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At least 379 records · Page 21

A Diazo Linker Ligand Promotes Flexibility and Induced Fit Binding in a Microporous Copper Coordination Network

Abstract Flexible organic linkers represent an intuitive and effective strategy to design flexible metal–organic materials. We report herein a systematic study concerning the effect of varying the central bond of mixed pyridyl‐benzoate linkers, L, upon the flexibility of three isostructuralkddtopology microporous coordination networks (CNs) of formula ML 2 :X‐kdd‐1‐Cu,1= L = (E)‐4‐(pyridin‐4‐yldiazenyl)benzoate;X‐kdd‐2‐Cu,2= L = (E)‐4‐(2‐(pyridin‐4‐yl)vinyl)benzoate; the previously reportedX‐kdd‐3‐Cu,3= L = 4‐(pyridin‐4‐ylethynyl)benzoate. As revealed by single crystal x‐ray diffraction (SCXRD) and gas sorption studies,X‐kdd‐1‐Cu, exhibited gate‐opening during CO 2 and hydrocarbon (C2 and C8) sorption experiments whereas the other two CNs did not. Insight into these phase transformations was gained from in situ variable‐pressure and variable temperature powder X‐ray diffraction (PXRD), SCXRD, and modeling. Rotation of ligand1around the diazo bond, torsion angle changes between phenyl and carboxylate moieties, and deformation of the Cu‐based rod building blocks enabled activatedX‐kdd‐1‐Cuto form new phases with C8 isomers and CH 2 Cl 2 , CH 2 Cl 2 inducing contraction of the activated phase. Computational studies suggest that1enables flexibility thanks to its lower barrier of deformation versus2or3. This study teaches that diazo moieties could offer a general strategy to enhance the flexibility of CNs.

Chemistry↗

Supply analysis of preferential market incentive for energy crops

This analysis explores the valuation of feedstock quality attributes of switchgrass and miscanthus – two energy crops poised for future expansion – and compares the relative economic availability of these two crops under two scenarios: (i) uniform price assumptions (i.e., no incentive for quality), and (ii) a scenario of a price premium based on convertibility (i.e., an incentive for quality). Given data on cellulose content, hemicellulose content, and their relative convertibility, miscanthus is expected to be 11% more efficient at conversion to biofuels than switchgrass under the biochemical conversion route. Based on this scenario of improved conversion efficiency and associated profit, we simulate an 11% price premium for miscanthus over other feedstocks in a base-case scenario. By adding this price premium, supplies of miscanthus increase over the base case by about 4 million (44%), 94 million (64%), and 166 million (94%) tons in year 0, 10, and 20 after simulated contracts for production are initiated respectively. These results emphasize that custom simulations are needed to quantify feedstock availability if supplies are intended to reflect grower response to industry demands for feedstock quality specifications. Farmers can grow ‘peas or carrots’, and price signals from biorefineries will influence what energy crops they produce. Recognizing that the energy crop mix is tractable according to quality characteristics is relevant both for near-term and long-term biofuels research and development. Here, we recommend accounting for market preferences for quality attributes when estimating potential future supplies of energy crops.

09 BIOMASS FUELS↗

Synthesis and Characterization of Homoleptic Rare Earth Nitrato Complexes with the Quaternary Ammonium Cations Et 4 N + and n Pr 4 N +

Two periodic series of homoleptic rare earth nitrato com plexes, [R 4 N] x [M(NO 3 ) y ](M = La-Nd, Sm-Lu, Y); R = Et, $n$ Pr; x = 2-3; y = 5-6) have been synthesized, and charac terized by single crystal X-ray diffraction, IR and Raman spectroscopy, comparing the solid state speciation of the nitrate ions as a function of lanthanide ion and quarternary ammonium cation. The series of the form [Et 4 N] 3 [Ln(NO 3 ) 6 ] crystallizes in the rhombohedral space group $R$$\bar{3}$, as a twelve-coordinate hexanitrato complex [Et 4 N] 3 [Ln(NO 3 ) 6 ] with cocrystallized HNO 3 for La, Pr, and Nd. For Ce, a distinct orthorhombic phase retaining the same formula, [Et 4 N] 3 [Ce(NO 3 ) 6 ] is isolated in the absence of HNO 3 to prevent oxidation of the Ce(III) to Ce(IV) in nitric acid. A ten-coordinate pentanitrato complex, [Et 4 N] 2 [Ln(NO 3 ) 5 ], in monoclinic symmetry forms for the remainder of the series, and for Y(III). The entire series crystallized in the presence of [ $n$ Pr 4 N] + counterions forms a pentanitrato complex [ $n$ Pr 4 N] 2 [M(NO 3 ) 5 ] in the orthorhombic space group, $Pccn$. In conclusion, analysis of trends in the structural and spectroscopic characteristics of these series reveal insight into the structure directing influences of both the lanthanide contraction and the quarternary ammonium cations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Structural and Spectroscopic Trends in Alkali Tris(Acetato)Actinyl(VI) Complexes

