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DOE OSTI2018

Depth matters: effects of precipitation regime on soil microbial activity upon rewetting of a plant-soil system

Changes in frequency and amplitude of rain events, that is, precipitation patterns, result in different water conditions with soil depth, and likely affect plant growth and shape plant and soil microbial activity. Here, we used 18 O stable isotope probing (SIP) to investigate bacterial and fungal communities that actively grew or not upon rewetting, at three different depths in soil mesocosms previously subjected to frequent or infrequent watering for 12 weeks (equal total water input). Phylogenetic marker genes for bacteria and fungi were sequenced after rewetting, and plant-soil microbial coupling documented by plant 13 C-CO 2 labeling. Soil depth, rather than precipitation pattern, was most influential in shaping microbial response to rewetting, and had differential effects on active and inactive bacterial and fungal communities. After rewetting, active bacterial communities were less rich, more even and phylogenetically related than the inactive, and reactivated throughout the soil profile. Active fungal communities after rewetting were less abundant and rich than the inactive. The coupling between plants and soil microbes decreased under infrequent watering in the top soil layer. In conclusion, we suggest that differences in fungal and bacterial abundance and relative activity could result in large effects on subsequent soil biogeochemical cycling.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Depth-dependent valence stratification driven by oxygen redox in lithium-rich layered oxide

Abstract Lithium-rich nickel-manganese-cobalt (LirNMC) layered material is a promising cathode for lithium-ion batteries thanks to its large energy density enabled by coexisting cation and anion redox activities. It however suffers from a voltage decay upon cycling, urging for an in-depth understanding of the particle-level structure and chemical complexity. In this work, we investigate the Li 1.2 Ni 0.13 Mn 0.54 Co 0.13 O 2 particles morphologically, compositionally, and chemically in three-dimensions. While the composition is generally uniform throughout the particle, the charging induces a strong depth dependency in transition metal valence. Such a valence stratification phenomenon is attributed to the nature of oxygen redox which is very likely mostly associated with Mn. The depth-dependent chemistry could be modulated by the particles’ core-multi-shell morphology, suggesting a structural-chemical interplay. These findings highlight the possibility of introducing a chemical gradient to address the oxygen-loss-induced voltage fade in LirNMC layered materials.

25 ENERGY STORAGE↗

DOE OSTI2022

Super-hydration and reduction of manganese oxide minerals at shallow terrestrial depths

Manganese oxides are ubiquitous marine minerals which are redox sensitive. As major components of manganese nodules found on the ocean floor, birnessite and buserite have been known to be two distinct water-containing minerals with manganese octahedral interlayer separations of ~7 Å and ~10 Å, respectively. We show here that buserite is a super-hydrated birnessite formed near 5 km depth conditions. As one of the most hydrous minerals containing ca. 34.5 wt. % water, super-hydrated birnessite, i.e., buserite, remains stable up to ca. 70 km depth conditions, where it transforms into manganite by releasing ca. 24.3 wt. % water. Subsequent transformations to hausmannite and pyrochroite occur near 100 km and 120 km depths, respectively, concomitant with a progressive reduction of Mn 4+ to Mn 2+ . Our work forwards an abiotic geochemical cycle of manganese minerals in subduction and/or other aqueous terrestrial environments, with implications for water storage and cycling, and the redox capacity of the region.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Depth-dependent Metagenome-Assembled Genomes of Agricultural Soils under Managed Aquifer Recharge

Abstract Managed Aquifer Recharge (MAR) systems, which intentionally replenish groundwater aquifers with excess water, are critical for addressing water scarcity exacerbated by demographic shifts and climate variability. To date, little is known about the functional diversity of the soil microbiome at different soil depth inhabiting agricultural soils used for MAR. Knowing the functional diversity is pivotal in regulating nutrient cycling and maintaining soil health. Metagenomics, particularly Metagenome-Assembled Genomes (MAGs), provide a powerful tool to explore the diversity of uncultivated soil microbes, facilitating in-depth investigations into microbial functions. In a field experiment conducted in a California vineyard, we sequenced soil DNA before and after water application of MAR. Through this process, we assembled 146 medium and 14 high-quality MAGs, uncovering a wide array of archaeal and bacterial taxa across different soil depths. These findings advance our understanding of the microbial ecology and functional diversity of soils used for MAR, contributing to the development of more informed and sustainable land management strategies.

