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At least 379 records · Page 21

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale

The nascent field of microbiome science is transitioning from a descriptive approach of cataloging taxa and functions present in an environment to applying multi-omics methods to investigate microbiome dynamics and function. A large number of new tools and algorithms have been designed and used for very specific purposes on samples collected by individual investigators or groups. While these developments have been quite instructive, the ability to compare microbiome data generated by many groups of researchers is impeded by the lack of standardized application of bioinformatics methods. Additionally, there are few examples of broad bioinformatics workflows that can process metagenome, metatranscriptome, metaproteome and metabolomic data at scale, and no central hub that allows processing, or provides varied omics data that are findable, accessible, interoperable and reusable (FAIR). Here, we review some of the challenges that exist in analyzing omics data within the microbiome research sphere, and provide context on how the National Microbiome Data Collaborative has adopted a standardized and open access approach to address such challenges.

NMDC, Microbiome↗

The Urban Observatory: A Multi-Modal Imaging Platform for the Study of Dynamics in Complex Urban Systems

We describe an “Urban Observatory” facility designed for the study of complex urban systems via persistent, synoptic, and granular imaging of dynamical processes in cities. An initial deployment of the facility has been demonstrated in New York City and consists of a suite of imaging systems—both broadband and hyperspectral—sensitive to wavelengths from the visible (∼400 nm) to the infrared (∼13 micron) operating at cadences of ∼0.01–30 Hz (characteristically ∼0.1 Hz). Much like an astronomical survey, the facility generates a large imaging catalog from which we have extracted observables (e.g., time-dependent brightnesses, spectra, temperatures, chemical species, etc.), collecting them in a parallel source catalog. We have demonstrated that, in addition to the urban science of cities as systems, these data are applicable to a myriad of domain-specific scientific inquiries related to urban functioning including energy consumption and end use, environmental impacts of cities, and patterns of life and public health. We show that an Urban Observatory facility of this type has the potential to improve both a city’s operations and the quality of life of its inhabitants.

54 ENVIRONMENTAL SCIENCES↗

Census of the Young Stellar Population in the Galactic H ii Region Sh2-242

We present here identification and characterization of the young stellar population associated with an active star-forming site Sh2-242. We used our own new optical imaging and spectroscopic observational data, as well as several archival catalogs, e.g., Pan-STARRS 1, Gaia DR2, IPHAS, Wide-field InfraRed Camera, 2MASS, and Spitzer. Slit spectroscopic results confirm the classification of the main ionizing source BD+26 980 as an early-type star of spectral type B0.5 V. The spectrophotometric distance of the star is estimated as 2.08 ± 0.24 kpc, which confirms the source as a member of the cluster. An extinction map covering a large area (diameter ∼50′) is generated with H and K photometry toward the region. From the map, three distinct locations of peak extinction complexes (A {sub V} ≃ 7–17 mag) are identified for the very first time. Using the infrared color excess, a total of 33 Class I and 137 Class II young objects are classified within the region. The IPHAS photometry reveals classification of 36 Hα emitting sources, which might be class II objects. Among 36 Hα emitting sources, 5 are already identified using infrared excess emission. In total, 201 young objects are classified toward S242 from this study. The membership status of the young sources is further windowed with the inclusion of parallax from the Gaia DR2 catalog. Using the optical and infrared color–magnitude diagrams, the young stellar objects are characterized with an average age of ∼1 Myr and masses in the range 0.1–3.0 M {sub ☉}. The census of the stellar content within the region is discussed using combined photometric and spectroscopic data.