A series of alkali tris(acetato)actinyl(VI) compounds M[AnO 2 (CH 3 COO) 3 ] (M=Na, K, Rb, Cs and An=U, Np, Pu) is reported, applying a combination of singlecrystal X-ray diffraction, solid-state Raman spectroscopy, and U(VI) luminescence spectroscopy for their structural and spectroscopic characterization. The results show that complexes formed from the same alkali metal but different actinyl ions are mostly isostructural. The symmetric actinyl stretch (ν 1 (An=O yl )) in these isostructural complexes undergoes a redshift within the actinide series despite the shortening of the actinyl bond due to the actinide contraction. Complexes formed from the same actinyl but co-crystallized with different alkali metals show a progression toward lower space group symmetry. While the actinyl bond length remains unmodulated within the alkali series, a small redshift of ν 1 (An=O yl ) is observed, indicating minor changes in the vibrational properties of the actinyl moiety caused by the structural progression towards lower symmetry. This subtle change is also evidenced by a redshift of the U(VI) luminescence spectra within the M[UO 2 (CH 3 COO) 3 ] series.

Raman↗

iSPECTRON: a simulation interface for linear and nonlinear spectra with ab-initio quantum chemistry software

We introduce iSPECTRON, an open source (under the Educational Community License version 2.0) program that parses data from common quantum chemistry software (NWChem, OpenMolcas, Gaussian, Cobramm, etc.), produces the input files for the simulation of linear and nonlinear spectroscopy of molecules with the Spectron code, and analyzes the spectra with a broad range of tools. Vibronic spectra are expressed in term of the electronic eigenstates, obtained through quantum chemistry computations, and vibrational/bath effects are incorporated in the framework of the displaced harmonic oscillator model, where all required quantities are computed at the Franck-Condon point. The code capabilities are illustrated by simulating linear absorption, transient absorption and two dimensional electronic spectra of the pyrene molecule. Two levels of electronic structure theory, TDDFT (with NWChem) and RASSCF/RASPT2 (with OpenMolcas), are compared where possible. Acknowledgements: F.S., A.N., D.R.N., N.G., S.M, M.G. acknowledge support from the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, Chemical Sciences, Geosciences, and Biosciences Division under Award Nos. DE-SC0019484, KC-030103172684. The Spectron code was developed with support from the National Science Foundation (Grant CHE- 1953045). This research benefited from computational resources provided by EMSL, a DOE Office of Science User Facility sponsored by the Office of Biological and Environmental Research and located at PNNL. PNNL is operated by Battelle Memorial Institute for the United States Department of Energy under DOE Contract No. DE-AC05-76RL1830.

Segatta, Francesco↗

Ca X ML: Chemistry‐informed machine learning explains mutual changes between protein conformations and calcium ions in calcium‐binding proteins using structural and topological features

Proteins' flexibility is a feature in communicating changes in cell signaling instigated by binding with secondary messengers, such as calcium ions, associated with the coordination of muscle contraction, neurotransmitter release, and gene expression. When binding with the disordered parts of a protein, calcium ions must balance their charge states with the shape of calcium-binding proteins and their versatile pool of partners depending on the circumstances they transmit. Accurately determining the ionic charges of those ions is essential for understanding their role in such processes. However, it is unclear whether the limited experimental data available can be effectively used to train models to accurately predict the charges of calcium-binding protein variants. Here, we developed a chemistry-informed, machine-learning algorithm that implements a game theoretic approach to explain the output of a machine-learning model without the prerequisite of an excessively large database for high-performance prediction of atomic charges. We used the ab initio electronic structure data representing calcium ions and the structures of the disordered segments of calcium-binding peptides with surrounding water molecules to train several explainable models. Network theory was used to extract the topological features of atomic interactions in the structurally complex data dictated by the coordination chemistry of a calcium ion, a potent indicator of its charge state in protein. Our design created a computational tool of Ca X ML, which provided a framework of explainable machine learning model to annotate ionic charges of calcium ions in calcium-binding proteins in response to the chemical changes in an environment. Our framework will provide new insights into protein design for engineering functionality based on the limited size of scientific data in a genome space.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Topological Assembly of a Deployable Hoberman Flight Ring from DNA

