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At least 379 records · Page 21

Viral Communities of Shark Bay Modern Stromatolites

Single stranded DNA viruses have been previously shown to populate the oceans on a global scale, and are endemic in microbialites of both marine and freshwater systems. We undertook for the first time direct viral metagenomic shotgun sequencing to explore the diversity of viruses in the modern stromatolites of Shark Bay Australia. The data indicate that Shark Bay marine stromatolites have similar diversity of ssDNA viruses to that of Highbourne Cay, Bahamas. ssDNA viruses in cluster uniquely in Shark Bay and Highbourne Cay, potentially due to enrichment by phi29-mediated amplification bias. Further, pyrosequencing data was assembled from the Shark Bay systems into two putative viral genomes that are related to Genomoviridae family of ssDNA viruses. In addition, the cellular fraction was shown to be enriched for antiviral defense genes including CRISPR-Cas, BREX (bacteriophage exclusion), and DISARM (defense island system associated with restriction-modification), a potentially novel finding for these systems. This is the first evidence for viruses in the Shark Bay stromatolites, and these viruses may play key roles in modulating microbial diversity as well as potentially impacting ecosystem function through infection and the recycling of key nutrients.

59 BASIC BIOLOGICAL SCIENCES↗

Data-Centric Communication Framework for Multicast IEC 61850 Routable GOOSE Messages over the WAN in Modern Power Systems

In this paper, a data-centric communication framework is proposed for multicast routable generic object-oriented substation event (GOOSE) messages (MRGM) over the wide area network (WAN) for effective substation-to-substation (SS2SS) and substation to control center (SS2CC) communications. In this structure, the IEC 61850 GOOSE message is transmitted over the WAN using the data distribution service (DDS) as a fast, reliable, and secure data-centric communication middleware. The main feature of this framework is its multicast capability, where several authorized subscribers can receive a published message simultaneously. This can significantly improve the system monitoring and control of the protection systems in modern smart grids, where intelligent schemes can be applied. The effectiveness of the proposed platform, in terms of total end-to-end delay between participants, is evaluated through experimental results obtained from the actual hardware-based test setup developed at the Florida International University (FIU) smart grid testbed. The results demonstrate that the latency between sending and receiving a GOOSE message among participants is within its maximum time span defined by the IEC 61850-90-5 working group for communications over the WAN.

42 ENGINEERING↗

Time Synchronization Techniques in the Modern Smart Grid: A Comprehensive Survey

In modern smart grids, accurate and synchronized time signals are essential for effective monitoring, protection, and control. Various time synchronization methods exist, each tailored to specific application needs. Widely adopted solutions, such as GPS, however, are vulnerable to challenges such as signal loss and cyber-attacks, underscoring the need for reliable backup or supplementary solutions. This paper examines the timing requirements across different power grid applications and provides a comprehensive review of available time synchronization mechanisms. Through a comparative analysis of timing methods based on accuracy, flexibility, reliability, and security, this study offers insights to guide the selection of optimal solutions for seamless grid integration.

comparison↗

Combining On-Line Characterization Tools with Modern Software Environments for Optimal Operation of Polymerization Processes

Here, this paper discusses the initial steps towards the formulation and implementation of a generic and flexible model centric framework for integrated simulation, estimation, optimization and feedback control of polymerization processes. For the first time it combines the powerful capabilities of the automatic continuous on-line monitoring of polymerization system (ACOMP), with a modern simulation, estimation and optimization software environment towards an integrated scheme for the optimal operation of polymeric processes. An initial validation of the framework was performed for modelling and optimization using literature data, illustrating the flexibility of the method to apply under different systems and conditions. Subsequently, off-line capabilities of the system were fully tested experimentally for model validations, parameter estimation and process optimization using ACOMP data. Experimental results are provided for free radical solution polymerization of methyl methacrylate.

42 ENGINEERING↗

A Model-Based Systems Engineering Approach for Effective Decision Support of Modern Energy Systems Depicted with Clean Hydrogen Production

A holistic approach to decision-making in modern energy systems is vital due to their increase in complexity and interconnectedness. However, decision makers often rely on narrowly-focused strategies, such as economic assessments, for energy system strategy selection. The approach in this paper helps considers various factors such as economic viability, technological feasibility, environmental impact, and social acceptance. By integrating these diverse elements, decision makers can identify more economically feasible, sustainable, and resilient energy strategies. While existing focused approaches are valuable since they provide clear metrics of a potential solution (e.g., an economic measure of profitability), they do not offer the much needed system-as-a-whole understanding. This lack of understanding often leads to selecting suboptimal or unfeasible solutions, which is often discovered much later in the process when a change may not be possible. This paper presents a novel evaluation framework to support holistic decision-making in energy systems. The framework is based on a systems thinking approach, applied through systems engineering principles and model-based systems engineering tools, coupled with a multicriteria decision analysis approach. The systems engineering approach guides the development of feasible solutions for novel energy systems, and the multicriteria decision analysis is used for a systematic evaluation of available strategies and objective selection of the best solution. The proposed framework enables holistic, multidisciplinary, and objective evaluations of solutions and strategies for energy systems, clearly demonstrates the pros and cons of available options, and supports knowledge collection and retention to be used for a different scenario or context. The framework is demonstrated in case study evaluation solutions for a novel energy system of clean hydrogen generation.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Criticality Analysis of a Water Distribution System Considering Both Economic Consequences and Hydraulic Loss Using Modern Portfolio Theory