Science & Technology - Other Topics↗

DOE OSTI2026

Depth-resolved carbon dioxide and methane concentrations in 522 lakes, ponds, and reservoirs worldwide

Lakes, ponds, and reservoirs (hereafter: “lakes”) are important sources of the greenhouse gases carbon dioxide (CO 2 ) and methane (CH 4 ). Emissions of CO 2 and CH 4 from lakes are regulated in part by in-lake processes, including the production and storage of gases in the lower parts of the water column (bottom waters). However, while substantial efforts have been made to improve estimates of greenhouse gas emissions from lakes, limited data on gas concentrations along depth profiles have prevented the incorporation of bottom-water processes in global emission estimates. Here, we present GHG-depths: the largest existing dataset of depth-profile CO 2 and CH 4 measurements worldwide, including 522 lakes across 38 countries and all seven continents. These data include contributions from 45 research teams and 56 published studies, totaling 2558 discrete sampling events. As global change continues to alter biogeochemical cycling in lakes, these data can help improve mechanistic models to better predict greenhouse gas production and emission from lakes worldwide.

Rabaey, Joseph S. [University of Minnesota, Duluth↗

DOE OSTI2023

Interpreting inorganic compositional depth profiles to understand the rate-limiting step in vapor phase infiltration processes

Vapor phase infiltration (VPI) is a post-polymerization modification technique that infuses inorganics into polymers to create organic–inorganic hybrid materials with new properties. Much is yet to be understood about the chemical kinetics underlying the VPI process. The aim of this study is to create a greater understanding of the process kinetics that govern the infiltration of trimethyl aluminum (TMA) and TiCl 4 into PMMA to form inorganic-PMMA hybrid materials. To gain insight, this paper initially examines the predicted results for the spatiotemporal concentrations of inorganics computed from a recently posited reaction–diffusion model for VPI. This model provides insight on how the Damköhler number (reaction versus diffusion rates) and non-Fickian diffusional processes (hindering) that result from the material transforming from a polymer to a hybrid can affect the evolution of inorganic concentration depth profiles with time. Subsequently, experimental XPS depth profiles are collected for TMA and TiCl 4 infiltrated PMMA films at 90 °C and 135 °C. The functional behavior of these depth profiles at varying infiltration times are qualitatively compared to various computed predictions and conclusions are drawn about the mechanisms of each of these processes. TMA infiltration into PMMA appears to transition from a diffusion-limited process at low temperatures (90 °C) to a reaction-limited process at high temperatures (135 °C) for the film thicknesses investigated here (200 nm). While TMA appears to fully infiltrate these 200 nm PMMA films within a few hours, TiCl 4 infiltration into PMMA is considerably slower, with full saturation not occurring even after 2 days of precursor exposure. Infiltration at 90 °C is so slow that no clear conclusions about mechanism can be drawn; however, at 135 °C, the TiCl 4 infiltration into PMMA is clearly a reaction-limited process, with TiCl 4 permeating the entire thickness (at low concentrations) within only a few minutes, but inorganic loading continuously increasing in a uniform manner over a course of 2 days. Near-surface deviations from the uniform-loading expected for a reaction-limited process also suggest that diffusional hindering is high for TiCl 4 infiltration into PMMA. In conclusion, these results demonstrate a new, ex situ analysis approach for investigating the rate-limiting process mechanisms for vapor phase infiltration.