Deployable geometries are finite auxetic structures that preserve their overall shapes during expansion and contraction. The topological behaviors emerge from intricately arranged elements and their connections. Despite the considerable utility of such configurations in nature and in engineering, deployable nanostructures have never been demonstrated. In this paper, a deployable flight ring, a simplified planar structure of Hoberman sphere is shown, using DNA origami. The DNA flight ring consists of topologically assembled six triangles in two layers that can slide against each other, thereby switching between two distinct (open and closed) states. The origami topology is a trefoil knot, and its auxetic reconfiguration results in negative Poisson’s ratios. This work shows the feasibility of deployable nanostructures, providing a versatile platform for topological studies and opening new opportunities for bioengineering.

59 BASIC BIOLOGICAL SCIENCES↗

Ionically Active MXene Nanopore Actuators

Reversible electrochemical intercalation of cations into the interlayer space of 2D materials induces tunable physical and chemical properties in them. In MXenes, a large class of recently developed 2D carbides and nitrides, low intercalation energy, high storage capacitance, and reversible intercalation of various cations have led to their improved performance in sensing and energy storage applications. In this work, a coupled nanopore-actuator system where an ultrathin free-standing MXene film serves as a nanopore support membrane and ionically active actuator is reported. In this system, the contactless MXene membrane in the electric field affects the cation movement in the field through their (de)intercalation between individual MXene flakes. This results in reversible swelling and contraction of the membrane monitored by ionic conductance through the nanopore. This unique nanopore coupled to a mechanical actuation system could provide new insights into designing single-molecule biosensing platforms at the nanoscale.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Mechanism of Contrasting Ionic Conductivities in Li 2 ZrCl 6 via I and Br Substitution

Understanding the complex structural and chemical factors that influence ionic conduction mechanisms is paramount for developing advanced inorganic superionic conductors in all‐solid‐state batteries, particularly halide solid electrolytes with excellent electrochemical oxidative stability and mechanical sinterability. Herein, contrasting ionic conduction behaviors in I − and Br − substituted Li 2 ZrCl 6 are revealed by combining experimental structural analyses and theoretical calculations. The inter‐slab distance along the c ‐axis, which varies with the anion substitution and M2‐M3 site disorder, is a key factor for opening the ab ‐plane conduction and facilitating the overall Li + conduction. Increased M3 site occupancy generally leads to contracted inter‐slab distance. The substantial increase in Li + conductivity upon I substitution (from 0.40 to 0.91 mS cm −1 ) originates from a sufficiently expanded lattice volume owing to its large ionic radii (I − = 2.20 Å), particularly inter‐slab distance that facilitates the ab intra‐plane Li + conduction, which also benefits from decreased M2‐M3 disorder. In contrast, Br (Br − = 1.96 Å) substitution results in insufficiently expanded Li + channels, which, exacerbated by increased M2‐M3 disorder, leads to degradation in Li + conductivity. Implementing I − substituted Li 2 ZrCl 6 resulted in superior electrochemical performance in LiCoO 2 ||Li‐In cells compared to those with an unsubstituted catholyte.

36 MATERIALS SCIENCE↗

An overview of the evolving jurisdictional scope of the U.S. Clean Water Act for hydrologists

Abstract The Clean Water Act (CWA) is the primary federal mechanism by which the physical, chemical, and biological integrity of streams, lakes, and wetlands are protected in the United States. The CWA has evolved considerably since its initial passage in 1948, including explicit expansions and contractions of jurisdictional scope through a series of legislative actions, court decisions, and agency rules. Here, we provide a practical summary of the CWA's evolution, detailing the major updates or revisions and their circumstances. Additionally, we identify the jurisdictional scope of the law for rivers and streams, lakes, and wetlands based on the language used and implementation by the agencies during the same time period. While the rulemaking process commonly uses language that will be abstract to many hydrologists, understanding the on‐the‐ground implications, quantifying regulatory (un)certainties, and assessing the magnitude of changes through time is important to understanding the implications of environmental regulation development, litigation, and enforcement. Thus, we translate the enforcement norms and definitions into quantitative estimates for Clean Water Act scope in the Wabash River Basin (Illinois, Indiana, and Ohio, USA) as a demonstration of the spatial consequences of changing regulatory language. This article is categorized under: Engineering Water > Planning Water Human Water > Water Governance Water and Life > Conservation, Management, and Awareness

