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At least 379 records · Page 21

Method for nanoscale spatial registration of scanning probes with substrates and surfaces

Embodiments in accordance with the present invention relate to methods and apparatuses for aligning a scanning probe used to pattern a substrate, by comparing the position of the probe to a reference location or spot on the substrate. A first light beam is focused on a surface of the substrate as a spatial reference point. A second light beam then illuminates the scanning probe being used for patterning. An optical microscope images both the focused light beam, and a diffraction pattern, shadow, or light backscattered by the illuminated scanning probe tip of a scanning probe microscope (SPM), which is typically the tip of the scanning probe on an atomic force microscope (AFM). Alignment of the scanning probe tip relative to the mark is then determined by visual observation of the microscope image. This alignment process may be repeated to allow for modification or changing of the scanning probe microscope tip.

Wade, Lawrence A.↗

Sub-pixel localization of highways in AVIRIS images

Roads and highways show up clearly in many bands of AVIRIS images. A typical lane in the U.S. is 12 feet wide, and the total width of a four lane highway, including 18 feet of paved shoulders, is 19.8 m. Such a highway will cover only a portion of any 20x20 m AVIRIS pixel that it traverses. The other portion of these pixels wil be usually covered by vegetation. An interesting problem is to precisely determine the location of a highway within the AVIRIS pixels that it traverses. This information may be used for alignment and spatial calibration of AVIRIS images. Also, since the reflection properties of highway surfaces do not change with time, and they can be determined once and for all, such information can be of help in calculating and filtering out the atmospheric noise that contaminates AVIRIS measurements. The purpose of this report is to describe a method for sub-pixel localization of highways.

Salu, Yehuda↗

Observation and analysis of emergent coherent structures in a high-energy-density shock-driven planar mixing layer experiment

Coherent emergent structures have been observed in a high-energy-density supersonic mixing layer experiment. A millimeter-scale shock tube uses lasers to drive Mbar shocks into the tube volume. The shocks are driven into initially solid foam (60 mg/cm 3 ) hemicylinders separated by an Al or Ti metal tracer strip; the components are vaporized by the drive. Before the experiment disassembles, the shocks cross at the tube center, creating a very fast (ΔU > 200 km/s) shear-unstable zone. After several nanoseconds, an expanding mixing layer is measured, and after 10+ ns we observe the appearance of streamwise-periodic, spanwise-aligned rollers associated with the primary Kelvin-Helmholtz instability of mixing layers. We additionally image roller pairing and spanwise-periodic streamwise-aligned filaments associated with secondary instabilities. New closures are derived to connect length scales of these structures to estimates of fluctuating velocity data otherwise unobtainable in the high-energy-density environment. Finally, this analysis indicates shear-induced specific turbulent energies 10 3 – 10 4 times higher than the nearest conventional experiments. Because of difficulties in continuously driving systems under these conditions and the harshness of the experimental environment limiting the usable diagnostics, clear evidence of these developing structures has never before been observed in this regime.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

SU-E-T-48: Automated Quality Assurance for XML Controlled Linacs

Purpose: To automate routine imaging QA procedures so that complying with TG 142 and TG 179 can be efficient and reliable. Methods: Two QA tests for a True Beam Linac were automatized. A Winston Lutz test as described by Lutz et al{sup 1} using the Winston Lutz test kit from BrainLab, Germany and a CBCT Image Quality test as described in TG 179 using the EMMA phantom, Siemens Medical Physics, Germany were performed in our True Beam. For each QA procedure tested, a 3 step paradigm was used. First, the data was automatically acquired using True Beam Developer Mode and XML scripting. Second, the data acquired in the first step was automatically processed using in-home grown Matlab GUIs. Third, Machine Learning algorithms were used to automatically classify the processed data and reports generated. Results: The Winston Luzt test could be performed by an experienced medical physicist in 29.0 ± 8.0 min. The same test, if automated using our paradigm, could be performed in 3.0 ± 0.1 min. In the same lieu, time could be substantially saved for image quality tests. In this case, the amount of time saved will depend on the phantoms used and the initial localization method. Additionally, machine learning algorithms could automatically identify the roots of the problems if any and possibly help reduce machine down time. Conclusion: Modern linear accelerators are equipped with advanced 2D and 3D imaging that are used for patient alignment substantially improving IGRT protocols. However, this extra complexity exponentially increases the number of QA tests needed. Using the new paradigm described above, not only bare minimum but best practice QA programs could be implemented with the same manpower. This work is supported by Varian, Palo Alto, CA.

