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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 379 records · Page 21
All sourcesNASA NTRSDOE OSTI
DOE OSTI2017

Compressive Classification for TEM-EELS

Acquiring atomic-resolution images of beam sensitive materials or under dynamic conditions (e.g. operando STEM) is very difficult and requires precise dose fractioning to minimize the dose delivered to the sample and acquire the data more rapidly than dynamics present. Typical methods of low-dose STEM imaging include adjusting the beam current, dwell-time, and probe Scanning transmission electron microscopy (STEM) is used routinely to obtain atomic-resolution images of a small selection of radiation tolerant materials under stable conditions.size. All three of these determine the dose over a spatial area in STEM. Recently, compressive sensing [1] has been applied to electron microscopy. The computational imaging method of inpainting [2] has been proposed as a method to reduce dose and increase acquisition speed for STEM. Inpainting is a technique to recover missing pixels in an image. By skipping pixels (randomly) during acquisition, a fourth dose-control mechanism is realized [3]. A few implementations of randomly-subsampled STEM exist (e.g., [4]). To make the concepts of compressive sensing accessible to the microscopy community we begin with an example using atomic resolution images of a GaAs crystal (see Figure 1). Because the crystal is periodic it has a sparse representation in reciprocal space. In fact, a sparse representation is a key component of compressive sensing. If an image is sub-sampled randomly we find that the Fourier transform remains sparse, but becomes increasing noisy as less and less data is acquired. Yet, by finding the peaks in the reciprocal image and removing the noise it is possible to recover atomic resolution images with only 1% of the pixels. Figure 1 shows the reconstruction process for GaAs sub-sampled at 50%, 10%, 5%, and 1%. Periodic images form a special class for which the optimal sampling approach (according to CS theory) is a random selection of pixels. For non-periodic images, such as those arising in in-situ STEM, methods such as dictionary learning are necessary [2,5]. The data can be compressed in time for TEM [5] or pixels can be skipped randomly for STEM. There are several issues that arise in developing a random scan for STEM [4] and a coded aperture for TEM. The remainder of the talk will address these issues. References: [1] E Candes and M Wakin. Signal Processing Magazine, IEEE. 2(25) (2008), pp. 21. [2] A Stevens, Pu Y, Sun Y, et al. Artificial Intelligence & Statistics (AISTATS), 2017. [3] A Stevens, H Yang, L Carin et al. Microscopy 63(1), (2014), pp. 41. [4] L Kovarik, A Stevens, A Liyu et al. Appl. Phys. Lett. 109, 164102 (2016). [5] A Stevens, L Kovarik, P Abellan et al. Adv. Structural and Chemical Imaging 1(10), (2015), pp. 1. [6] Supported by the Chemical Imaging, Signature Discovery, and Analytics in Motion Initiatives at PNNL. PNNL is operated by Battelle Memorial Inst. for the US DOE; contract DE-AC05-76RL01830.

