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NASA NTRS2021

PURE mRNA display and cDNA display provide rapid detection of core epitope motif via high‐throughput sequencing

The reconstructed in vitro translation system known as the PURE system has been used in a variety of cell‐free experiments such as the expression of native and de novo proteins as well as various display methods to select for functional polypeptides. We developed a refined PURE‐based display method for the preparation of stable messenger RNA (mRNA) and complementary DNA (cDNA)‐peptide conjugates and validated its utility for in vitro selection. Our conjugate formation efficiency exceeded 40%, followed by gel purification to allow minimum carry‐over of components from the translation system to the downstream assay enabling clean and efficient random peptide sequence screening. We chose the commercially available anti‐FLAG M2 antibody as a target molecule for validation. Starting from approximately 1.7 × 10(exp 12) random sequences, a round‐by‐round high‐throughput sequencing showed clear enrichment of the FLAG epitope DYKDDD as well as revealing consensus FLAG epitope motif DYK(D/L/N)(L/Y/D/N/F)D. Enrichment of core FLAG motifs lacking one of the four key residues (DYKxxD) indicates that Tyr(Y) and Lys (K) appear as the two key residues essential for binding. Furthermore, the comparison between mRNA display and cDNA display method resulted in overall similar performance with slightly higher enrichment for mRNA display. We also show that gel purification steps in the refined PURE‐based display method improve conjugate formation efficiency and enhance the enrichment rate of FLAG epitope motifs in later rounds of selection especially for mRNA display. Overall, the generalized procedure and consistent performance of two different display methods achieved by the commercially available PURE system will be useful for future studies to explore the sequence and functional space of diverse polypeptides.

cDNA display, FLAG epitope, mRNA display, peptide ↗
NASA NTRS2021

Variety in the Variability of Accreting Supermassive Binary Black Holes

Accreting supermassive binary black holes are key multi-messenger sources for LISA, yet are challenging to simulate realistically as solving the radiation magnetohydrodynamics (MHD) equations over the full dynamic spatio-temporal range of the problem is computationally infeasible at present. We will provide a brief summary of the the progress made in the field to understand these systems theoretically and what new directions groups are pursuing. We will also report on our collaboration's progress to simulate these systems using general relativistic MHD and dynamic GR. In order to cover a larger temporal range in one set of simulations, we constrain our view to the circumbinary disk region and measure how the binary mass ratio, accretion disk size, and black hole spin have on the structure and variability of the accretion flow. We particularly emphasize how these parameters influence the overdensity feature, which orbits the binary near the edge of the cavity, since it is responsible for most of the electromagnetic emission's variability and variability is a key signature of a system being a binary. Extending to smaller length scales, we will report on simulations following accretion all the down to the event horizons so that we can begin to investigate how black hole spin affects mini-disk dynamics, accretion rate, and jet power. The novel computational methods enabling inclusion of the black holes in the domain, including multi-patch methods, will be described.

Scott C Noble↗
NASA NTRS2019

The Zwicky Transient Facility: Science Objectives

The Zwicky Transient Facility (ZTF), a public–private enterprise, is a new time-domain survey employing a dedicated camera on the Palomar 48-inch Schmidt telescope with a 47 sq. deg field of view and an 8 second readout time. It is well positioned in the development of time-domain astronomy, offering operations at 10% of the scale and style of the Large Synoptic Survey Telescope (LSST) with a single 1-m class survey telescope. The public surveys will cover the observable northern sky every three nights in g and r filters and the visible Galactic plane every night in g and r. Alerts generated by these surveys are sent in real time to brokers. A consortium of universities that provided funding (“partnership”) are undertaking several boutique surveys. The combination of these surveys producing one million alerts per night allows for exploration of transient and variable astrophysical phenomena brighter than r ~20.5 on timescales of minutes to years. We describe the primary science objectives driving ZTF, including the physics of supernovae and relativistic explosions, multi-messenger astrophysics, supernova cosmology, active galactic nuclei, and tidal disruption events, stellar variability, and solar system objects.

