present a machine learning-based method that employs convolutional neural networks (CNNs) to classify point-like sources including the information in the measurement errors. We validate our methods using data from the miniJPAS survey, a proof-of-concept project of the Javalambre Physics of the Accelerating Universe Astrophysical Survey (J-PAS) collaboration covering ∼1 deg 2 of the northern sky using the 56 narrow-band filters of the J-PAS survey. Due to the scarcity of real data, we trained our algorithms using mocks that were purpose-built to reproduce the distributions of different types of objects that we expect to find in the miniJPAS survey, as well as the properties of the real observations in terms of signal and noise. We compare the performance of the CNNs with other well-established machine learning classification methods based on decision trees, finding that the CNNs improve the classification when the measurement errors are provided as inputs. The predicted distribution of objects in miniJPAS is consistent with the putative luminosity functions of stars, quasars, and unresolved galaxies. Our results are a proof of concept for the idea that the J-PAS survey will be able to detect unprecedented numbers of quasars with high confidence.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

A catalogue of cataclysmic variables from 20 yr of the Sloan Digital Sky Survey with new classifications, periods, trends, and oddities

ABSTRACT We present a catalogue of 507 cataclysmic variables (CVs) observed in SDSS I to IV including 70 new classifications collated from multiple archival data sets. This represents the largest sample of CVs with high-quality and homogeneous optical spectroscopy. We have used this sample to derive unbiased space densities and period distributions for the major sub-types of CVs. We also report on some peculiar CVs, period bouncers and also CVs exhibiting large changes in accretion rates. We report 70 new CVs, 59 new periods, 178 unpublished spectra, and 262 new or updated classifications. From the SDSS spectroscopy, we also identified 18 systems incorrectly identified as CVs in the literature. We discuss the observed properties of 13 peculiar CVS, and we identify a small set of eight CVs that defy the standard classification scheme. We use this sample to investigate the distribution of different CV sub-types, and we estimate their individual space densities, as well as that of the entire CV population. The SDSS I to IV sample includes 14 period bounce CVs or candidates. We discuss the variability of CVs across the Hertzsprung–Russell diagram, highlighting selection biases of variability-based CV detection. Finally, we searched for, and found eight tertiary companions to the SDSS CVs. We anticipate that this catalogue and the extensive material included in the Supplementary Data will be useful for a range of observational population studies of CVs.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2018

Photometric classification and redshift estimation of LSST Supernovae

Supernova (SN) classification and redshift estimation using photometric data only have become very important for the Large Synoptic Survey Telescope (LSST), given the large number of SNe that LSST will observe and the impossibility of spectroscopically following up all the SNe. We investigate the performance of an SN classifier that uses SN colours to classify LSST SNe with the Random Forest classification algorithm. Our classifier results in an area-under-the-curve of 0.98 which represents excellent classification. We are able to obtain a photometric SN sample containing 99 percent SNe Ia by choosing a probability threshold. We estimate the photometric redshifts (photo-z) of SNe in our sample by fitting the SN light curves using the SALT2 model with nested sampling. We obtain a mean bias ($\langle$z phot - z spec $\rangle$) of 0.012 with σ($\frac{zphot-zspec}{1+zspec}$)=0.0294 σ(zphot-zspec1+zspec)=0.0294 without using a host-galaxy photo-z prior, and a mean bias ($\langle$z phot - z spec $\rangle$) of 0.0017 with σ($\frac{zphot-zspec}{1+zspec}$)=0.0116 using a host-galaxy photo-z prior. Assuming a flat ΛCDM model with Ω m = 0.3, we obtain Ω m of 0.305 ± 0.008 (statistical errors only), using the simulated LSST sample of photometric SNe Ia (with intrinsic scatter σ int = 0.11) derived using our methodology without using host-galaxy photo-z prior. Our method will help boost the power of SNe from the LSST as cosmological probes.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Galaxy morphological classification in deep-wide surveys via unsupervised machine learning