79 ASTRONOMY AND ASTROPHYSICS↗

Refining the Census of the Upper Scorpius Association with Gaia

We have refined the census of stars and brown dwarfs in the Upper Sco association (∼10 Myr, ∼145 pc) by (1) updating the selection of candidate members from our previous survey to include the high-precision astrometry from the second data release of Gaia, (2) obtaining spectra of a few hundred candidate members to measure their spectral types and verify their youth, and (3) assessing the membership (largely with Gaia astrometry) of 2020 stars toward Upper Sco that show evidence of youth in this work and previous studies. We arrive at a catalog of 1761 objects that are adopted as members of Upper Sco. The distribution of spectral types among the adopted members is similar to those in other nearby star-forming regions, indicating a similar initial mass function. In previous studies, we have compiled mid-infrared photometry from the Wide-field Infrared Survey Explorer and the Spitzer Space Telescope for members of Upper Sco and used those data to identify the stars that show evidence of circumstellar disks; we present the same analysis for our new catalog of members. As in earlier work, we find that the fraction of members with disks increases with lower stellar masses, ranging from ≲10% for >1 M {sub ⊙} to ∼22% for 0.01–0.3 M {sub ⊙}. Finally, we have estimated the relative ages of Upper Sco and other young associations using their sequences of low-mass stars in M{sub G{sub R{sub P}}} versus G {sub BP} − G {sub RP}. This comparison indicates that Upper Sco is a factor of two younger than the β Pic association (21–24 Myr) according to both nonmagnetic and magnetic evolutionary models.

79 ASTRONOMY AND ASTROPHYSICS↗

The Binary INformation from Open Clusters Using SEDs (BINOCS) Project: Reliable Photometric Mass Determinations of Binary Star Systems in Clusters

We introduce a new binary detection technique, Binary INformation from Open Clusters using SEDs (binocs), which we show is able to determine reliable stellar multiplicity and masses over a much larger mass range than current approaches. This new technique determines accurate component masses of binary and single systems of the open clusters’ main sequence by comparing observed magnitudes from multiple photometric filters to synthetic star spectral energy distributions (SEDs), allowing us to systematically probe the binary population for low-mass stars in clusters for eight well-studied open clusters. We provide new deep, infrared photometric catalogs (1.2–8.0 μm) for the key open clusters NGC 1960 (M36), NGC 2099 (M37), NGC 2420, and NGC 2682 (M67), using observations from NOAO/NEWFIRM and Spitzer/IRAC. Using these deep multiwavelength catalogs, the binocs method is applied to these clusters to determine accurate component masses for unresolved cluster binaries. We explore binary fractions as a function of cluster age, Galactic location, and metallicity.

47 OTHER INSTRUMENTATION↗

Identifying Periodic Variable Stars and Eclipsing Binary Systems with Long-term Las Cumbres Observatory Photometric Monitoring of ZTF J0139+5245

We present the results of our search for variable stars using the long-term Las Cumbres Observatory (LCO) monitoring of white dwarf ZTF J0139+5245 with the two 1.0 m telescope nodes located at McDonald Observatory using the Sinistro imaging instrument. In this search, we find 38 variable sources, of which 27 are newly discovered or newly classified (71%) based on comparisons with previously published catalogs, thereby increasing the number of detections in the field of view under consideration by a factor of ≈2.5. We find that the improved photometric precision per exposure due to longer exposure time for LCO images combined with the greater time sampling of LCO photometry enables us to increase the total number of detections in this field of view. Each LCO image covers a field of view of 26' × 26' and observes a region close to the Galactic plane (b = -9.°4) abundant in stars with an average stellar density of ≈8 arcmin{sup -2}. We perform aperture photometry and Fourier analysis on over 2000 stars across 1560 LCO images spanning 537 days to find 28 candidate BY Draconis variables, three candidate eclipsing binaries of type EA, and seven candidate eclipsing binaries of type EW. In assigning preliminary classifications to our detections, we demonstrate the applicability of the Gaia color–magnitude diagram as a powerful classification tool for variable-star studies.