Matthew J. Graham↗
NASA NTRSDate not supplied

Prospects for Cross-Correlations of UHECR Events with Astrophysical Sources with Upcoming Space-Based Experiments

Ultra-high energy cosmic rays (UHECRs) are the messengers of the most extreme physics in the cosmos; however, efforts to identify their origins have thus far been thwarted by the fact that they don’t point back to their sources. Using statistical studies cross-correlating UHECR arrival directions with astrophysical catalogs, the ground-based Pierre Auger Observatory has reported hints of a correlation with nearby starburst galaxies, as well as lower-significance correlations with other classes of astrophysical sources. Space-based UHECR experiments, such as POEMMA and ZAP, will monitor large interaction volumes on the Earth or the Moon. Within a few years of mission operation time, both missions will achieve unprecedented exposures at energies above40EeV across the entire sky. In this contribution, we present studies of the cross-correlation between UHECR event arrival directions and astrophysical catalogs as motivated by expectations for the detector performance for POEMMA and ZAP. We find that both POEMMA and ZAP will achieve 5σ discovery reach for many plausible astrophysical scenarios.

Tonia M Venters↗
NASA NTRSDate not supplied

Constraints on the Origin of Mercury’s Large Core from Core-Mantle Differentiation Models

Mercury’s core is notoriously large when compared to other planets of our solar system. The origin of this large core is still uncertain. Available data on the surface composition and internal structure of Mercury from the past MESSENGER mission and future data collected by BepiColombo will continue to provide clues to Mercury’s formation. Here, we present results combining experimental data on elemental distribution between core and mantle with spacecraft data, to estimate bulk Mercury composition. We applied this strategy to major elements (Fe, Si, Mg, Al and O), as well as minor elements (Cr and Ti), and compared derived compositions to chondritic data and the chemical compositions of the other terrestrial planets. Our results show that Mercury has a chemical composition significantly different from all known materials of the solar system. In addition, numerous scenarios were proposed to explain Mercury’s structure, including “chaotic models” such as giant impacts and “orderly models” such as aerodynamic sorting. Here, we tested whether Mercury’s composition can be explained by mantle stripping by impacts. We will show how such a scenario reconciles several features of Mercury’s geochemistry with chondritic data. We will also discuss the outlook of additional constraints from supplementary data potentially collected by BepiColombo.

Mercury↗
NASA NTRSDate not supplied

New Constraints on the Volatile Deposit in Mercury’s North Polar Crater, Prokofiev

There is strong evidence from multi-wavelength, multi-instrument observations and thermal models for the presence of ice and other volatiles in Mercury’s north polar permanently shadowed regions (PSRs)[1-6]. Ground-based radar measurements identified bright regions in some polar craters interpreted to be water ice on or near the surface[1]. The MESSENGER spacecraft found that some radar-bright deposits appeared bright in the optical and near-infrared while others appeared dark[4-6]. The bright regions were interpreted to be exposed surface ice while the dark regions were hypothesized to be complex organic volatile lag deposits overlaying buried ice[3]. One example of the former is in the 112 km diameter crater, Prokofiev, for which the Mercury Dual Imaging System (MDIS) acquired broadband images while in Sun shadow but illuminated by scattered light from the crater walls[5]. These images revealed a relatively high-albedo region spatially correlated with the PSR. Subsequent work[7] found a small offset between the boundary of the radar-bright region and that of the PSR predicted by an illumination model based on the polar digital elevation model (DEM)from the Mercury Laser Altimeter (MLA). Such an offset, if true, could have implications for the ice properties and its delivery and destruction mechanisms. However, the low resolution (1 km/pix) of the polar MLA DEM precluded a definitive conclusion. In the present work, we build new higher-resolution topographic, illumination, and thermal models of Prokofiev to place stronger constraints on its PSR and volatile deposits. We also study the MLA reflectance data in this crater to quantitatively estimate the ice abundance.