60 APPLIED LIFE SCIENCES↗

Scanning transmission election microscopy observations of twisted epitaxial gold nanodiscs in twisted molybdenum disulfide bilayers

Atomic scale, scanning transmission electron microscopy (STEM) analysis of the moiré structures in twisted epitaxial gold nanodiscs encapsulated in twisted bilayer molybdenum disulfide is presented. High angle annular dark field STEM imaging reveals that the period of the moiré patterns between gold and molybdenum disulfide varies with different twist angles of the bilayer molybdenum disulfide, ranging from 1.80 nm (epitaxial alignment of gold) to 1.53 nm (twisted epitaxial alignment of gold). Additionally, bright field STEM imaging reveals a faint, larger "moiré of moiré" structure in cases where the bilayer molybdenum disulfide twist angle is small (~6°), arising from the overlapping three-layers, which is not visible in conventional transmission electron microscopy images. In conclusion, our experiments indicate that scanning transmission electron microscopy as a suitable tool for moiré analysis of twisted multilayer planar heterostructures, complementary to information provided by conventional transmission electron microscopy and diffraction.

Au↗

Regiospecific Cellulose Orientation and Anisotropic Mechanical Property in Plant Cell Walls

Cellulose microfibrils (CMFs) are a major load-bearing component in plant cell walls. Thus, their structures have been studied extensively with spectroscopic and microscopic characterization methods; but the findings from these two approaches were inconsistent, which hampers mechanistic understanding of cell wall mechanics. Here, we report the regiospecific assembly of CMFs in the periclinal wall of plant epidermal cells. Using sum frequency generation spectroscopic imaging, we found that CMFs are highly aligned in the cell edge region where two cells form a junction, whereas they are mostly isotropic on average throughout the wall thickness in the flat face region of the epidermal cell. This subcellular-level heterogeneity in CMF alignment provided insights into tissue-level anisotropy in tensile modulus of cell wall materials. Furthermore, this finding also has resolved a previous contradiction between the spectroscopic and microscopic imaging studies, which paves a foundation for better understanding of cell wall artichecture, especially structure-geometry relationships.

59 BASIC BIOLOGICAL SCIENCES↗

Near-infrared continuum and 3.3 micrometer(s) polycyclic aromatic hydrocarbon imaging of the starburst ring in the type 1 Seyfert galaxy NGC 7469

High resolution near-infrared images of the type 1 Seyfert galaxy NGC 7469 have been obtained to probe its dusty nuclear environment. Direct J, H, and K images are relatively featureless, but residual images created by subtracting a smooth model based on best-fitting elliptical isophotes reveal a tight inner spiral whose high surface-brightness portions correspond to a previously detected 3 sec (1 kpc) diameter ring of radio continuum emission. The inner infrared spiral arms extended approximately equal to 4 sec NW and SE from the nucleus, and the NW arm joins up with large-scale spiral structure visible in the R band. The residual images also show a bar-like structure aligned with the brightest infrared/radio hotspots at PA approximately equal to 50 deg. Three infrared hotspots are detected which align remarkably well with 6 cm radio continuum sources. The near-infrared ring and the hotspots are visible in the residual images, and in a high-resolution direct K-band image restored to an effective resolution of 0.65 sec (FWHM) using the Richardson-Lucy algorithm. The infrared hotspots have luminosities of nuL(sub nu) (2.2 micrometer(s)) approximately equal to 10(exp 8) solar luminosity (M(sub k) approximately equal to -16 mag), suggesting they are either giant H II regions or individual supernovae. The two brightest regions may be associated with enhanced star formation triggered by orbit crowding of gas where spiral arms emerge from an inner bar. Narrowband (delta lambda/lambda approximately 1.5%) imaging in the 3.28 micrometer(s) dust emission feature and surrounding continuum confirms the 3 sec diameter 3.28 micrometer(s) emission region detected previously using multiaperture photometry. The extended polycyclic aromatic hydrocarbon (PAH) emission is slightly elongated and aligned with published 1O III1 line emission and 12.5 micrometer(s) continuum emission, apparently tracing the starburst. The presence of approximately equal to 25% of the total 3.28 micrometer(s) PAH emission within R less than 1 sec demonstrates that a starburst within the central few hundred parsecs must supply a significant fraction of the infrared continuum from the nucleus, and there is apparently sufficient shielding material between the starburst and the active galactic nucleus (AGN) to preserve the PAHs along our line of sight to the nucleus.