Hao, Weituo↗
DOE OSTI2017

Cryo-STEM Tomography with Inpainting

Traditionally, microscopists have worked with the Nyquist-Shannon theory of sampling, which states that to be able to reconstruct the image fully it needs to be sampled at a rate of at least twice the highest spatial frequency in the image. This sampling rate assumes that the image is sampled at regular intervals and that every pixel contains information that is crucial for the image (it even assumes that noise is important). Images in general, and especially low dose S/TEM images, contain significantly less information than can be encoded by a grid of pixels (which is why image compression works). Mathematically speaking, the image data has a low dimensional or sparse representation. Through the application of compressive sensing methods [1,2,3] this representation can be found using pre-designed measurements that are usually random for implementation simplicity. These measurements and the compressive sensing reconstruction algorithms have the added benefit of reducing noise. This reconstruction approach can be extended into higher dimensions, whereby the random sampling in each 2-D image can be extended into: a sequence of tomographic projections (i.e. tilt images); a sequence of video frames (i.e. incorporating temporal resolution and dynamics); spectral resolution (i.e. energy filtering an image to see the distribution of elements); and ptychography (i.e. sampling a full diffraction image at each location in a 2-D grid across the sample). This approach has been employed experimentally for materials science samples requiring low-dose imaging [2], and can be readily applied to biological samples. Figure 1 shows the resolution possible in a complex biological system, mouse pancreatic islet beta cells [4], when tomogram slices are reconstructed using subsampling. Reducing the number of pixels (1/6 pix and 1/3*1/3) shows minimal degradation compared to the reconstructions using all pixels (all data and 1/3 tilt). Although subsampling 1/6 of the tilts (1/6 of overall dose) degrades the reconstruction to the point that the cellular structures cannot be identified. Using 1/3 of both the pixels and the tilts provides a high quality image at 1/9 the overall dose even for this most basic and rapid demonstration of the CS methods. Figure 2 demonstrates the theoretical tomogram reconstruction quality (vertical axis) as undersampling (horizontal axis) is increased; we examined subsampling pixels and tilt-angles individually and a combined approach in which both pixels and tilts are sub-sampled. Note that subsampling pixels maintains high quality reconstructions (solid lines). Using the inpainting algorithm to obtain tomograms can automatically reduce the dose applied to the system by an order of magnitude. Perhaps the best way to understand the impact is to consider that by using inpainting (and with minimal hardware changes), a sample that can normally withstand a dose of ~10 e/Å2 can potentially be imaged with an “equivalent quality” to a dose level of 103 e/Å2. To put this in perspective, this is approaching the dose level used for the most advanced images, in terms of spatial resolution, for inorganic systems. While there are issues for biological specimens beyond dose (structural complexity being the most important one), this sampling approach allows the methods that are traditionally used for materials science to be applied to biological systems [5]. References: [1] A Stevens, H Yang, L Carin et al. Microscopy 63(1), (2014), pp. 41. [2] L Kovarik, A Stevens, A Liyu et al. Appl. Phys. Lett. 109, 164102 (2016) [3] A Stevens, L Kovarik, P Abellan et al. Adv. Structural and Chemical Imaging 1(10), (2015), pp. 1. [4] MD Guay, W Czaja, MA Aronova et al. Scientific Reports 6, 27614 (2016) [5] Supported by the Chemical Imaging, Signature Discovery, and Analytics in Motion Initiatives at PNNL. PNNL is operated by Battelle Memorial Inst. for the US DOE; contract DE-AC05-76RL01830.

Stevens, Andrew↗
DOE OSTI2017

Numerical Analysis of Experiments on Thermally Induced Dissociation of Methane Hydrates in Porous Media

Numerical simulation is essential for the prediction and evaluation of hydrocarbon reservoir performance. Numerical simulators developed for the description of the behavior of hydrates under production and the corresponding flow of fluids and heat accounting for all known processes are powerful, but they need validation through comparison to field or experimental data in order to instill confidence in their predictions. In this study, we analyze by means of numerical simulation the results of an experiment of methane hydrate dissociation by thermal stimulation in unconsolidated porous media heated through the vessel walls. The physics captured by the model include multicomponent heat and mass transfer, multiphase flow through porous media, and the phase behavior of the CH 4 + H 2 O system involved in methane hydrate formation and dissociation. The set of governing equations consists of the mass and energy conservation equations coupled with constitutive relationships, i.e., the dissolution of gas in H 2 O, relative permeability and capillary pressure models, composite thermal conductivity models, and methane hydrate phase equilibria. The model geometry describes accurately the hydrate reactor used in a recent experimental study investigating methane hydrate dissociation behavior [Chong et. al. Appl. Energy 2016, 177, 409-421]. The cumulative gas production is estimated and validated against three tests of experimental data involving different boundary temperatures, showing a good agreement between observations and numerical predictions. The predicted evolution of the spatial distributions of different phases over time shows that hydrate dissociation progresses inward from the reactor boundary to the center, methane gas accumulates to the top of the reactor because of buoyancy, and water migrates down to the bottom of the reactor because of gravity. A sharp hydrate dissociation front is predicted, and the estimated location of hydrate dissociation front suggests a linear relationship with the square root of time. A sensitivity analysis on the thermal conductivity of sand under fully saturated conditions is conducted to elucidate its effect on the gas production behavior. In addition, the energy efficiency ratio computed from the simulation of this boundary-wall heating technique varies from 14.0 to 16.2. Deviations between observations and predictions of the evolution of the temperature profile are attributed to initial heterogeneous distribution of the hydrate phase in the hydrate reactor.