Michael K Barker↗
NASA NTRS2021

The Heraklion Extragalactic Catalogue (HECATE): A Value-added Galaxy Catalogue for Multimessenger Astrophysics

We present the Heraklion Extragalactic Catalogue, or HECATE, an all-sky value-added galaxy catalogue, aiming to facilitate present and future multiwavelength and multi messenger studies in the local Universe. It contains 204 733 galaxies up to a red shift of 0.047 (D200 Mpc), and it is>50 per cent complete in terms of the B-band luminosity density at distances in the0–170 Mpc range. By incorporating and homogenizing data from astronomical data bases and multiwavelength surveys, the catalogue offers positions, sizes, distances, morphological classifications, star formation rates, stellar masses, metallicities, and nuclear activity classifications. This wealth of information can enable a wide range of applications, such as (i) demographic studies of extragalactic sources, (ii) initial characterization of transient events, and (iii) searches for electromagnetic counterparts of gravitational-wave events. The catalogue is publicly available to the community at a dedicated portal, which will also host future extensions in terms of the covered volume and data products.

K Kovlakas↗
NASA NTRSDate not supplied

Mercury Crustal and Lithospheric Properties from High-resolution Gravity Field Models

We have analyzed all the available tracking data from the MErcury Surface, Space ENvironment, GEochemistry, and Ranging (MESSENGER) mission to determine high-resolution gravity field models. We have applied a technique based on line-of-sight accelerations that results in models with improved correlations with topography in areas where the spacecraft altitude was low. We have used these models in an analysis of admittance to determine properties of the crust and lithosphere. We focus on four areas where correlations between gravity and topography are high. These locations represent different areas on Mercury: the high-Mg region, the Strindberg crater plus some lobate scarps, heavily cratered terrain, and smooth plains (the northern rise). We find crustal densities around 2600 kg m-3 for the first three areas, and a higher density for the northern rise, indicative of volcanic materials. Elastic thickness is generally low and varies between 11 and 30 km.

Sander Johannes Goossens↗
NASA NTRS2021

INTEGRAL reloaded: Spacecraft, instruments and ground system

The European Space Agency’s INTErnational Gamma-Ray Astrophysics Laboratory (ESA/INTEGRAL) was launched aboard a Proton-DM2 rocket on 17 October 2002 at 06:41 CEST, from Baikonur in Kazakhstan. Since then, INTEGRAL has been providing long, uninterrupted observations (up to about 47 h, or 170 ksec, per satellite orbit of 2.7 days) with a large field-of-view (FOV, fully coded: 100 deg), millisecond time resolution, keV energy resolution, polarization measurements, as well as additional wavelength coverage at optical wavelengths. This is realized by two main instruments in the 15 keV to 10 MeV energy range, the spectrometer SPI (spectral resolution 3 keV at 1.8 MeV) and the imager IBIS (angular resolution: 12 arcmin FWHM), complemented by X-ray (JEM-X; 3–35 keV) and optical (OMC; Johnson V-band) monitor instruments. All instruments are co-aligned to simultaneously observe the target region. A particle radiation monitor (IREM) measures charged particle fluxes near the spacecraft. The Anti-coincidence subsystems of the main instruments, built to reduce the background, are also very efficient all-sky γ-ray detectors, which provide virtually omni-directional monitoring above ~75 keV. Besides the long, scheduled observations, INTEGRAL can rapidly (within a couple of hours) re-point and conduct Target of Opportunity (ToO) observations on a large variety of sources. INTEGRAL observations and their scientific results have been building an impressive legacy: The discovery of currently more than 600 new high-energy sources; the first-ever direct detection of (56)Ni and (56)Co radio-active decay lines from a Type Ia supernova; spectroscopy of isotopes from galactic nucleo-synthesis sources; new insights on enigmatic positron annihilation in the Galactic bulge and disk; and pioneering gamma-ray polarization studies. INTEGRAL is also a successful actor in the new multi-messenger astronomy introduced by non-electromagnetic signals from gravitational waves and from neutrinos: INTEGRAL found the first prompt electromagnetic radiation in coincidence with a binary neutron star merger. Up to now more than 1750 scientific papers based on INTEGRAL data have been published in refereed journals. In this paper, we will give a comprehensive update of the satellite status after more than 18 years of operations in a harsh space environment, and an account of the successful Ground Segment.