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Modeling Farmers’ Adoption Potential to New Bioenergy Crops: An Agent-Based Approach

The use of fossil fuels is the primary source of greenhouse gas emissions but there are alternatives to these especially in the form of biofuels, fuels derived from bioenergy crops. This paper aims to determine farmers’ potential adoption rates of newly introduced bioenergy crops with a specific example of carinata in the state of Georgia. The determination is done using an agent-based modeling technique with two principal assumptions—farmers are profit maximizer and they are influenced by neighboring farmers. Two diffusion parameters (traditional and expansion) are followed along with two willingness (high and low) scenarios to switch at varying production economics to carinata and other prominent traditional field crops (cotton, peanuts, corn) in the study region. We find that a contract prices around $9, $8 and $7 can be a viable option for encouraging farmers to adopt carinata in low, average, and high profit conditions, respectively. Expansion diffusion (that diffuses all over the geographical area), rather than centered to the few places like traditional diffusion at the early stage of adoption in conjunction with higher willingness conditions influences higher adoption rates in the short-term. As such, the model can be used to understand the behavioral economics of carinata in Georgia and beyond, as well as offering a potential tool to study similar bioenergy crops.

Ullah, Kazi↗

U.S. Commercial Building Stock Analysis of COVID-19 Mitigation Strategies

The COVID-19 pandemic highlights the importance of improving building indoor air quality to reduce occupants' chances of contracting airborne illness. The ASHRAE Epidemic Task Force (ASHRAE-ETF) released several COVID-19 mitigation strategies at the onset of the pandemic. This study explores four of those recommendations for reducing transmission of COVID-19 inside buildings: (1) 100% outdoor air ventilation, (2) MERV-13 or better filters, (3) demand control ventilation removal, and (4) HVAC flushing mode. These recommendations were simulated and assessed using ComStock, a model of the U.S. commercial building stock. The study showed the 100% outdoor air ventilation recommendation had the largest impact on energy consumption, noncoincident peak demand, and thermostat violations. Removing demand control ventilation had the smallest national aggregate impact, installing MERV-13 filters led to slight increases in energy use and peak demand, and HVAC outdoor air flushing led to modest energy use and peak demand increases.

building energy modelling↗

Efficiently evaluating loop integrals in the EFTofLSS using QFT integrals with massive propagators

We develop a new way to analytically calculate loop integrals in the Effective Field Theory of Large Scale-Structure. Previous available methods show severe limitations beyond the one-loop power spectrum due to analytical challenges and computational and memory costs. Our new method is based on fitting the linear power spectrum with cosmology-independent functions that resemble integer powers of quantum field theory massive propagators with complex masses. A remarkably small number of them is sufficient to reach enough accuracy. Similarly to former approaches, the cosmology dependence is encoded in the coordinate vector of the expansion of the linear power spectrum in our basis. We first produce cosmology-independent tensors where each entry is the loop integral evaluated on a given combination of basis vectors. For each cosmology, the evaluation of a loop integral amounts to contracting this tensor with the coordinate vector of the linear power spectrum. The 3-dimensional loop integrals for our basis functions can be evaluated using techniques familiar to particle physics, such as recursion relations and Feynman parametrization. We apply our formalism to evaluate the one-loop bispectrum of galaxies in redshift space. The final analytical expressions are quite simple and can be evaluated with little computational and memory cost. We show that the same expressions resolve the integration of all one-loop N-point function in the EFTofLSS. This method, which is originally presented here, has already been applied in the first one-loop bispectrum analysis of the BOSS data to constraint ΛCDM parameters and primordial non-Gaussianities [1, 2].