36 MATERIALS SCIENCE↗

DOE OSTI2022

The eROSITA Final Equatorial-Depth Survey (eFEDS)

The eROSITA Final Equatorial Depth Survey (eFEDS), completed in survey mode during the calibration and performance verification phase of the eROSITA instrument on Spectrum Roentgen Gamma, delivers data at and beyond the final depth of the 4-yr eROSITA all-sky survey (eRASS:8), f 0.5–2 keV = 1.1 × 10 –14 erg s –1 cm –2 , over 140 deg 2 . It provides the first view of normal galaxy X-ray emission from X-ray binaries (XRBs) and the hot interstellar medium at the full depth of eRASS:8. We used the Heraklion Extragalactic Catalogue (HECATE) of galaxies to correlate with eFEDS X-ray sources and identify X-ray detected normal galaxies. This flux-limited X-ray survey is relatively free from selection effects and enables the study of integrated normal galaxy X-ray emission and its relation to galaxy parameters such as the stellar mass, star formation rate (SFR), and metallicity. We cross-correlated 32 646 eFEDS X-ray sources to 1181 HECATE normal galaxies and obtained 94 matches. We classified galaxies as star-forming, early-type, composite, and active galactic nuclei (AGN) using Sloan Digital Sky Survey (SDSS) and Six-degree Field (6dF) optical spectroscopy. The eFEDS field harbours 37 normal galaxies: 36 late-type (star-forming) galaxies and one early-type galaxy. There are 1.9 times as many normal galaxies as predicted by scaling relations via simulations, with an overabundance of late-type galaxies and a dearth of early-type galaxies. When compared with empirical relations, eFEDS dwarf galaxies with a high specific SFR have elevated L X /SFR at a fixed specific SFR and metallicity, indicating an increase in XRB emission due to low metallicity. We expect that eRASS:8 will detect 12 500 normal galaxies, the majority of which will be star-forming, with the caveat that there are unclassified sources in eFEDS and galaxy catalogue incompleteness issues that could increase the actual number of detected galaxies over these current estimates. eFEDS observations detected a rare population of galaxies – the metal-poor dwarf starbursts – that do not follow known scaling relations. eRASS is expected to discover significant numbers of these high-redshift analogues, which are important for studying the heating of the intergalactic medium at high redshift. Further investigation of the hot gas emission from normal galaxies and stochastic effects in the dwarf galaxy population are required to constrain their X-ray output.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2014

Nondestructive estimation of depth of surface opening cracks in concrete beams

Concrete is one of the most widely used construction materials and thus assessment of damage in concrete structures is of the utmost importance from both a safety point of view and a financial point of view. Of particular interest are surface opening cracks that extend through the concrete cover, as this can expose the steel reinforcement bars underneath and induce corrosion in them. This corrosion can lead to significant subsequent damage in concrete such as cracking and delamination of the cover concrete as well as rust staining on the surface of concrete. Concrete beams are designed and constructed in such a way to provide crack depths up to around 13 cm. Two different types of measurements are made in-situ to estimate depths of real surface cracks (as opposed to saw-cut notches) after unloading: one based on the impact-echo method and the other one based on the diffuse ultrasonic method. These measurements are compared to the crack depth visually observed on the sides of the beams. Discussions are given as to the advantages and disadvantages of each method.

42 ENGINEERING↗

DOE OSTI2014

Focal depth measurement of scanning helium ion microscope

When facing the challenges of critical dimension measurement of complicated nanostructures, such as of the three dimension integrated circuit, characterization of the focal depth of microscopes is important. In this Letter, we developed a method for characterizing the focal depth of a scanning helium ion microscope (HIM) by using an atomic force microscope tip characterizer (ATC). The ATC was tilted in a sample chamber at an angle to the scanning plan. Secondary electron images (SEIs) were obtained at different positions of the ATC. The edge resolution of the SEIs shows the nominal diameters of the helium ion beam at different focal levels. With this method, the nominal shapes of the helium ion beams were obtained with different apertures. Our results show that a small aperture is necessary to get a high spatial resolution and high depth of field images with HIM. This work provides a method for characterizing and improving the performance of HIM.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2014

A microwave resonator for limiting depth sensitivity for electron paramagnetic resonance spectroscopy of surfaces