47 OTHER INSTRUMENTATION↗

A Census of the Taurus Star-forming Region and Neighboring Associations with Gaia*

I have used high-precision photometry and astrometry from the third data release of Gaia to perform a survey for members of the Taurus star-forming region and young associations in its vicinity. This work has produced a new catalog of 532 adopted members of Taurus, which has only minor changes relative to the previous catalog from Esplin & Luhman. I have used the Gaia astrometry to divide the Taurus members into 13 groups that have distinct kinematics. Meanwhile, I have identified 1378 candidate members of seven associations near Taurus. All of these associations have histograms of spectral types that peak near M5 (~0.15 M ⊙ ), resembling other young populations in the solar neighborhood. For the Taurus groups and neighboring associations, I have estimated ages from their sequences of low-mass stars in Hertzsprung–Russell diagrams. Most of the Taurus groups have median ages of ~1–3 Myr, while the associations have ages ranging from 13 to 56 Myr. I have used mid-infrared photometry from the Wide-field Infrared Survey Explorer to search for excess emission from circumstellar disks among the candidate members of the associations. Disks are detected for 51 stars, 20 of which are reported for the first time in this work. Some recent studies have proposed that samples of older stars (≳10 Myr) found in the vicinity of Taurus represent a distributed population that is associated with the Taurus cloud complex. However, I find that most of those stars have kinematics that are inconsistent with any relationship with Taurus.

79 ASTRONOMY AND ASTROPHYSICS↗

The Early Data Release of the Dark Energy Spectroscopic Instrument

The Dark Energy Spectroscopic Instrument (DESI) completed its 5 month Survey Validation in 2021 May. Spectra of stellar and extragalactic targets from Survey Validation constitute the first major data sample from the DESI survey. This paper describes the public release of those spectra, the catalogs of derived properties, and the intermediate data products. In total, the public release includes good-quality spectral information from 466,447 objects targeted as part of the Milky Way Survey, 428,758 as part of the Bright Galaxy Survey, 227,318 as part of the Luminous Red Galaxy sample, 437,664 as part of the Emission Line Galaxy sample, and 76,079 as part of the Quasar sample. In addition, the release includes spectral information from 137,148 objects that expand the scope beyond the primary samples as part of a series of secondary programs. Here, we describe the spectral data, data quality, data products, Large-Scale Structure science catalogs, access to the data, and references that provide relevant background to using these spectra.

79 ASTRONOMY AND ASTROPHYSICS↗

Data Release 1 of the Dark Energy Spectroscopic Instrument

In 2021 May the Dark Energy Spectroscopic Instrument (DESI) collaboration began a 5 yr spectroscopic redshift survey to produce a detailed map of the evolving three-dimensional structure of the Universe between z = 0 and z ≈ 4. DESI’s principal scientific objectives are to place precise constraints on the equation of state of dark energy, the gravitationally driven growth of large-scale structure, and the sum of the neutrino masses, and to explore the observational signatures of primordial inflation. We present DESI DR1, which consists of all data acquired during the first 13 months of the DESI main survey, as well as a uniform reprocessing of the DESI Survey Validation data, which were previously made public in the DESI Early Data Release. The DR1 main survey includes high-confidence redshifts for 18.7M objects, of which 13.1M are spectroscopically classified as galaxies, 1.6M as quasars, and 4M as stars, making DR1 the largest sample of extragalactic redshifts ever assembled. We summarize the DR1 observations, the spectroscopic data-reduction pipeline and data products, large-scale structure catalogs, value-added catalogs, and describe how to access and interact with the data. In addition to fulfilling its core cosmological objectives with unprecedented precision, we expect DR1 to enable a wide range of transformational astrophysical studies and discoveries.

79 ASTRONOMY AND ASTROPHYSICS↗

The Backup Program of the Dark Energy Spectroscopic Instrument’s Milky Way Survey