ABSTRACT Galaxy morphology is a fundamental quantity, which is essential not only for the full spectrum of galaxy-evolution studies, but also for a plethora of science in observational cosmology (e.g. as a prior for photometric-redshift measurements and as contextual data for transient light-curve classifications). While a rich literature exists on morphological-classification techniques, the unprecedented data volumes, coupled, in some cases, with the short cadences of forthcoming ‘Big-Data’ surveys (e.g. from the LSST), present novel challenges for this field. Large data volumes make such data sets intractable for visual inspection (even via massively distributed platforms like Galaxy Zoo), while short cadences make it difficult to employ techniques like supervised machine learning, since it may be impractical to repeatedly produce training sets on short time-scales. Unsupervised machine learning, which does not require training sets, is ideally suited to the morphological analysis of new and forthcoming surveys. Here, we employ an algorithm that performs clustering of graph representations, in order to group image patches with similar visual properties and objects constructed from those patches, like galaxies. We implement the algorithm on the Hyper-Suprime-Cam Subaru-Strategic-Program Ultra-Deep survey, to autonomously reduce the galaxy population to a small number (160) of ‘morphological clusters’, populated by galaxies with similar morphologies, which are then benchmarked using visual inspection. The morphological classifications (which we release publicly) exhibit a high level of purity, and reproduce known trends in key galaxy properties as a function of morphological type at z < 1 (e.g. stellar-mass functions, rest-frame colours, and the position of galaxies on the star-formation main sequence). Our study demonstrates the power of unsupervised machine learning in performing accurate morphological analysis, which will become indispensable in this new era of deep-wide surveys.

Martin, G.↗
DOE OSTI2023

CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes

Abstract CRISPR-Cas enzymes enable RNA-guided bacterial immunity and are widely used for biotechnological applications including genome editing. In particular, the Class 2 CRISPR-associated enzymes (Cas9, Cas12 and Cas13 families), have been deployed for numerous research, clinical and agricultural applications. However, the immense genetic and biochemical diversity of these proteins in the public domain poses a barrier for researchers seeking to leverage their activities. We present CasPEDIA (http://caspedia.org), the Cas Protein Effector Database of Information and Assessment, a curated encyclopedia that integrates enzymatic classification for hundreds of different Cas enzymes across 27 phylogenetic groups spanning the Cas9, Cas12 and Cas13 families, as well as evolutionarily related IscB and TnpB proteins. All enzymes in CasPEDIA were annotated with a standard workflow based on their primary nuclease activity, target requirements and guide-RNA design constraints. Our functional classification scheme, CasID, is described alongside current phylogenetic classification, allowing users to search related orthologs by enzymatic function and sequence similarity. CasPEDIA is a comprehensive data portal that summarizes and contextualizes enzymatic properties of widely used Cas enzymes, equipping users with valuable resources to foster biotechnological development. CasPEDIA complements phylogenetic Cas nomenclature and enables researchers to leverage the multi-faceted nucleic-acid targeting rules of diverse Class 2 Cas enzymes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Optimal transport for 𝑒/𝜋 0 particle classification in LArTPC neutrino experiments

The efficient classification of electromagnetic activity from 𝜋 0 and electrons remains an open problem in the reconstruction of neutrino interactions in liquid argon time projection chamber (LArTPC) detectors. We address this problem using the mathematical framework of optimal transport (OT), which has been successfully employed for event classification in other high energy physics contexts and is ideally suited to the high-resolution calorimetry of LArTPCs. Using a publicly available simulated dataset from the MicroBooNE Collaboration, we show that OT methods achieve state-of-the-art reconstruction performance in 𝑒/𝜋 0 classification. The success of this first application indicates the broader promise of OT methods for LArTPC-based neutrino experiments.

Neutrino detection↗
DOE OSTI2022

Classification of (2 + 1) D invertible fermionic topological phases with symmetry

Here we provide a classification of invertible topological phases of interacting fermions with symmetry in two spatial dimensions for general fermionic symmetry groups G f and general values of the chiral central charge c - . Here G f is a central extension of a bosonic symmetry group G b by fermion parity, (-1) F , specified by a second cohomology class [ω 2 ]∈ $\mathscr{H}^2$(Gb,$\mathbb{Z}_2$). Our approach proceeds by gauging fermion parity and classifying the resulting G b symmetry-enriched topological orders while keeping track of certain additional data and constraints. We perform this analysis through two perspectives, using G-crossed braided tensor categories and Spin(2c - ) 1 Chern-Simons theory coupled to a background G gauge field. These results give a way to characterize and classify invertible fermionic topological phases in terms of a concrete set of data and consistency equations, which is more physically transparent and computationally simpler than the more abstract methods using cobordism theory and spectral sequences. Our results also generalize and provide a different approach to the recent classification of fermionic symmetry-protected topological phases by Wang and Gu, which have chiral central charge c - = 0. We show how the tenfold way classification of topological insulators and superconductors fits into our scheme, along with general nonperturbative constraints due to certain choices of c - and G f . Mathematically, our results also suggest an explicit general parametrization of deformation classes of (2 + 1)D invertible topological quantum field theories with G f symmetry.