A microwave Surface Resonator Array (SRA) structure is described for use in Electron Paramagnetic Resonance (EPR) spectroscopy. The SRA has a series of anti-parallel transmission line modes that provides a region of sensitivity equal to the cross-sectional area times its depth sensitivity, which is approximately half the distance between the transmission line centers. It is shown that the quarter-wave twin-lead transmission line can be a useful element for design of microwave resonators at frequencies as high as 10 GHz. The SRA geometry is presented as a novel resonator for use in surface spectroscopy where the region of interest is either surrounded by lossy material, or the spectroscopist wishes to minimize signal from surrounding materials. One such application is in vivo spectroscopy of human finger-nails at X-band (9.5 GHz) to measure ionizing radiation dosages. In order to reduce losses associated with tissues beneath the nail that yield no EPR signal, the SRA structure is designed to limit depth sensitivity to the thickness of the fingernail. Another application, due to the resonator geometry and limited depth penetration, is surface spectroscopy in coating or material science. To test this application, a spectrum of 1.44 μM of Mg{sup 2+} doped polystyrene 1.1 mm thick on an aluminum surface is obtained. Modeling, design, and simulations were performed using Wolfram Mathematica (Champaign, IL; v. 9.0) and Ansys High Frequency Structure Simulator (HFSS; Canonsburg, PA; v. 15.0). A micro-strip coupling circuit is designed to suppress unwanted modes and provide a balanced impedance transformation to a 50 Ω coaxial input. Agreement between simulated and experimental results is shown.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2015

Muon background studies for shallow depth Double - Chooz near detector

Muon events are one of the main concerns regarding background in neutrino experiments. The placement of experimental set-ups in deep underground facilities reduce considerably their impact on the research of the expected signals. But in the cases where the detector is installed on surface or at shallow depth, muon flux remains high, being necessary their precise identification for further rejection. Total flux, mean energy or angular distributions are some of the parameters that can help to characterize the muons. Empirically, the muon rate can be measured in an experiment by a number of methods. Nevertheless, the capability to determine the muons angular distribution strongly depends on the detector features, while the measurement of the muon energy is quite difficult. Also considering that on-site measurements can not be extrapolated to other sites due to the difference on the overburden and its profile, it is necessary to find an adequate solution to perform the muon characterization. The method described in this work to obtain the main features of the muons reaching the experimental set-up, is based on the muon transport simulation by the MUSIC software, combined with a dedicated sampling algorithm for shallow depth installations based on a modified Gaisser parametrization. This method provides all the required information about the muons for any shallow depth installation if the corresponding overburden profile is implemented. In this work, the method has been applied for the recently commissioned Double - Chooz near detector, which will allow the cross-check between the simulation and the experimental data, as it has been done for the far detector.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2026

Depth of nutrient uptake by deep-rooted plants is regulated by water availability

The capacity of some plants to access water and nutrients at depths greater than one meter is a critical functional trait that confers resistance to drought and impacts both belowground and shallow soil processes. Here, we report water and strontium isotopic data from an alpine meadow transect showing the correlation between water and nutrient acquisition depths. The isotopic compositions of Sr ( 87 Sr/ 86 Sr ratio) and water in rock and soil, and in plant leaf tissues, reveal that deeper-rooted plants acquire a higher proportion of water, Sr, and cation nutrients that are derived from the saprolite, a zone of silicate weathering, than shallow-rooted grass. A three-decade dendrochemical record reveals that reductions of wet precipitation drive deep-rooted plants to acquire cation nutrients from deeper saprolite or bedrock regions. Thus, the depth of cation nutrient acquisition by deep-rooted plant species at this site is tightly coupled with, and likely determined by, water availability in soil, saprolite, and bedrock. The enhanced uptake of cations as well as water from deeper saprolite zones could impact the rate of bedrock weathering and watershed chemistry during drought.