The Milky Way Backup Program (MWBP), a survey currently underway with the Dark Energy Spectroscopic Instrument (DESI) on the Nicholas U. Mayall 4 m Telescope, works at the margins of the DESI Main surveys to obtain spectra of millions of additional stars from the Gaia catalog. Efficiently utilizing times between ∼12° and 18° twilight and poor weather conditions, the MWBP extends the range of stellar sources studied to both brighter magnitudes and lower Galactic latitude and declination than the stars studied in DESI’s Main Milky Way Survey. While the MWBP prioritizes candidate giant stars selected from the Gaia catalog (using color and parallax criteria), it also includes an unbiased sample of bright stars (i.e., 11.2 ≲ G < 16 mag) as well as fainter sources (to G ≲ 19 mag). As of 2025 March 1, the survey had obtained spectra of ∼7 million stars, approximately 1.2 million of which are included in the DESI Data Release 1. The DESI spectra cover the wavelength range from 3600 to 9800 Å at a resolution λ/Δλ varying from 2000 to 5000. The full survey, when completed, will cover an area of more than 21,000 deg 2 and include approximately 10 million Gaia sources, roughly equal to the number of stellar spectra obtained through the DESI Main Survey, while only utilizing ≈9% of all DESI observing time. This paper provides an overview of the MWBP, describing the target selection, observing strategy, and an introduction to the resulting data.

79 ASTRONOMY AND ASTROPHYSICS↗

A Cross-correlation Study of High-energy Neutrinos and Tracers of Large-scale Structure

The origin of the bulk of the astrophysical neutrinos detected by the IceCube Observatory remains a mystery. Previous source-finding analyses compared the directions of IceCube events and individual sources in astrophysical catalogs. The source association method is technically challenging when the number of source candidates is much larger than the number of the observed astrophysical neutrinos. In this paper, we show that in this large source number regime, a two-point cross-correlation analysis of neutrino data and source catalog can instead be used to constrain potential source populations for the high-energy astrophysical neutrinos, and provide spatial evidence for the existence of astrophysical neutrinos. We present an analysis of the cross-correlation of the IceCube 2010–2012 point-source data and a WISE–2MASS galaxy sample. While we find no significant detection of cross-correlation with the publicly available neutrino data set, we show that, when applied to the full IceCube data, which has a longer observation time and higher astrophysical neutrino purity, our method has sufficient statistical power to detect a cross-correlation signal if the neutrino sources trace the large-scale structure of the universe.

79 ASTRONOMY AND ASTROPHYSICS↗

RELICS: A Very Large ( θ E ~ 40") Cluster Lens—RXC J0032.1+1808

Extensive surveys with the Hubble Space Telescope over the past decade, targeting some of the most massive clusters in the sky, have uncovered dozens of galaxy cluster strong lenses. The massive cluster strong-lens scale is typically θ E ~ 10'' to ~30''–35'', with only a handful of clusters known with Einstein radii θ E ~ 40'' or above (for z source = 2, nominally). Here we report another very large cluster lens, RXC J0032.1+1808 (z = 0.3956), the second-richest cluster in the redMapper cluster catalog and the 85th most massive cluster in the Planck Sunyaev–Zel'dovich catalog. With our light-traces-mass and fully parametric approaches, we construct strong-lensing models based on 18 multiple images of five background galaxies newly identified in the Hubble data, mainly from the Reionization Lensing Cluster Survey (RELICS), in addition to a known sextuply imaged system in this cluster. Furthermore, we compare these models to Lenstool and GLAFIC models that were produced independently as part of the RELICS program. All models reveal a large effective Einstein radius of θ E ≃ 40'' (z source = 2), owing to the obvious concentration of substructures near the cluster center. Although RXC J0032.1+1808 has a very large critical area and high lensing strength, only three magnified high-redshift candidates are found within the field targeted by RELICS. Nevertheless, we expect many more high-redshift candidates will be seen in wider and deeper observations with Hubble or the James Webb Space Telescope. Finally, the comparison between several algorithms demonstrates that the total error budget is largely dominated by systematic uncertainties.