36 MATERIALS SCIENCE↗
DOE OSTI2024

Toward a classification of PT-symmetric quantum systems: From dissipative dynamics to topology and wormholes

Studies of many-body non-Hermitian parity-time (PT)-symmetric quantum systems are attracting a lot of interest due to their relevance in research areas ranging from quantum optics and continuously monitored dynamics to Euclidean wormholes in quantum gravity and dissipative quantum chaos. While a symmetry classification of non-Hermitian systems leads to 38 universality classes, we show that, under certain conditions, PT-symmetric systems are grouped into 24 universality classes. We identify 14 of them in a coupled two-site Sachdev-Ye-Kitaev (SYK) model and confirm the classification by spectral analysis using exact diagonalization techniques. Intriguingly, in 4 of these 14 universality classes, AIII ν , BDI ν † , BDI + + ν , and CI − − ν , we identify a basis in which the SYK Hamiltonian has a block structure in which some blocks are rectangular, with ν ∈ N the difference between the number of rows and columns. We show analytically that this feature leads to the existence of ν robust purely eigenvalues, whose level statistics follow the predictions of Hermitian random matrix theory for classes A, AI, BDI, and CI, respectively. We have recently found that this ν is a topological invariant, so these classes are topological. By contrast, nontopological real eigenvalues display a crossover between Hermitian and non-Hermitian level statistics. Similarly to the case of Lindbladian dynamics, the reduction of universality classes leads to unexpected results, such as the absence of Kramers degeneracy in a given sector of the theory. Another novel feature of the classification scheme is that different sectors of the PT-symmetric Hamiltonian may have different symmetries. Published by the American Physical Society 2024

Astronomy & Astrophysics↗
DOE OSTI2019

Domain Adaptation for Convolutional Neural Networks Based Remote Sensing Scene Classification

Remote sensing (RS) scene classification plays an important role in the field of earth observation. With the rapid development of the remote sensing techniques, a large number of RS scene images are available. Since manually labeling largescale RS scene images is both labor and time consuming, when a new unlabeled dataset is obtained, how to use the existing labeled datasets to classify the new unlabeled images is an important research direction. Different RS scene image datasets may be taken from different type of sensors, and the images may vary from imaging modalities, spatial resolutions and image scales, so the distribution discrepancy exists among different image datasets. As a result, simply applying Convolutional Neural Networks (CNN) trained on source domain cannot accurately classify the images on target domain. Domain Adaptation (DA) can be helpful to solve this problem. In this paper, we design a Subspace Alignment (SA) and CNN based framework to solve the DA problem in RS scene image classification. A new SA layer is proposed and added into CNN models for DA, which could align the source and target domains in some feature subspace. Finetuning the modified CNN model with the added SA layer is able to make the CNN model adapt to the aligned feature subspace and helps to relieve the domain distribution discrepancy. The experiments conducted on two public datasets show that adding the SA layer into CNN can improve the scene classification on target domain.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

Deep Convolutional Neural Networks for Distribution System Fault Classification

Faults happen very frequently in distribution systems. Identifying fault types and phases are of critical importance for outage management, fault location, and service restoration. However, this task becomes very challenging due to measurement scarcity in distribution systems. This paper is among the first few that applies deep learning techniques in distribution system fault classification. Specifically, a sequential Convolutional Neural Network(CNN)-based classifier is developed to identify fault buses and phases. The input to the CNN is the steady-state voltage and current data measured at substations. The fault identification is modeled as a multi-label classification problem. Training data under various fault scenarios are obtained in OpenDSS and Gaussian noises are added to mimic measurement errors. A case study in IEEE 13-feeder test system is conducted with single and multiple bus faults scenarios. Numerical results demonstrate the high accuracy and fast computation of the proposed deep CNN-based fault classification.