biogeochemistry↗

DOE OSTI2013

THE ORIGIN AND OPTICAL DEPTH OF IONIZING RADIATION IN THE 'GREEN PEA' GALAXIES

Although Lyman-continuum (LyC) radiation from star-forming galaxies likely drove the reionization of the universe, observations of star-forming galaxies at low redshift generally indicate low LyC escape fractions. However, the extreme [O III]/[O II] ratios of the z = 0.1-0.3 Green Pea galaxies may be due to high escape fractions of ionizing radiation. To analyze the LyC optical depths and ionizing sources of these rare, compact starbursts, we compare nebular photoionization and stellar population models with observed emission lines in the Peas' Sloan Digital Sky Survey (SDSS) spectra. We focus on the six most extreme Green Peas, the galaxies with the highest [O III]/[O II] ratios and the best candidates for escaping ionizing radiation. The Balmer line equivalent widths and He I {lambda}3819 emission in the extreme Peas support young ages of 3-5 Myr, and He II {lambda}4686 emission in five extreme Peas signals the presence of hard ionizing sources. Ionization by active galactic nuclei or high-mass X-ray binaries is inconsistent with the Peas' line ratios and ages. Although stacked spectra reveal no Wolf-Rayet (WR) features, we tentatively detect WR features in the SDSS spectra of three extreme Peas. Based on the Peas' ages and line ratios, we find that WR stars, chemically homogeneous O stars, or shocks could produce the observed He II emission. If hot stars are responsible, then the Peas' optical depths are ambiguous. However, accounting for emission from shocks lowers the inferred optical depth and suggests that the Peas may be optically thin. The Peas' ages likely optimize the escape of LyC radiation; they are old enough for supernovae and stellar winds to reshape the interstellar medium, but young enough to possess large numbers of UV-luminous O or WR stars.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2014

Multi-frequency optical-depth maps and the case for free-free absorption in two compact symmetric radio sources: The CSO candidate J1324 + 4048 and the CSO J0029 + 3457

We obtained dual-polarization very long baseline interferometry observations at six frequencies of the compact symmetric object J0029 + 3457 and the compact symmetric object candidate J1324 + 4048. By comparing the three lower-frequency maps with extrapolations of the high-frequency maps, we produced maps of the optical depth as a function of frequency. The morphology of the optical-depth maps of J1324 + 4048 is strikingly smooth, suggestive of a foreground screen of absorbing gas. The spectra at the intensity peaks fit a simple free-free absorption (FFA) model, with χ{sub ν}{sup 2}≈2, better than a simple synchrotron self-absorption model, in which χ{sub ν}{sup 2}≈3.5--5.5. We conclude that the case for FFA in J1324 + 4048 is strong. The optical-depth maps of J0029 + 3457 exhibit structure, but the morphology does not correlate with that in the intensity maps. The fit of the spectra at the peaks to a simple FFA model yields χ{sub ν}{sup 2}≈1, but because the turnover is gradual, the fit is relatively insensitive to the input parameters. We find that FFA by a thin amount of gas in J0029 + 3457 is likely but not definitive. One compact feature in J0029 + 3457 has an inverted spectrum even at the highest frequencies. We infer this to be the location of the core and estimate an upper limit to the magnetic field of order 3 Gauss at a radius of order 1 pc. In comparison with maps from observations at earlier epochs, no apparent growth in either J1324 + 4048 or J0029 + 3457 is apparent, with upper limits of 0.03 and 0.02 mas yr{sup –1}, corresponding to maximum linear separation speeds of 0.6c and 0.4c.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2014

Gravito-turbulent disks in three dimensions: Turbulent velocities versus depth

Characterizing turbulence in protoplanetary disks is crucial for understanding how they accrete and spawn planets. Recent measurements of spectral line broadening promise to diagnose turbulence, with different lines probing different depths. We use three-dimensional local hydrodynamic simulations of cooling, self-gravitating disks to resolve how motions driven by 'gravito-turbulence' vary with height. We find that gravito-turbulence is practically as vigorous at altitude as at depth. Even though gas at altitude is much too rarefied to be itself self-gravitating, it is strongly forced by self-gravitating overdensities at the midplane. The long-range nature of gravity means that turbulent velocities are nearly uniform vertically, increasing by just a factor of two from midplane to surface, even as the density ranges over nearly three orders of magnitude. The insensitivity of gravito-turbulence to height contrasts with the behavior of disks afflicted by the magnetorotational instability (MRI); in the latter case, non-circular velocities increase by at least a factor of 15 from midplane to surface, with various non-ideal effects only magnifying this factor. The distinct vertical profiles of gravito-turbulence versus MRI turbulence may be used in conjunction with measurements of non-thermal linewidths at various depths to identify the source of transport in protoplanetary disks.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2015