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Colliding localized, lumpy holographic shocks with a granular nuclear structure

We apply a recent and simple technique which speeds up the calculation of localized collisions in holography to study more realistic models of the pre-hydrodynamic phase of heavy ion collisions using gauge/gravity duality. Our initial data reflects the lumpy nuclear structure of real heavy ions and our projectiles’ aspect ratio mimics the Lorentz contraction of nuclei during RHIC collisions. At the hydrodynamization time of the central region of the quark gluon plasma developed during the collision, we find that most of the system’s vorticity is located well outside the hydrodynamized part of the plasma. Only the relativistic corrections to the thermal vorticity within the hydrodynamized region are non-negligible. We compare the transverse flow shortly after the collision with previous results which did not use granular initial conditions and determine the proper energy density and fluid velocity in the hydrodynamized subregion of the plasma.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

$T\overline{T}$ deformations and the width of fundamental particles

We provide a simple geometric meaning for deformations of so-called $T\overline{T}$ type in relativistic and non-relativistic systems. Deformations by the cross products of energy and momentum currents in integrable quantum field theories are known to modify the thermodynamic Bethe ansatz equations by a “CDD factor”. In turn, CDD factors may be interpreted as additional, fixed shifts incurred in scattering processes: a finite width added to the fundamental particles (or, if negative, to the free space between them). We suggest that this physical effect is a universal way of understanding $T\overline{T}$ deformations, both in classical and quantum systems. We first show this in non-relativistic systems, with particle conservation and translation invariance, using the deformation formed out of the densities and currents of particles and momentum. This holds at the level of the equations of motion, and for any interaction potential, integrable or not. We then argue, and show by similar techniques in free relativistic particle systems, that $T\overline{T}$ deformations of relativistic systems produce the equivalent phenomenon, accounting for length contractions. We also show that, in both the relativistic and non-relativistic cases, the width of particles is equivalent to a state-dependent change of metric, where the distance function discounts the particles’ widths, or counts the additional free space. This generalises and explains the known field-dependent coordinate change describing $T\overline{T}$ deformations. The results connect such deformations with generalised hydrodynamics, where the relations between scattering shifts, widths of particles and state-dependent changes of metric have been established.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Tropical amplitudes for colored Lagrangians

Recently a new formulation for scattering amplitudes in Tr(Φ 3 ) theory has been given based on simple combinatorial ideas in the space of kinematic data. This allows all-loop integrated amplitudes to be expressed as “curve integrals” defined using tropical building blocks — the “headlight functions”. This paper shows how the formulation extends to the amplitudes of more general Lagrangians. We will present a number of different ways of introducing tropical “numerator functions” that allow us to describe general Lagrangian interactions. The simplest family of these “tropical numerators” computes the amplitudes of interesting Lagrangians with infinitely many interactions. We also describe methods for tropically formulating the amplitudes for general Lagrangians. One uses a variant of “Wick contraction” to glue together numerator factors for general interaction vertices. Another uses a natural characterization of polygons on surfaces to give a novel combinatorial description of all possible diagrams associated with arbitrary valence interactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Dielectron production at midrapidity at low transverse momentum in peripheral and semi-peripheral Pb–Pb collisions at ${\sqrt{s}}_{\textrm{NN}}$ = 5.02 TeV

The first measurement of the e + e – pair production at low lepton pair transverse momentum (p T,ee ) and low invariant mass (m ee ) in non-central Pb–Pb collisions at ${\sqrt{s}}_{\textrm{NN}}$ = 5.02 TeV at the LHC is presented. The dielectron production is studied with the ALICE detector at midrapidity (|η e | < 0.8) as a function of invariant mass (0.4 ≤ m ee < 2.7 GeV/c 2 ) in the 50–70% and 70–90% centrality classes for p T,ee < 0.1 GeV/c, and as a function of p T,ee in three m ee intervals in the most peripheral Pb–Pb collisions. Below a p T,ee of 0.1 GeV/c, a clear excess of e + e – pairs is found compared to the expectations from known hadronic sources and predictions of thermal radiation from the medium. The m ee excess spectra are reproduced, within uncertainties, by different predictions of the photon–photon production of dielectrons, where the photons originate from the extremely strong electromagnetic fields generated by the highly Lorentz-contracted Pb nuclei. Lowest-order quantum electrodynamic (QED) calculations, as well as a model that takes into account the impact-parameter dependence of the average transverse momentum of the photons, also provide a good description of the p T,ee spectra. The measured $\sqrt{\left\langle {p}_{\textrm{T},\textrm{ee}}^2\right\rangle }$ of the excess p T,ee spectrum in peripheral Pb–Pb collisions is found to be comparable to the values observed previously at RHIC in a similar phase-space region.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