42 ENGINEERING↗
DOE OSTI2017

Measurement of Fructose–Asparagine Concentrations in Human and Animal Foods

The food-borne bacterial pathogen, Salmonella enterica, can utilize fructose-asparagine (F-Asn) as the sole carbon and nitrogen source. F-Asn is the product of an Amadori rearrangement following the non-enzymatic condensation of glucose and asparagine. Heating converts F-Asn via complex Maillard reactions to a variety of molecules which contribute to the color, taste, and aroma of heated foods. Among these is acrylamide, which is present in some foods, especially in fried potato products. The F-Asn utilization pathway in Salmonella, specifically FraB, is a potential drug target because inhibition of this enzyme would lead to intoxication of Salmonella in the presence of F-Asn. However, F-Asn would need to be packaged with the FraB inhibitor, or available in human foods. To determine if there are foods that have sufficient F-Asn, we measured F-Asn concentrations in a variety of human and animal foods. The 399 pmol/mg F-Asn found in mouse chow is sufficient to intoxicate a Salmonella fraB mutant in mouse models of salmonellosis, and several human foods were found to have this concentration or higher (fresh apricots, lettuce, asparagus, and in canned peaches). Much higher concentrations (11,000 to 35,000 pmol/mg dry weight) were found in heat-dried apricots, apples, and asparagus. This report clarifies the origins of F-Asn as a nutrient source for Salmonella, and identifies foods that could be used in concert with a FraB inhibitor as a therapeutic agent for Salmonella.

Wu, Jikang↗
DOE OSTI2019

Probing Electric Double-Layer Composition via in Situ Vibrational Spectroscopy and Molecular Simulations.

At an electrode, ions and solvent accumulate to screen charge, leading to a nanometer-scale electric double layer (EDL). The EDL guides electrode passivation in batteries, while in (super)capacitors, it determines charge storage capacity. Despite its importance, quantification of the nanometer-scale and potential-dependent EDL remains a challenging problem. Here, we directly probe changes in the EDL composition with potential using in situ vibrational spectroscopy and molecular dynamics simulations for a Li-ion battery electrolyte (LiClO 4 in dimethyl carbonate). The accumulation rate of Li + ions at the negative surface and ClO 4 - ions at the positive surface from vibrational spectroscopy compares well to that predicted by simulations using a polarizable APPLE&P force field. The ion solvation shell structure and ion-pairing within the EDL differs significantly from the bulk, especially at the negative electrode, suggesting that the common rationalization of interfacial electrochemical processes in terms of bulk ion solvation should be applied with caution.

25 ENERGY STORAGE↗
DOE OSTI2017

Spin-orbit torque-driven skyrmion dynamics revealed by time-resolved X-ray microscopy

Magnetic skyrmions are topologically protected spin textures with attractive properties suitable for high-density and low-power spintronic device applications. Much effort has been dedicated to understanding the dynamical behaviours of the magnetic skyrmions. However, experimental observation of the ultrafast dynamics of this chiral magnetic texture in real space, which is the hallmark of its quasiparticle nature, has so far remained elusive. Here, we report nanosecond-dynamics of a 100nm-diameter magnetic skyrmion during a current pulse application, using a time-resolved pump-probe soft X-ray imaging technique. We demonstrate that distinct dynamic excitation states of magnetic skyrmions, triggered by current-induced spin-orbit torques, can be reliably tuned by changing the magnitude of spin-orbit torques. Our findings show that the dynamics of magnetic skyrmions can be controlled by the spin-orbit torque on the nanosecond time scale, which points to exciting opportunities for ultrafast and novel skyrmionic appl ications in the future.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Impact of gas background on XFEL single-particle imaging

Abstract Single-particle imaging (SPI) using X-ray free-electron Lasers (XFELs) offers the potential to determine protein structures at high spatial and temporal resolutions without the need for crystallization or vitrification. However, the technique faces challenges due to weak diffraction signals from single proteins and significant background scattering from gases used for sample delivery. A recent observation of a diffraction pattern from an isolated GroEL protein complex Ekeberg T et al. (Light Sci Appl 13:15, 2024.https://doi.org/10.1038/274s41377-023-01352-7) had similar numbers of signal and background photons. Ongoing efforts aim to reduce the background created by sample delivery, with one approach replacing most of the used gas with helium Yenupuri T et al. (Sci Rep 14:4401, 2024.https://doi.org/10.1038/s41598-024-54605-9). In this study, we investigate the effects of a reduced background on the resolution limits for SPI of isolated proteins under different experiment conditions. As a test case, we used GroEL, and we used experimentally derived parameters for our simulations. We observe that background significantly impacts the achievable resolution, particularly when the signal strength is comparable to the background. This is best exemplified at 6.0 keV, where a background reduction by a factor of 10 leads to a resolution improvement from 1.9 to 1.2 nm, for a dataset of$$10^4$$patterns.

Science & Technology - Other Topics↗
DOE OSTI2014

Development of an ELISA microarray assay for the sensitive and simultaneous detection of ten biodefense toxins.