Mazzarella, J. M.↗

Sci—Fri AM: Mountain — 06: Optimizing planning target volume in lung radiotherapy using deformable registration

A four dimensional computed tomography (4DCT) image is acquired for all radically treated, lung cancer patients to define the internal target volume (ITV), which encompasses tumour motion due to breathing and subclinical disease. Patient set-up error and anatomical motion that is not due to breathing is addressed through an additional 1 cm margin around the ITV to obtain the planning target volume (PTV). The objective of this retrospective study is to find the minimum PTV margin that provides an acceptable probability of delivering the prescribed dose to the ITV. Acquisition of a kV cone beam computed tomography (CBCT) image at each fraction was used to shift the treatment couch to accurately align the spinal cord and carina. Our method utilized deformable image registration to automatically position the planning ITV on each CBCT. We evaluated the percentage of the ITV surface that fell within various PTVs for 79 fractions across 18 patients. Treatment success was defined as a situation where at least 99% of the ITV is covered by the PTV. Overall, this is to be achieved in at least 90% of the treatment fractions. The current approach with a 1cm PTV margin was successful ∼96% of the time. This analysis revealed that the current margin can be reduced to 0.8cm isotropic or 0.6×0.6×1 cm{sup 3} non-isotropic, which were successful 92 and 91 percent of the time respectively. Moreover, we have shown that these margins maintain accuracy, despite intrafractional variation, and maximize CBCT image guidance capabilities.

60 APPLIED LIFE SCIENCES↗

WE-H-BRC-03: Failure Mode and Effects Analysis in the First Clinical Implementation of a Novel Stereotactic Breast Radiotherapy Device: GammaPod™

Purpose: GammaPod™, the first stereotactic radiotherapy device for early stage breast cancer treatment, has been recently installed and commissioned at our institution. A multidisciplinary working group applied the failure mode and effects analysis (FMEA) approach to perform a risk analysis. Methods: FMEA was applied to the GammaPod™ treatment process by: 1) generating process maps for each stage of treatment; 2) identifying potential failure modes and outlining their causes and effects; 3) scoring the potential failure modes using the risk priority number (RPN) system based on the product of severity, frequency of occurrence, and detectability (ranging 1–10). An RPN of higher than 150 was set as the threshold for minimal concern of risk. For these high-risk failure modes, potential quality assurance procedures and risk control techniques have been proposed. A new set of severity, occurrence, and detectability values were re-assessed in presence of the suggested mitigation strategies. Results: In the single-day image-and-treat workflow, 19, 22, and 27 sub-processes were identified for the stages of simulation, treatment planning, and delivery processes, respectively. During the simulation stage, 38 potential failure modes were found and scored, in terms of RPN, in the range of 9-392. 34 potential failure modes were analyzed in treatment planning with a score range of 16-200. For the treatment delivery stage, 47 potential failure modes were found with an RPN score range of 16-392. The most critical failure modes consisted of breast-cup pressure loss and incorrect target localization due to patient upper-body alignment inaccuracies. The final RPN score of these failure modes based on recommended actions were assessed to be below 150. Conclusion: FMEA risk analysis technique was applied to the treatment process of GammaPod™, a new stereotactic radiotherapy technology. Application of systematic risk analysis methods is projected to lead to improved quality of GammaPod™ treatments. Ying Niu and Cedric Yu are affiliated with Xcision Medical Systems.

60 APPLIED LIFE SCIENCES↗

Aligning the transmitter and receiver telescopes of an infrared lidar A novel method

A method for aligning the transmitter and receiver telescopes of a lidar is proposed which involves the use of a small high-quality corner tube reflector placed immediately in front of the transmitter in such a way that a small fraction of the transmitted radiation is reflected to the receiver. The reflected radiation is brought to a focus in a focal plane where it appears as a small red dot and is superimposed on the image of the distant scene. The dot and the target appear in the same plane and may be brought to coincidence by moving the transmitter-receiver pair together until the image of the target falls on the red dot. The alignment is concluded by imaging the red dot onto an IR detector.