Tian, Guanyu↗
DOE OSTI2022

Outage Cause Classification of Power Distribution Systems with Machine Learning and Real-World Data

Power distribution systems are geographically dispersed by nature. It may be affected by various factors, such as vegetation, weather, animal and human behaviors. Present response procedures to an outage event massively rely on expert experience and thus tend to be time-consuming. Automatic outage event detection and classification will help to reduce the responding and restoration time. However, this issue is less addressed with existing research done in this area. In this applied research, a set of waveform pre-processing techniques are first proposed to prepare the waveform data for being used as inputs to the classification algorithm. Further, a machine learning-based algorithm is proposed to classify the outage events according to their root causes, e.g. tree contact, animal contact, lightning, etc. Available data include three phase current & voltage waveforms and contextual information during the distribution system outages. The proposed machine learning algorithm takes the current and voltage waveforms as direct inputs in search of features that humans are unable to capture. Real data provided by a distribution company in the East Tennessee region is used to test the proposed pre-processing techniques and the classification algorithm.

Sun, Haoyuan↗
DOE OSTI2015

Spectral and Spatial Classification of Hyperspectral Images Based on ICA and Reduced Morphological Attribute Profiles

The availability of hyperspectral images with improved spectral and spatial resolutions provides the opportunity to obtain accurate land-cover classification. In this paper, a novel methodology that combines spectral and spatial information for supervised hyperspectral image classification is proposed. A feature reduction strategy based on independent component analysis is the main core of the spectral analysis, where the exploitation of prior information coupled to the evaluation of the reconstruction error assures the identification of the best class-informative subset of independent components. Reduced attribute profiles (APs), which are designed to address well-known issues related to information redundancy that affect the common morphological APs, are then employed for the modeling and fusion of the contextual information. Four real hyperspectral data sets, which are characterized by different spectral and spatial resolutions with a variety of scene typologies (urban, agriculture areas), have been used for assessing the accuracy and generalization capabilities of the proposed methodology. The obtained results demonstrate the classification effectiveness of the proposed approach in all different scene typologies, with respect to other state-of-the-art techniques.

42 ENGINEERING↗
DOE OSTI2021

Hierarchical Convolutional Neural Networks for Event Classification on PMU Measurements

Event classification is one of the central components of automated disturbance analysis based on PMU measurements. Obtaining high-quality event labels remains a challenge for supervised learning-based classification of local and system-wide events in power grids due to its labor-intensive requirement. We present a sensitivity study considering rapidly refined, partially and fully inspected event labels that leads to evidence that hierarchical convolutional neural networks (HCNNs) outperform traditional classification models regardless of the quality of the available event labels. Furthermore, it is demonstrated that performance similar to the one obtained using entirely domain-driven labeling can be achieved as long as the involved expert does not mislabel more than ~5% of the event data captured by PMU measurements.

47 OTHER INSTRUMENTATION↗
DOE OSTI2023

Exploring Classification of Topological Priors With Machine Learning for Feature Extraction

In many scientific endeavors, increasingly abstract representations of data allow for new interpretive methodologies and conceptualization of phenomena. For example, moving from raw imaged pixels to segmented and reconstructed objects allows researchers new insights and means to direct their studies toward relevant areas. Thus, the development of new and improved methods for segmentation remains an active area of research. With advances in machine learning and neural networks, scientists have been focused on employing deep neural networks such as U-Net to obtain pixel-level segmentations, namely, defining associations between pixels and corresponding/referent objects and gathering those objects afterward. Topological analysis, such as the use of the Morse-Smale complex to encode regions of uniform gradient flow behavior, offers an alternative approach: first, create geometric priors, and then apply machine learning to classify. This approach is empirically motivated since phenomena of interest often appear as subsets of topological priors in many applications. Using topological elements not only reduces the learning space but also introduces the ability to use learnable geometries and connectivity to aid the classification of the segmentation target. Here, in this article, we describe an approach to creating learnable topological elements, explore the application of ML techniques to classification tasks in a number of areas, and demonstrate this approach as a viable alternative to pixel-level classification, with similar accuracy, improved execution time, and requiring marginal training data.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2016

SU-G-BRC-13: Model Based Classification for Optimal Position Selection for Left-Sided Breast Radiotherapy: Free Breathing, DIBH, Or Prone