Plant and microbial toxins are considered bioterrorism threat agents because of their extreme toxicity and/or ease of availability. Additionally, some of these toxins are increasingly responsible for accidental food poisonings. The current study utilized an ELISA-based protein antibody microarray for the multiplexed detection of ten biothreat toxins, botulinum neurotoxins (BoNT) A, B, C, D, E, F, ricin, shiga toxins 1 and 2 (Stx), and staphylococcus enterotoxin B (SEB), in buffer and complex biological matrices. The multiplexed assay displayed a sensitivity of 1.3 pg/mL (BoNT/A, BoNT/B, SEB, Stx-1 and Stx-2), 3.3 pg/mL (BoNT/C, BoNT/E, BoNT/F) and 8.2 pg/mL (BoNT/D, ricin). All assays demonstrated high accuracy (75-120 percent recovery) and reproducibility (most coefficients of variation < 20%). Quantification curves for the ten toxins were also evaluated in clinical samples (serum, plasma, nasal fluid, saliva, stool, and urine) and environmental samples (apple juice, milk and baby food) with overall minimal matrix effects. The multiplex assays were highly specific, with little crossreactivity observed between the selected toxin antibodies. The results demonstrate a multiplex microarray that improves current immunoassay sensitivity for biological warfare agents in buffer, clinical, and environmental samples.

Jenko, Kathryn↗
DOE OSTI2016

Effect of water on the structure of a prototype ionic liquid

The influence of water on the structure of a prototype ionic liquid (IL) 1-octyl-3-methyimidazolium tetrafluoroborate (C8mimBF4) is examined in the IL-rich regime using high-energy x-ray diffraction (HEXRD) and molecular dynamics (MD) simulations. A many-body polarizable force field APPLE&P was developed for C8mimBF4 water mixture. It predicts structure factors of pure IL and IL-water mixture in excellent agreement with the HEXRD experiments. The MD results provide detailed insights into the structural changes from the partial structure factors, 2-D projections of the simulation box and 3-D distribution functions. Water partitioning with IL and its competition with BF4- for complexing the imidazolium rings was examined. The added water molecules occupy a diffuse coordination shell around the imidazolium ring but are not present around the alkyl tail. The strong coordination of the fluorine atoms of the BF4- anions to the imidazolium ring is not significantly changed by the addition of water. These results are consistent with the very small differences in the average structure between the pure IL and the mixture.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2012

Propagation of gamma rays and production of free electrons in air

This paper is devoted to the analysis of production of free electrons in air by gamma-rays leaking from radioactive materials. A model based on the Klein-Nishina scattering theory is used to calculate scattering cross sections and approximate the electron production rate. The model includes the effects of primary gamma-quanta radiated by the source as well as that scattered in air. Comparison of the model with the mcnpx kinetic code (http://mcnpx.lanl.gov/) in a sample problem shows excellent agreement. The motivation for this research comes from the recently proposed concept of remote detection of concealed radioactive materials [V. L. Granatstein and G. S. Nusinovich, J. Appl. Phys. 108, 063304 (2010)]. The concept is based on the breakdown in air at the focal point of a high-power beam of electromagnetic waves produced by a THz gyrotron with a 10-20 {mu}s pulse. The presence of a radioactive material can greatly exceed the production rate of free electrons over the natural background rate. Additional electrons act as seeds to initiate the breakdown and create sufficiently dense plasma at the focal region. The dense plasma can then be remotely detected as an unambiguous effect of the concealed radioactive material.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2013

Charging time for dust grain on surface exposed to plasma

We consider the charging of a dust grain sitting on a surface exposed to plasma. The stochastic model of Sheridan and Hayes [Appl. Phys. Lett. 98, 091501 (2011)] is solved analytically for the charging time, which is found to be directly proportional to the square root of the electron temperature and inversely proportional to both the grain radius and plasma density.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2013

Numerical simulation of the plasma generated by the interaction high-current electron beam with Al target

The results of one dimensional particle-in-cell simulations of the dynamics of plasma generated during the interaction of a high-energy ({<=}200 keV) and high-current ({<=}15 A/cm{sup 2}) electron beam with an aluminum target are presented. The generated target plasma is low-ionized and characterized by non-Maxwellian electron energy distribution. The density and electron temperature of the plasma, which expands toward the anode at a typical velocity of {approx}10{sup 5} cm/s, does not exceed 4 Multiplication-Sign 10{sup 14} cm{sup -3} and 1 eV, respectively, which is in satisfactory agreement with the experimental results presented in W. An et al., J. Appl. Phys. 110, 093304 (2011). The results of the simulations showed also acceleration of the ions from the target plasma toward the anode by the potential of the non-compensated space charge of the electron beam. The typical velocity of these energetic ions is {approx}10{sup 8} cm/s and depends on the electron current density and energy. These ions partially compensate the space charge of the electron beam, which leads to a decrease in the depth of the potential well.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2013

Enhanced momentum delivery by electric force to ions due to collisions of ions with neutrals