79 ASTRONOMY AND ASTROPHYSICS↗

Chasing Accreted Structures within Gaia DR2 Using Deep Learning

In previous work, we developed a deep neural network classifier that only relies on phase-space information to obtain a catalog of accreted stars based on the second data release of Gaia (DR2). In this paper, we apply two clustering algorithms to identify velocity substructure within this catalog. We focus on the subset of stars with line-of-sight velocity measurements that fall in the range of Galactocentric radii $r\in [6.5,9.5]\,{\rm{kpc}}$ and vertical distances $| z| \lt 3\,{\rm{kpc}}$. Known structures such as Gaia Enceladus and the Helmi stream are identified. The largest previously unknown structure, Nyx, is a vast stream consisting of at least 200 stars in the region of interest. This study displays the power of the machine-learning approach by not only successfully identifying known features but also discovering new kinematic structures that may shed light on the merger history of the Milky Way.

Astronomy & Astrophysics↗

Identifying RR Lyrae Variable Stars in Six Years of the Dark Energy Survey

We present a search for RR Lyrae stars using the full six-year data set from the Dark Energy Survey covering ∼5000 deg2 of the southern sky. Using a multistage multivariate classification and light-curve template-fitting scheme, we identify RR Lyrae candidates with a median of 35 observations per candidate. We detect 6971 RR Lyrae candidates out to ∼335 kpc, and we estimate that our sample is >70% complete at ∼150 kpc. We find excellent agreement with other wide-area RR Lyrae catalogs and RR Lyrae studies targeting the Magellanic Clouds and other Milky Way satellite galaxies. We fit the smooth stellar halo density profile using a broken-power-law model with fixed halo flattening (q = 0.7), and we find strong evidence for a break at with an inner slope of and an outer slope of . We use our catalog to perform a search for Milky Way satellite galaxies with large sizes and low luminosities. Using a set of simulated satellite galaxies, we find that our RR Lyrae-based search is more sensitive than those using resolved stellar populations in the regime of large (r h ≳ 500 pc), low-surface-brightness dwarf galaxies. A blind search for large, diffuse satellites yields three candidate substructures. The first can be confidently associated with the dwarf galaxy Eridanus II. The second has a distance and proper motion similar to the ultrafaint dwarf galaxy Tucana II but is separated by ∼5 deg. The third is close in projection to the globular cluster NGC 1851 but is ∼10 kpc more distant and appears to differ in proper motion.

79 ASTRONOMY AND ASTROPHYSICS↗

The Hobby–Eberly Telescope Dark Energy Experiment (HETDEX) Survey Design, Reductions, and Detections*

In this work, we describe the survey design, calibration, commissioning, and emission-line detection algorithms for the Hobby–Eberly Telescope Dark Energy Experiment (HETDEX). The goal of HETDEX is to measure the redshifts of over a million Lyα emitting galaxies between 1.88 < z < 3.52, in a 540 deg 2 area encompassing a comoving volume of 10.9 Gpc 3 . No preselection of targets is involved; instead the HETDEX measurements are accomplished via a spectroscopic survey using a suite of wide-field integral field units distributed over the focal plane of the telescope. This survey measures the Hubble expansion parameter and angular diameter distance, with a final expected accuracy of better than 1%. Additionally, we detail the project's observational strategy, reduction pipeline, source detection, and catalog generation, and present initial results for science verification in the Cosmological Evolution Survey, Extended Groth Strip, and Great Observatories Origins Deep Survey North fields. We demonstrate that our data reach the required specifications in throughput, astrometric accuracy, flux limit, and object detection, with the end products being a catalog of emission-line sources, their object classifications, and flux-calibrated spectra.

79 ASTRONOMY AND ASTROPHYSICS↗

The Observed Evolution of the Stellar Mass–Halo Mass Relation for Brightest Central Galaxies