This study introduces an approach using Modern Portfolio Theory (MPT) to consider hydraulic resilience and economic consequence resilience of a water distribution system (WDS) to identify critical assets. ECLIPS (Economic Consequence Linked to Interruption in Providing Service), a way to represent loss of water provision as economic loss, is used to measure economic consequence following a reduction of WDS functionality. The approach is demonstrated using a hypothetical WDS and tested for pipe breakage and replacement scenarios using EPANET hydraulic simulations. First, the correlation between hydraulic resilience and economic consequence resilience was investigated to assess differences between two resilience measures for identifying pipe’s criticality for replacement. The results confirmed the two resilience measures exhibited differing responses (covariance = 0.2), suggesting that use of both would provide complementary insight. Results of the MPT analysis identified the benefits of balancing hydraulic and economic consequence resilience measures to yield lower risk. This study provides a practical approach to incorporate economic consequence into planning, design, and research applications identifying critical WDS assets.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Capturing the Impact of Fuel Octane Number on Modern Gasoline Vehicles with Octane Indices

The need for high efficiency automotive engines has led to more complex air handling and fuel injection systems, higher compression ratios, more advanced combustion and aftertreatment systems, and the use of fuels with higher octane ratings. Higher octane number fuels have a lower propensity to knock. This work studies the influence of changing fuel octane rating on two modern production gasoline vehicles, one with a naturally aspirated, port injected engine and the other with a turbocharged, direct injected engine, using fuels with four different octane number grades (with 85, 87, 91, and 93 anti-knock indices) and operated over a variety of driving cycles and temperature conditions. Unlike previous studies, this effort develops and demonstrates a methodology that isolates fuel effects on fuel consumption and provides a clear view of the octane impact on existing vehicles. While fuel octane rating can also impact factors such as the allowable compression ratio and gear shifting strategies, this study examines fuel consumption changes that are solely attributable to octane rating on production vehicles. The developed approach uses results from drive cycle as well as steady-state tests along with response surface modeling to predict the engine combustion phasing and changes in efficiency for each fuel relative to the baseline 87 anti-knock index (AKI) fuel. The methodology is then used to capture the role of fuel octane rating on powertrain efficiency over Environmental Protection Agency (EPA) certification drive cycles and demonstrate the variation of that impact as a function of powertrain output power. Based on the vehicles and fuels tested in this study, the metrics indicate that the effects of octane on efficiency are limited to a portion of the operating modes represented in the driving cycles used for vehicle certification. In addition, an octane potential benefit index (OPBI) suggests that the vehicle with the turbocharged, direct injected engine has a greater potential to benefit from higher octane number fuel compared to the naturally aspirated, port injected engine and proposes a way to quantify this impact for production vehicles.

Jehlik, Forrest↗

Investigation of the Impact of Fuel Properties on Particulate Number Emission of a Modern Gasoline Direct Injection Engine

Gasoline Direct Injection (GDI) has become the preferred technology for spark-ignition engines resulting in greater specific power output and lower fuel consumption, and consequently reduction in CO2 emission. However, GDI engines face a substantial challenge in meeting new and future emission limits, especially the stringent particle number (PN) emissions recently introduced in Europe and China. Studies have shown that the fuel used by a vehicle has a significant impact on engine out emissions. In this study, nine fuels with varying chemical composition and physical properties were tested on a modern turbo-charged side-mounted GDI engine with design changes to reduce particulate emissions. The fuels tested included four fuels meeting US certification requirements; two fuels meeting European certification requirements; and one fuel meeting China 6 certification requirements being proposed at the time of this work. Two risk safeguard fuels (RSG), representing the properties of worst case market fuels in Europe and China, were also included. The particle number concentration of the solid particulates was measured in the engine-out exhaust flow at steady state engine operations with load and speed sweeps, and semi-transient load steps. The test results showed a factor of 6 PN emission difference among all certification fuels tested. Combined with detailed fuel analyses, this study evaluated important factors (such as oxygenates, carbon chain length and thermo-physical properties) that cause PN emissions which were not included in PMI index. A linear regression was performed to develop a PN predictive model which showed improved fitting quality than using PMI.