Erik Kuulkers↗
NASA NTRS2020

Investigating Mercury’s environment with the Two-Spacecraft BepiColombo Mission

The ESA-JAXA BepiColombo mission will provide simultaneous measurements from two spacecraft, offering an unprecedented opportunity to investigate magnetosphericand exospheric dynamics at Mercury as well as their interactions with the solar wind, radiation, and interplanetary dust. Many scientific instruments onboard the two spacecraft will be completely, or partially devoted to study the near-space environment of Mercury as well as the complex processes that govern it. Many issues remain unsolved even after the MESSENGER mission that ended in 2015. The specific orbits of the two spacecraft, MPO and Mio, and the comprehensive scientific payload allow a wider range of scientific questions to be addressed than those that could be achieved by the individual instruments acting alone, or by previous missions. These joint observations are of key importance because many phenomena in Mercury’s environment are highly temporally and spatially variable. Examples of possible coordinated observations are described in this article, analysing the required geometrical conditions, pointing, resolutions and operation timing of different BepiColombo instruments sensors.

A Milillo↗
NASA NTRSDate not supplied

Improving the transient sensitivity of AMEGO-X using single-site events

AMEGO-X is a proposed Compton/pair telescope which will image and survey the medium-energy gamma-ray sky between 100 keV and 1 GeV. It is designed to detect and characterize gamma-ray emission from multi-messenger sources. On short time scales (<100s), including information from single-site events (photoelectric effect interactions)significantly increases AMEGO-X's sensitivity and lowers its energy threshold down to 25 keV. In this presentation, we will present AMEGO-X's sensitivity to transient events such as gamma-ray bursts and magnetar giant flares, and discuss the improvements due to the inclusion of single-site events. We will also discuss AMEGO-X's ability to localize transient sources and alert the community for follow-up observations.

Henrike Fleischhack↗
NASA NTRSDate not supplied

Improving the Transient Sensitivity of AMEGO-X Using Single-site Events

AMEGO-X is a Compton/pair gamma-ray telescope, submitted to NASA's 2021 MIDEX AO, which will image and survey the medium-energy gamma-ray sky between 100 keV and 1 GeV. It is designed to detect and characterize gamma-ray emission from multi-messenger sources. On short time scales (<100s), including information from single-site events (photoelectric effect interactions) significantly increases AMEGO-X's sensitivity and lowers its energy threshold down to 25 keV. In this presentation, we will present AMEGO-X's sensitivity to transient events such as gamma-ray bursts and magnetar giant flares, and discuss the improvements due to the inclusion of single-site events. We will also discuss AMEGO-X's ability to localize transient sources and alert the community for follow-up observations.

Henrike Fleischhack↗
NASA NTRS2022

Exploring the MeV Sky With A Combined Coded Mask and Compton Telescope: the Galactic Explorer With A Coded Aperture Mask Compton Telescope (GECCO)

The sky at MeV energies is currently poorly explored. Here we present an innovative mission concept that builds upon the heritage of past and current missions improving the sensitivity and, very importantly, the angular resolution. This consists in combining a Compton telescope and a coded-mask telescope. We delineate the motivation for such a concept and we define the scientific goals for such a mission. The Galactic Explorer with a Coded Aperture Mask Compton Telescope (GECCO) is a novel concept for a next-generation telescope covering hard X-ray and soft gamma-ray energies. The potential and importance of this approach that bridges the observational gap in the MeV energy range are presented. With the unprecedented angular resolution of the coded mask telescope combined with the sensitive Compton telescope, a mission such as GECCO can disentangle the discrete sources from the truly diffuse emission. Individual Galactic and extragalactic sources are detected. This also allows to understand the gamma-ray Galactic center excess and the Fermi Bubbles, and to trace the low-energy cosmic rays, and their propagation in the Galaxy. Nuclear and annihilation lines are spatially and spectrally resolved from the continuum emission and from sources, addressing the role of low-energy cosmic rays in star formation and galaxy evolution, the origin of the 511 keV positron line, fundamental physics, and the chemical enrichment in the Galaxy. Such an instrument also detects explosive transient gamma-ray sources, which, in turn, enables identifying and studying the astrophysical objects that produce gravitational waves and neutrinos in a multi-messenger context. By looking at a poorly explored energy band it also allows discoveries of new astrophysical phenomena.