We quantify evolution in the cluster-scale stellar mass–halo mass (SMHM) relation's parameters using 2323 clusters and brightest central galaxies (BCGs) over the redshift range 0.03 ≤ z ≤ 0.60. The precision on the inferred SMHM parameters is improved by including the magnitude gap (m gap ) between the BCG and fourth-brightest cluster member (M14) as a third parameter in the SMHM relation. At fixed halo mass, accounting for m gap , through a stretch parameter, reduces the SMHM relation's intrinsic scatter. To explore this redshift range, we use clusters, BCGs, and cluster members identified using the Sloan Digital Sky Survey C4 and redMaPPer cluster catalogs and the Dark Energy Survey redMaPPer catalog. Through this joint analysis, we detect no systematic differences in BCG stellar mass, m gap , and cluster mass (inferred from richness) between the data sets. We utilize the Pareto function to quantify each parameter's evolution. We confirm prior findings of negative evolution in the SMHM relation's slope (3.5σ), and detect negative evolution in the stretch parameter (4.0σ) and positive evolution in the offset parameter (5.8σ). This observed evolution, combined with the absence of BCG growth, when stellar mass is measured within 50 kpc, suggests that this evolution results from changes in the cluster's m gap . For this to occur, late-term growth must be in the intracluster light surrounding the BCG. We also compare the observed results to IllustrisTNG 300-1 cosmological hydrodynamic simulations and find modest qualitative agreement. However, the simulations lack the evolutionary features detected in the real data.

79 ASTRONOMY AND ASTROPHYSICS↗

A Systematic Exploration of Kilonova Candidates from Neutron Star Mergers during the Third Gravitational-wave Observing Run

We present a comprehensive analysis of 653 optical candidate counterparts reported during the third gravitational-wave (GW) observing run. Our sample concentrates on candidates from the 15 events (published in GWTC-2, GWTC-3, or not retracted on GraceDB) that had a >1% chance of including a neutron star in order to assess their viability as true kilonovae. In particular, we leverage tools available in real time, including pre-merger detections and cross-matching with catalogs (i.e., point-source, variable-star, quasar and host-galaxy redshift data sets), to eliminate 65% of candidates in our sample. We further employ spectroscopic classifications, late-time detections, and light-curve behavior analyses and conclude that 66 candidates remain viable kilonovae. These candidates lack sufficient information to determine their classifications, and the majority would require luminosities greater than that of AT 2017gfo. Pre-merger detections in public photometric survey data and comparison of cataloged host-galaxy redshifts with the GW event distances are critical to incorporate into vetting procedures, as these tools eliminated >20% and >30% of candidates, respectively. We expect that such tools that leverage archival information will significantly reduce the strain on spectroscopic and photometric follow-up resources in future observing runs. Finally, we discuss the critical role prompt updates from GW astronomers to the EM community play in reducing the number of candidates requiring vetting.

79 ASTRONOMY AND ASTROPHYSICS↗

Minkowski Functionals of SDSS-III BOSS: Hints of Possible Anisotropy in the Density Field?

We present measurements of the Minkowski functionals extracted from the SDSS-III BOSS catalogs. After defining the Minkowski functionals, we describe how an unbiased reconstruction of these statistics can be obtained from a field with masked regions and survey boundaries, validating our methodology with Gaussian random fields and mock galaxy snapshot data. From the BOSS galaxy data, we generate a set of four density fields in three dimensions corresponding to the northern and southern skies of LOWZ and CMASS catalogs, smoothing over large scales (Gaussian smoothing scale of 35 Mpc) such that the field is perturbatively non-Gaussian. We extract the Minkowski functionals from each data set separately, and measure their shapes and amplitudes by fitting a Hermite polynomial expansion. For the shape parameter of the Minkowski functional curves a0, that is related to the bispectrum of the field, we find that the LOWZ-South data presents a systematically lower value of a 0 = –0.080 ± 0.040 than its northern sky counterpart a 0 = 0.032 ± 0.024. Although the significance of this discrepancy is not very high, it potentially indicates some systematics in the data or that the matter density field exhibits anisotropy at low redshift. By assuming a standard isotropic flat ΛCDM cosmology, the amplitudes of the Minkowski functionals from the combination of northern and southern sky data give the constraints Ω c h 2 n s = 0.110 ± 0.006 and 0.111 ± 0.008 for CMASS and LOWZ, respectively, which is in agreement with the Planck ΛCDM best-fit Ω c h 2 n s = 0.116 ± 0.001.

79 ASTRONOMY AND ASTROPHYSICS↗