33 ADVANCED PROPULSION SYSTEMS↗

PaleoSTeHM v1.0: a modern, scalable spatiotemporal hierarchical modeling framework for paleo-environmental data

Abstract. Geological records of past environmental change provide crucial insights into long-term climate variability, trends, non-stationarity, and nonlinear feedback mechanisms. However, reconstructing spatiotemporal fields from these records is statistically challenging due to their sparse, indirect, and noisy nature. Here, we present PaleoSTeHM, a scalable and modern framework for spatiotemporal hierarchical modeling of paleo-environmental data. This framework enables the implementation of flexible statistical models that rigorously quantify spatial and temporal variability from geological data while clearly distinguishing measurement and inferential uncertainty from process variability. We illustrate its application by reconstructing temporal and spatiotemporal paleo-sea-level changes across multiple locations. Using various modeling and analysis choices, PaleoSTeHM demonstrates the impact of different methods on inference results and computational efficiency. Our results highlight the critical role of model selection in addressing specific paleo-environmental questions, showcasing the PaleoSTeHM framework's potential to enhance the robustness and transparency of paleo-environmental reconstructions.

58 GEOSCIENCES↗

Resolving glacial isostatic adjustment (GIA) in response to modern and future ice loss at marine grounding lines in West Antarctica

Accurate glacial isostatic adjustment (GIA) modelling in the cryosphere is required for interpreting satellite, geophysical and geological records and for assessing the feedbacks of Earth deformation and sea-level change on marine ice-sheet grounding lines. GIA modelling in areas of active ice loss in West Antarctica is particularly challenging because the ice is underlain by laterally varying mantle viscosities that are up to several orders of magnitude lower than the global average, leading to a faster and more localised response of the solid Earth to ongoing and future ice-sheet retreat and necessitating GIA models that incorporate 3-D viscoelastic Earth structure. Improvements to GIA models allow for computation of the viscoelastic response of the Earth to surface ice loading at sub-kilometre resolution, and ice-sheet models and observational products now provide the inputs to GIA models at comparably unprecedented detail. However, the resolution required to accurately capture GIA in models remains poorly understood, and high-resolution calculations come at heavy computational expense. We adopt a 3-D GIA model with a range of Earth structure models based on recent seismic tomography and geodetic data to perform a comprehensive analysis of the influence of grid resolution on predictions of GIA in the Amundsen Sea Embayment (ASE) in West Antarctica. Through idealised sensitivity testing down to sub-kilometre resolution with spatially isolated ice loading changes, we find that a grid resolution of ~$\frac{1}{3}$ of the radius of the load or higher is required to accurately capture the elastic response of the Earth. However, when we consider more realistic, spatially coherent ice loss scenarios based on modern observational records and future ice-sheet model projections and adopt a viscoelastic Earth, we find that predicted deformation and sea-level change along the grounding line converge to within 5 % with grid resolutions of 7.5 km or higher, and to within 2% for grid resolutions of 3.75 km and higher, even when the input ice model is on a 1 km grid. Furthermore, we show that low mantle viscosities beneath the ASE lead to viscous deformation that contributes to the instrumental record on decadal timescales and equals or dominates over elastic effects by the end of the 21st century. Our findings suggest that for the range of resolutions of 1.9–15 km that we considered, the error due to adopting a coarser grid in this region is negligible compared to the effect of neglecting viscous effects and the uncertainty in the adopted mantle viscosity structure.

54 ENVIRONMENTAL SCIENCES↗

The Modern Research Data Portal: A Design Pattern for Networked, Data-Intensive Science

Here we describe best practices for providing convenient, high-speed, secure access to large data via research data portals. We capture these best practices in a new design pattern, the Modern Research Data Portal, that disaggregates the traditional monolithic web-based data portal to achieve orders-of-magnitude increases in data transfer performance, support new deployment architectures that decouple control logic from data storage, and reduce development and operations costs. We introduce the design pattern; explain how it leverages high-performance Science DMZs and cloud-based data management services; review representative examples at research laboratories and universities, including both experimental facilities and supercomputer sites; describe how to leverage Python APIs for authentication, authorization, data transfer, and data sharing; and use coding examples to demonstrate how these APIs can be used to implement a range of research data portal capabilities. Sample code at a companion web site, https://docs.globus.org/mrdp, provides application skeletons that readers can adapt to realize their own research data portals.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

The Modern Research Data Portal: a design pattern for networked, data-intensive science

We describe best practices for providing convenient, high-speed, secure access to large data via research data portals. Here, we capture these best practices in a new design pattern, the Modern Research Data Portal, that disaggregates the traditional monolithic web-based data portal to achieve orders-of-magnitude increases in data transfer performance, support new deployment architectures that decouple control logic from data storage, and reduce development and operations costs. We introduce the design pattern; explain how it leverages high-performance data enclaves and cloud-based data management services; review representative examples at research laboratories and universities, including both experimental facilities and supercomputer sites; describe how to leverage Python APIs for authentication, authorization, data transfer, and data sharing; and use coding examples to demonstrate how these APIs can be used to implement a range of research data portal capabilities. Sample code at a companion web site, https://docs.globus.org/mrdp , provides application skeletons that readers can adapt to realize their own research data portals.

97 MATHEMATICS AND COMPUTING↗