Elena Orlando↗
NASA NTRS2022

In Search of Short Gamma-ray Burst Optical Counterparts with the Zwicky Transient Facility

The Fermi Gamma-ray Burst Monitor (GBM) triggers on-board in response to∼40 short gamma-ray bursts (SGRBs) per year; however, their large localization regions have made the search for optical counterparts a challenging endeavour. We have developed and executed an extensive program with the wide field of view of the Zwicky Transient Facility (ZTF) camera, mounted on the Palomar 48 inch Oschin telescope (P48), to perform target-of-opportunity (ToO) observations on 10Fermi-GBM SGRBsduring 2018 and 2020-2021. Bridging the large sky areas with small field of view optical telescopesin order to track the evolution of potential candidates, we look for the elusive SGRB afterglows andkilonovae (KNe) associated with these high-energy events. No counterpart has yet been found, eventhough more than 10 ground based telescopes, part of the Global Relay of Observatories WatchingTransients Happen (GROWTH) network, have taken part in these efforts. The candidate selectionprocedure and the follow-up strategy have shown that ZTF is an efficient instrument for searchingfor poorly localized SGRBs, retrieving a reasonable number of candidates to follow-up and showingpromising capabilities as the community approaches the multi-messenger era. Based on the medianlimiting magnitude of ZTF, our searches would have been able to retrieve a GW170817-like event upto∼200 Mpc and SGRB afterglows to z = 0.16 or 0.4, depending on the assumed underlying energymodel. Future ToOs will expand the horizon to z = 0.2 and 0.7 respectively.

Tomas Ahumada↗
NASA NTRS2022

Electromagnetic Time and Wavelength Domain Predictions for Accreting Binary Black Holes

Accreting massive binary black holes in gaseous environments are keymulti-messenger sources for the LISA mission. We will present some ofthe latest predictions of the observational signatures of accreting binary black holes across the electromagnetic spectrum from the fieldand provide some of our own. In particular, we will provide a briefsummary of the progress made in our group to understand these systemstheoretically using high-performance simulations of generalrelativistic magnetohydrodynamics (MHD) and dynamic spacetimes.Simulating these systems realistically is challenging asradiation-coupled MHD must be considered over large dynamic ranges inspace and time. Constraining our view to the circumbinary disk regionfirst, we will show how the evolution duration, accretion disk size,mass ratio, and thermodynamics model affect the structure andvariability of the accretion flow. We particularly emphasize how theseparameters influence the over-density feature, or "lump", which orbitsthe binary near the edge of the cavity, since it is responsible formost of the electromagnetic emission's variability---a key signatureof a system being a binary. Extending to smaller length scales, wewill report on simulations following accretion all the down to theevent horizons so that we may begin to investigate how black hole spinaffects mini-disk dynamics, accretion rate, and jet power. We willalso report on our radiative transfer predictions for how black holespin alters the spectral energy distribution of these systems.Wrapping up, we will itemize the remaining key theoreticaltechnologies and directions needed to be accomplished to betterunderstand these sources, and assess strategies for searching for themin the coming decade.

Scott C Noble↗
NASA NTRSDate not supplied

STAR-X: Survey and Time-domain Astrophysical Research eXplorer

STAR-X is a MIDEX mission proposed to NASA in December 2021. Comprising an X-ray telescope (XRT) provided by GSFC and MIT, a UV telescope (UVT) provided by the University of Colorado, and a spacecraft (SC) provided by Ball Aerospace, STAR-X is designed to conduct time-domain survey and to respond rapidly to transient events discovered by other observatories such as LIGO, Rubin LSST, Roman WFIRST, and SKA. The key features of the XRT are its excellent PSF (2.5 arc-seconds half-power diameter), large effective area (1,800 cm2 at 1 keV), and large field of view (1 deg2), making it more than an order of magnitude more capable and more sensitive than Chandra and Swift/XRT to conduct survey and to find and study transient sources. The UVT has a 30-cm aperture with 5 filters covering the 160nm to 340nm band, providing simultaneous spectral coverage with the XRT and enabling reverberation mapping of accretion disk geometries around black holes. The SC is highly autonomous and is capable of fast slewing, enabling efficient raster scans and time-domain surveys. In particular, in combination with a state-of-the-art mission operations center at the University of Colorado, the SC can respond to targets of opportunity within 2 hours 90% of the time. With its nearly equatorial low-earth orbit, STAR-X’s telescopes will have low particle background, enabling them to have unprecedented sensitivity for measuring faint diffuse emissions from clusters of galaxies. STAR-X is a timely response to Astro2020’s recommendation for a space-based, sustaining time-domain and multi-messenger program.