Ions in partially ionized argon, nitrogen, and helium gas discharges are accelerated across a magnetic field by an applied electric field, colliding with neutrals during the acceleration. The momentum delivered by the electric force to the ions, which is equal to the momentum carried by the mixed ion-neutral flow, is found by measuring the force exerted on a balance force meter by that flow exiting the discharge. The power deposited in the ions is calculated by measuring the ion flux and the accelerating voltage. The ratio of force over power is found for the three gases, while the gas flow rates and magnetic field intensities are varied over a wide range of values, resulting in a wide range of gas pressures and applied voltages. The measurements for the three different gases confirm our previous suggestion [G. Makrinich and A. Fruchtman, Appl. Phys. Lett. 95, 181504 (2009)] that the momentum delivered to the ions for a given power is enhanced by ion-neutral collisions during the acceleration and that this enhancement is proportional to the square root of the number of ion-neutral collisions.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2013

Effects of strain on the electron effective mass in GaN and AlN

Stress is known to strongly alter the effective mass in semiconductors, changing the mobility of carriers. Transport measurements on AlGaN/GaN heterostructures indicated a large increase in mobility under tensile strain [M. Azize and T. Palacios, J. Appl. Phys. 108, 023707 (2010)]. Using first-principles methods, we calculate the variation of electron effective mass in GaN and AlN under hydrostatic and biaxial stress. Unexpected trends are found, which are explained within k·pk·p theory through a variation of the interband momentum matrix elements. The magnitude of the effective-mass reduction is too small to explain the experimentally reported increase in mobility.

36 MATERIALS SCIENCE↗
DOE OSTI2013

Frequency dependence of the electrical asymmetry effect in dual-frequency capacitively coupled discharges

Using experimental measurements complemented with particle-in-cell (PIC) simulations, we demonstrate a reduction in the electrical asymmetry effect in capacitively coupled discharges for low excitation frequencies (0.8 MHz < f<10 MHz). These results confirm PIC simulation predictions made by [I. Korolov, Z. Donko, U. Czarnetzki, and J. Schulze, J. Phys. D: Appl. Phys. 45, 465205 (2012)], where this effect was investigated for dual-frequency discharges in which the driving frequencies are phase-shifted harmonics. Because the reduction in electrical asymmetry is a sensitive function of the secondary electron emission coefficient, we are able to non-invasively estimate this coefficient as 0.035 for argon ions incident on aluminium electrodes.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2013

Breakdown-prone volume in terahertz wave beams

This study was motivated by the recently proposed concept of remote detection of concealed radioactive materials by a focused terahertz (THz) radiation [V. L. Granatstein and G. S. Nusinovich, J. Appl. Phys. 108, 063304 (2010)]. According to this concept, a high-power THz radiation should be focused in a small spot where the field intensity exceeds the breakdown threshold. In the presence of free electrons in such a breakdown-prone volume, a THz discharge will occur there. However, this volume should be so small that in the absence of ionizing sources in its vicinity the probability to have there any free electrons is low. Then, the increased breakdown rate in a series of THz pulses would indicate the presence of hidden radioactive materials in the vicinity of the focused spot. For this concept, it is important to accurately determine the breakdown-prone volume created by a focused THz radiation. This problem is analyzed in this paper, first, for the case of a single wave beam and, then, for the case of crossing wave beams of different polarizations. The problem is studied first ignoring the diffraction spread of wave beams in the vicinity of the focal plane and, then, with the account for the diffraction spreading. Then, relations between the THz wave power, the range of such a system and the breakdown-prone volume are analyzed. Finally, the effect of the atmospheric turbulence on propagation and focusing of THz wave beams in air is considered.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2013

The influence of the secondary electron induced asymmetry on the electrical asymmetry effect in capacitively coupled plasmas

In geometrically symmetric capacitive radio-frequency plasmas driven by two consecutive harmonics, a dc self-bias can be generated as a function of the phase shift between the driving frequencies via the Electrical Asymmetry Effect (EAE). Recently, the Secondary Electron Asymmetry Effect (SEAE) was discovered (Lafleur et al., J. Phys. D: Appl. Phys. 46, 135201 (2013)): unequal secondary electron emission coefficients at both electrodes were found to induce an asymmetry in single-frequency capacitive plasmas. Here, we investigate the simultaneous presence of both effects, i.e., a dual-frequency plasma driven by two consecutive harmonics with different electrode materials. We find that the superposition of the EAE and the SEAE is generally non-linear, i.e., the asymmetries generated by each individual effect do not simply add up at all phases. The control ranges of the dc self-bias and the mean ion energy can be enlarged, if both effects are combined.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