Constraints on primordial magnetic fields from the optical depth of the cosmic microwave background

Damping of magnetic fields via ambipolar diffusion and decay of magnetohydrodynamical (MHD) turbulence in the post decoupling era heats the intergalactic medium (IGM). Delayed recombination of hydrogen atoms in the IGM yields an optical depth to scattering of the cosmic microwave background (CMB). The optical depth generated at z >> 10 does not affect the ''reionization bump'' of the CMB polarization power spectrum at low multipoles, but affects the temperature and polarization power spectra at high multipoles. Writing the present-day energy density of fields smoothed over the damping scale at the decoupling epoch as ρ{sub B,0}=B{sub 0}{sup 2}/2, we constrain B{sub 0} as a function of the spectral index, n{sub B}. Using the Planck 2013 likelihood code that uses the Planck temperature and lensing data together with the WMAP 9-year polarization data, we find the 95% upper bounds of B{sub 0}<0.63, 0.39, and 0.18 nG for n{sub B}=−2.9, −2.5, and −1.5, respectively. For these spectral indices, the optical depth is dominated by dissipation of the decaying MHD turbulence that occurs shortly after the decoupling epoch. Our limits are stronger than the previous limits ignoring the effects of the fields on ionization history. Inverse Compton scattering of CMB photons off electrons in the heated IGM distorts the thermal spectrum of CMB. Our limits on B{sub 0} imply that the y-type distortion from dissipation of fields in the post decoupling era should be smaller than 10{sup −9}, 4×10{sup −9}, and 10{sup −9}, respectively.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2016

Constraining the CMB optical depth through the dispersion measure of cosmological radio transients

The dispersion measure of extragalactic radio transients can be used to measure the column density of free electrons in the intergalactic medium. The same electrons also scatter the Cosmic Microwave Background (CMB) photons, affecting precision measurements of cosmological parameters. We explore the connection between the dispersion measure of radio transients existing during the Epoch of Reionization (EoR) and the total optical depth for the CMB showing that the existence of such transients would provide a new sensitive probe of the CMB optical depth. As an example, we consider the population of FRBs. Assuming they exist during the EoR, we show that: (i) such sources can probe the reionization history by measuring the optical depth to sub-percent accuracy, and (ii) they can be detected with high significance by an instrument such as the Square Kilometer Array.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2014

RANDOM WALKS AND EFFECTIVE OPTICAL DEPTH IN RELATIVISTIC FLOW

We investigate the random walk process in relativistic flow. In the relativistic flow, photon propagation is concentrated in the direction of the flow velocity due to the relativistic beaming effect. We show that in the pure scattering case, the number of scatterings is proportional to the size parameter ξ ≡ L/l {sub 0} if the flow velocity β ≡ v/c satisfies β/Γ >> ξ{sup –1}, while it is proportional to ξ{sup 2} if β/Γ << ξ{sup –1}, where L and l {sub 0} are the size of the system in the observer frame and the mean free path in the comoving frame, respectively. We also examine the photon propagation in the scattering and absorptive medium. We find that if the optical depth for absorption τ{sub a} is considerably smaller than the optical depth for scattering τ{sub s} (τ{sub a}/τ{sub s} << 1) and the flow velocity satisfies β≫√(2τ{sub a}/τ{sub s}), then the effective optical depth is approximated by τ{sub *} ≅ τ{sub a}(1 + β)/β. Furthermore, we perform Monte Carlo simulations of radiative transfer and compare the results with the analytic expression for the number of scatterings. The analytic expression is consistent with the results of the numerical simulations. The expression derived in this study can be used to estimate the photon production site in relativistic phenomena, e.g., gamma-ray burst and active galactic nuclei.

79 ASTRONOMY AND ASTROPHYSICS↗