William W. Zhang↗
NASA NTRS2022

Quantifying Energy Release in Solar Flares and Solar Eruptive Events

Solar flares and the often associated solar eruptive events serve as an outstanding laboratory to study the magnetic reconnection and the associated energy release and conversion processes under plasma conditions difficult to reproduce in the laboratory, and with considerable spatiotemporal details not possible elsewhere in the universe. In the past decade, thanks to advances in multiwavelength imaging spectroscopy, as well as developments in theories and numerical modeling, significant progress has been made in improving our understanding of solar flare/eruption energy release. In particular, broadband imaging spectroscopy at microwave wavelengths offered by the Expanded Owens Valley Solar Array (EOVSA) has enabled the revolutionary capability of measuring the time-evolving coronal magnetic fields at or near the flare reconnection region. However, owing to EOVSA’s limited dynamic range, imaging fidelity, and angular resolution, such measurements can only be done in a region around the brightest source(s) where the signal-to-noise is sufficiently large. In this white paper, after a brief introduction to the outstanding questions and challenges pertinent to magnetic energy release in solar flares and eruptions, we will demonstrate how a next-generation radio facility with many (∼100–200) antenna elements can bring the next revolution by enabling high dynamic range, high fidelity broadband imaging spectropolarimetry along with a sub-second time resolution and arcsecond level angular resolution. We recommend to prioritize the implementation of such a ground-based instrument within this decade. We also call for facilitating multi-wavelength, multi-messenger observations and advanced numerical modeling in order to achieve a comprehensive understanding of the “system science” of solar flares and eruptions.

Bin Chen↗
NASA NTRS2023

Temperature Effect on Silicate Melt-Sulfide-Metal Trace Element Partitioning in the Presence of Sulfur Under Reduced Conditions

The reduced nature of Mercury, enstatite chondrites, and the aubrite parent bodies (APB) have raised many questions regarding the geochemical behavior of typically lithophile, heat-producing, and rare-earth elements (REE) in magmas at low oxygen fugacity (fO2). Due to decreasing O availability at these low fO2, and an abundance of S(sup 2(-)), sulfur (S) acts as an important anion that changes the partitioning behavior of many elements and modifies the physical properties of silicate melts. Preliminary observations suggest that major and minor elements exhibit different geochemical affinities in highly reduced, S-rich systems compared to terrestrial rocks. The speciation and bonding environment of S, dictated by P/T/fO2 conditions, may strongly influence the degree to which S affects partitioning behavior. Here we investigate the partitioning behavior of major, minor, and trace elements between silicate melt, sulfide melt, and metal as well as the coordination chemistry of S in highly reduced silicate melts. Our work is focused on investigating solely the entropy-dependent temperature effect on partitioning of elements for which we currently have MESSENGER data (K, Na, Th, U, Si, Mg, Fe, Ti, Ca, Al, Cr, Mn, S, Cl) as well as a host of geochemically relevant trace elements such as REEs (P, Co, Ni, Mo, Ce, Nd, Sm, Eu, Gd, Dy, Yb). Previous studies in which temperature, pressure, and fO2 were co-varied found that as fO2 decreases, heat-producing elements U and Th become more chalcophile, while K becomes less chalcophile. Concurrently, nominally lithophile elements Mg and Ca become more chalcophile and were observed as minor elements in exsolved sulfides and bonded with S species in silicate melt. These studies, however, could not disentangle entropic effects from changes in the fO2. New temperature-dependent partitioning data from our work will be used to determine which elements are most likely to retain their lithophile character and hence be incorporated into silicates, and which elements are likely contained within the sulfide (chalcophile) and metal core (siderophile), setting the stage for the thermal and magmatic evolution of reduced planetary bodies.

B A Anzures↗