Purpose: There are clinical decision challenges to select optimal treatment positions for left-sided breast cancer patients—supine free breathing (FB), supine Deep Inspiration Breath Hold (DIBH) and prone free breathing (prone). Physicians often make the decision based on experiences and trials, which might not always result optimal OAR doses. We herein propose a mathematical model to predict the lowest OAR doses among these three positions, providing a quantitative tool for corresponding clinical decision. Methods: Patients were scanned in FB, DIBH, and prone positions under an IRB approved protocol. Tangential beam plans were generated for each position, and OAR doses were calculated. The position with least OAR doses is defined as the optimal position. The following features were extracted from each scan to build the model: heart, ipsilateral lung, breast volume, in-field heart, ipsilateral lung volume, distance between heart and target, laterality of heart, and dose to heart and ipsilateral lung. Principal Components Analysis (PCA) was applied to remove the co-linearity of the input data and also to lower the data dimensionality. Feature selection, another method to reduce dimensionality, was applied as a comparison. Support Vector Machine (SVM) was then used for classification. Thirtyseven patient data were acquired; up to now, five patient plans were available. K-fold cross validation was used to validate the accuracy of the classifier model with small training size. Results: The classification results and K-fold cross validation demonstrated the model is capable of predicting the optimal position for patients. The accuracy of K-fold cross validations has reached 80%. Compared to PCA, feature selection allows causal features of dose to be determined. This provides more clinical insights. Conclusion: The proposed classification system appeared to be feasible. We are generating plans for the rest of the 37 patient images, and more statistically significant results are to be presented.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2016

MO-DE-207A-02: A Feature-Preserving Image Reconstruction Method for Improved Pancreaticlesion Classification in Diagnostic CT Imaging

Purpose: To develop a feature-preserving model based image reconstruction (MBIR) method that improves performance in pancreatic lesion classification at equal or reduced radiation dose. Methods: A set of pancreatic lesion models was created with both benign and premalignant lesion types. These two classes of lesions are distinguished by their fine internal structures; their delineation is therefore crucial to the task of pancreatic lesion classification. To reduce image noise while preserving the features of the lesions, we developed a MBIR method with curvature-based regularization. The novel regularization encourages formation of smooth surfaces that model both the exterior shape and the internal features of pancreatic lesions. Given that the curvature depends on the unknown image, image reconstruction or denoising becomes a non-convex optimization problem; to address this issue an iterative-reweighting scheme was used to calculate and update the curvature using the image from the previous iteration. Evaluation was carried out with insertion of the lesion models into the pancreas of a patient CT image. Results: Visual inspection was used to compare conventional TV regularization with our curvature-based regularization. Several penalty-strengths were considered for TV regularization, all of which resulted in erasing portions of the septation (thin partition) in a premalignant lesion. At matched noise variance (50% noise reduction in the patient stomach region), the connectivity of the septation was well preserved using the proposed curvature-based method. Conclusion: The curvature-based regularization is able to reduce image noise while simultaneously preserving the lesion features. This method could potentially improve task performance for pancreatic lesion classification at equal or reduced radiation dose. The result is of high significance for longitudinal surveillance studies of patients with pancreatic cysts, which may develop into pancreatic cancer. The Senior Author receives financial support from Siemens GmbH Healthcare.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2022

Three-Dimensional Convective–Stratiform Echo-Type Classification and Convectivity Retrieval from Radar Reflectivity

The Echo Classification from COnvectivity (ECCO) algorithm identifies convective and stratiform types of radar echo in three dimensions. It is based on the calculation of reflectivity texture—a combination of the intensity and the heterogeneity of the radar echoes on each horizontal plane in a 3D Cartesian volume. Reflectivity texture is translated into convectivity, which is designed to be a quantitative measure of the convective nature of each 3D radar grid point. It ranges from 0 (100% stratiform) to 1 (100% convective). By thresholding convectivity, a more traditional qualitative categorization is obtained, which classifies radar echoes as convective, mixed, or stratiform. In contrast to previous algorithms, these echo-type classifications are provided on the full 3D grid of the reflectivity field. The vertically resolved classifications, in combination with temperature data, allow for subclassifications into shallow, mid-, deep, and elevated convective features, and low, mid-, and high stratiform regions—again in three dimensions. The algorithm was validated using datasets collected over the U.S. Great Plains during the PECAN field campaign. An analysis of lightning counts shows ~90% of lightning occurring in regions classified as convective by ECCO. A statistical comparison of ECCO echo types with the well-established GPM radar precipitation-type categories show 84% (88%) of GPM stratiform (convective) echo being classified as stratiform (convective) or mixed by ECCO. ECCO was applied to radar grids for the continental United States, the United Arab Emirates, Australia, and Europe, illustrating its robustness and adaptability to different radar grid characteristics and climatic regions.

Radars/Radar observations↗