Oppenheim, U. P.↗

Accurate measurement of relative tilt and azimuth angles in electron tomography: A comparison of fiducial marker method with electron diffraction

Electron tomography is a method whereby a three-dimensional reconstruction of a nanoscale object is obtained from a series of projected images measured in a transmission electron microscope. We developed an electron-diffraction method to measure the tilt and azimuth angles, with Kikuchi lines used to align a series of diffraction patterns obtained with each image of the tilt series. Since it is based on electron diffraction, the method is not affected by sample drift and is not sensitive to sample thickness, whereas tilt angle measurement and alignment using fiducial-marker methods are affected by both sample drift and thickness. The accuracy of the diffraction method benefits reconstructions with a large number of voxels, where both high spatial resolution and a large field of view are desired. The diffraction method allows both the tilt and azimuth angle to be measured, while fiducial marker methods typically treat the tilt and azimuth angle as an unknown parameter. The diffraction method can be also used to estimate the accuracy of the fiducial marker method, and the sample-stage accuracy. A nano-dot fiducial marker measurement differs from a diffraction measurement by no more than ±1°.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

The soft X-ray telescope for the SOLAR-A mission

The Soft X-ray Telescope (SXT) of the SOLAR-A mission is designed to produce X-ray movies of flares with excellent angular and time resolution as well as full-disk X-ray images for general studies. A selection of thin metal filters provide a measure of temperature discrimination and aid in obtaining the wide dynamic range required for solar observing. The co-aligned SXT aspect telescope will yield optical images for aspect reference, white-light flare and sunspot studies, and, possibly, helioseismology. This paper describes the capabilities and characteristics of the SXT for scientific observing.

Tsuneta, S.↗

Spatially Resolved Spectra of 3C Galaxy Nuclei

We present and discuss visible-wavelength long-slit spectra of four low-redshift 3C galaxies obtained with the Space Telescope Imaging Spectrograph on the Hubble Space Telescope (HST). The slit was aligned with near-nuclear jet-like structure seen in HST images of the galaxies, to give unprecedented spatial resolution of their inner regions. In 3C 135 and 3C 171, the spectra reveal clumpy emission-line structures that indicate outward motions of a few hundred kilometers per second within a centrally illuminated and ionized biconical region. There may also be some low-ionization, high-velocity material associated with 3C 135. In 3C 264 and 3C 78, the jets have blue featureless spectra consistent with their proposed synchrotron origin. There is weak associated line emission in the innermost part of the jets with mild outflow velocity. These jets are bright and highly collimated only within a circumnuclear region of lower galaxy luminosity, which is not dusty. We discuss the origins of these central regions and their connection with relativistic jets.

Hutchings, J. B.↗

SU-E-J-22: A Feasibility Study On KV-Based Whole Breast Radiation Patient Setup

Purpose: In room kilovoltage x-ray (kV) imaging provides higher contrast than Megavoltage (MV) imaging with faster acquisition time compared with on-board cone-beam computed tomography (CBCT), thus improving patient setup accuracy and efficiency. In this study we evaluated the clinical feasibility of utilizing kV imaging for whole breast radiation patient setup. Methods: For six breast cancer patients with whole breast treatment plans using two opposed tangential fields, MV-based patient setup was conducted by aligning patient markers with in room lasers and MV portal images. Beam-eye viewed kV images were acquired using Varian OBI system after the set up process. In house software was developed to transfer MLC blocks information overlaying onto kV images to demonstrate the field shape for verification. KV-based patient digital shift was derived by performing rigid registration between kV image and the digitally reconstructed radiography (DRR) to align the bony structure. This digital shift between kV-based and MV-based setup was defined as setup deviation. Results: Six sets of kV images were acquired for breast patients. The mean setup deviation was 2.3mm, 2.2mm and 1.8mm for anterior-posterior, superior-inferior and left-right direction respectively. The average setup deviation magnitude was 4.3±1.7mm for six patients. Patient with large breast had a larger setup deviation (4.4–6.2mm). There was no strong correlation between MV-based shift and setup deviation. Conclusion: A preliminary clinical workflow for kV-based whole breast radiation setup was established and tested. We observed setup deviation of the magnitude below than 5mm. With the benefit of providing higher contrast and MLC block overlaid on the images for treatment field verification, it is feasible to use kV imaging for breast patient setup.

60 APPLIED LIFE SCIENCES↗

Photometric redshifts and intrinsic alignments: Degeneracies and biases in the 3 × 2 pt analysis

We present a systematic study of cosmological parameter bias in weak lensing and large-scale structure analyses for upcoming imaging surveys induced by the interplay of intrinsic alignments (IA) and photometric redshift (photo-z) model misspecification error. We first examine the degeneracies between the parameters of the tidal alignment–tidal torquing (TATT) model for IA and of a photo-z model including a mean shift ( Δ z ¯ ) and variance ( σ z ) for each tomographic bin of lenses and sources, under a variety of underlying true IA behaviors. We identify strong degeneracies between: (1) the redshift scaling of the tidal alignment amplitude and the mean shift and variances of source bins, (2) the redshift scaling of the tidal torquing amplitude and the variance of the lowest- z source bin, and (3) the IA source density weighting and the mean shift and variance of several source bins. We then use this information to guide our exploration of the level of cosmological parameter bias which can be induced given incorrect modeling of IA, photo-z, or both. We find that marginalizing over all the parameters of TATT is generally sufficient to preclude cosmological parameter bias in the scenarios we consider. However, this does not necessarily mean that IA and photo-z parameters are themselves unbiased, nor does it mean that the best-fit model is a good fit to the data. We also find scenarios where the inferred parameters produce χ d . o . f . 2 values indicative of a good fit but cosmological parameter bias is significant, particularly when the IA source density weighting parameter is not marginalized over. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Aperture‐Synthesis Radar Imaging With Compressive Sensing for Ionospheric Research

Abstract Inverse methods involving compressive sensing are tested in the application of two‐dimensional aperture‐synthesis imaging of radar backscatter from field‐aligned plasma density irregularities in the ionosphere. We consider basis pursuit denoising, implemented with the fast iterative shrinkage thresholding algorithm, and orthogonal matching pursuit (OMP) with a wavelet basis in the evaluation. These methods are compared with two more conventional optimization methods rooted in entropy maximization (MaxENT) and adaptive beamforming (linearly constrained minimum variance or often “Capon's Method.”) Synthetic data corresponding to an extended ionospheric radar target are considered. We find that MaxENT outperforms the other methods in terms of its ability to recover imagery of an extended target with broad dynamic range. Fast iterative shrinkage thresholding algorithm performs reasonably well but does not reproduce the full dynamic range of the target. It is also the most computationally expensive of the methods tested. OMP is very fast computationally but prone to a high degree of clutter in this application. We also point out that the formulation of MaxENT used here is very similar to OMP in some respects, the difference being that the former reconstructs the logarithm of the image rather than the image itself from basis vectors extracted from the observation matrix. MaxENT could in that regard be considered a form of compressive sensing.

Hysell, D. L.↗

Optical Design and Performance of the Ultra-Compact Imaging Spectrometer

We present the optical design and performance of the Ultra-Compact Imaging Spectrometer (UCIS) currently under development at Caltech's Jet Propulsion Laboratory. The new instrument demonstrates a low optical bench mass of less than 0.5 kg and compact size that enables Mars Rover or other in situ planetary applications. UCIS is a F/4, wide field (30deg) design, covering the spectral range 500-2600 nm and is enabled by a simple all aluminum two-mirror telescope and Offner spectrometer. We discuss here the optical design and alignment method that enables this compact and low mass imaging spectrometer and demonstrate successful spectrometer alignment with smile and keystone levels at 2-3% of a pixel width.

Imaging spectroscopy↗

Hartman Testing of X-Ray Telescopes

Hartmann testing of x-ray telescopes is a simple test method to retrieve and analyze alignment errors and low-order circumferential errors of x-ray telescopes and their components. A narrow slit is scanned along the circumference of the telescope in front of the mirror and the centroids of the images are calculated. From the centroid data, alignment errors, radius variation errors, and cone-angle variation errors can be calculated. Mean cone angle, mean radial height (average radius), and the focal length of the telescope can also be estimated if the centroid data is measured at multiple focal plane locations. In this paper we present the basic equations that are used in the analysis process. These equations can be applied to full circumference or segmented x-ray telescopes. We use the Optical Surface Analysis Code (OSAC) to model a segmented x-ray telescope and show that the derived equations and accompanying analysis retrieves the alignment errors and low order circumferential errors accurately.

Saha, Timo T.↗