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All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

GSAS-II (GENERAL STRUCTURE AND ALAYSIS SYSTEM-II)

GSAS-II is a comprehensive data analysis and simulation software package for determining atomistic structures from single-crystal and powder diffraction data. X-ray, neutron and electron data may be used. Constant-wavelength, time-of-flight and pink-beam sources may be employed and analyses may combine different types of data. The package is oriented towards materials characterization problems, but protein crystallography, pair-distribution function analysis, small-angle scattering and reflectometry analysis are all included. GSAS-II provides tools for indexing and solving structures from powder diffraction data, in addition to structure, data and results visualization tools

TOBY, BRIANH↗
DOE OSTI2024

Generic and ML Workloads in an HPC Datacenter: Node Energy, Job Failures, and Node-Job Analysis

HPC datacenters offer a backbone to the modern digital society. Increasingly, they run Machine Learning (ML) jobs next to generic, compute-intensive workloads, supporting science, business, and other decision-making processes. However, understanding how ML jobs impact the operation of HPC datacenters, relative to generic jobs, remains desirable but understudied. In this work, we leverage long-term operational data, collected from a national-scale production HPC datacenter, and statistically compare how ML and generic jobs can impact the performance, failures, resource utilization, and energy consumption of HPC datacenters. Our study provides key insights, e.g., ML-related power usage causes GPU nodes to run into temperature limitations, median/mean runtime and failure rates are higher for ML jobs than for generic jobs, both ML and generic jobs exhibit highly variable arrival processes and resource demands, significant amounts of energy are spent on unsuccessfully terminating jobs, and concurrent jobs tend to terminate in the same state. We open-source our cleaned-up data traces on Zenodo (https://doi. org/10.5281/zenodo.13685426), and provide our analysis toolkit as software hosted on GitHub (https://github.com/atlarge-research/2024-icpads-hpc-workload-characterization). This study offers multiple benefits for data center administrators, who can improve operational efficiency, and for researchers, who can further improve system designs, scheduling techniques, etc.

crossanalysis↗
DOE OSTI2020

Dynamic PRA-Based Estimation of PWR Coping Time Using a Surrogate Model for Accident Tolerant Fuel

In this study, we propose an interpolation-based response surface surrogate methodology to manage a large number of scenarios in dynamic probabilistic risk assessment. It adopts the shape Dynamic Time Warping algorithm to cluster the interpolation neighborhood from time series sample data. The interpolation method was adapted from Taylor Kriging to allow a reduced-order model of the Taylor series. In order to demonstrate its applicability to complex issues in risk assessment for nuclear engineering, an example risk response surface to estimate emergency core cooling system (ECCS) criteria for triplex silicon carbide (SiC) accident-tolerant fuel was constructed. The response surface was exploited to estimate the cumulative failure probability of the fuel cladding structure due to the uncertainties in operator actions and safety systems. The functional failures were assessed based on a combination of individual layer failures computed by coupling Risk Analysis Virtual Environment software with a pressurized water reactor 1000-MW(electric) RELAP5 model and the in-house fuel performance assessment module. Results showed that SiC cladding failure probability spiked less than 1 min after a large-break loss-of- coolant accident whenever the current ECCS criteria for Zircaloy-4 (Zr-4) cladding was used. However, it still provides an increased safety margin of three orders of magnitude compared to Zr-4. This positive margin could be utilized to relax active ECCS requirements by allowing deviations of up to 450 s in its actuation time. The proposed surrogate methodology generated a response surface of SiC cladding failure probability reasonably well, with a significant savings of computation time. This methodology is expected to be useful in the analysis of system response with complex uncertainty sources.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2023

Preliminary Feasibility of Printing, Microstructure Analysis and Mechanical Performance of a Down Selected Ni Alloy

This report is submitted as completion of a Milestone 3 deliverable under work package ORNL CT-23OR1304051 in support of the Advanced Materials and Manufacturing Technologies (AMMT) program. The AMMT program is aiming at the faster incorporation of new materials and manufacturing technologies into complex nuclear-related systems. An integrated approach, combining advanced characterization, high-throughput and accelerated testing, modeling and simulation including machine learning and artificial intelligence will be employed. While 316H (Fe-16-18Cr-10-14Ni-2-3Mo-0.04-0.1C) has been identified as a key alloy to be integrated into the AMMT accelerated alloy qualification approach due its relevance for many current and future nuclear energy reactors, many other alloys could be considered for the advanced fabrication of innovate high-performance nuclear components. ANL, INL, ORNL and PNNL are collaborating on identifying the most promising alloy candidates relevant for the AMMT program. A selection criteria matrix was established to evaluate the alloys considering their relative importance and technological readiness levels for nuclear energy applications, with a focus on laser powder bed fusion (LPBF). Due to the broad range of potential candidate alloys, ORNL and INL focused on Ni-based alloys, while ANL and PNNL mainly evaluated Fe-based alloys. PNNL previously published materials scorecards reports on several key alloys and this report is providing a broader overview of Ni-based candidate alloys, expending beyond alloys well-known to the nuclear community. Of particular interest are alloys that are currently commercially available in powder form due to the growing demand from other industries that have invested heavily in additive manufacturing. Among these alloys, Haynes 282 (Fe-20Cr-20Co-8Mo) was selected due to its superior strength at high temperature compared to the code-qualified alloy 617 (Ni-20-24Cr-10-15Co-8-10Mo). To assess the integration of this new alloy into the AMMT digital manufacturing framework, we performed the rapid optimization of alloy 282 printing parameters on a Renishaw 250 machine, the fabrication of sufficient materials for extensive characterization and mechanical testing both at ORNL and INL, and added the printing data into the digital platform via the Peregrine software. A detailed analysis of the LPBF 718 alloy was also conducted, with creep specimens being tested at 600-650°C and characterized by advanced electron microscopy. The alloy superior mechanical strength and great printability associated with the extensive database that has already been generated highlight the promising potential of LPBF 718 as a candidate alloy for the AMMT program. INL, ANL and PNNL have generated similar reports and all the information will be compiled into a final M2 milestone report to provide the AMMT leadership team with clear recommendations on the down selection of reactor materials, as well as establish a roadmap for the qualification of these selected alloys.

36 MATERIALS SCIENCE↗
DOE OSTI2024

LevSeq: Rapid Generation of Sequence-Function Data for Directed Evolution and Machine Learning

Sequence-function data provides valuable information about the protein functional landscape but is rarely obtained during directed evolution campaigns. Here, we present Long-read every variant Sequencing (LevSeq), a pipeline that combines a dual barcoding strategy with nanopore sequencing to rapidly generate sequence-function data for entire protein-coding genes. LevSeq integrates into existing protein engineering workflows and comes with open-source software for data analysis and visualization. The pipeline facilitates data-driven protein engineering by consolidating sequence-function data to inform directed evolution and provide the requisite data for machine learning-guided protein engineering (MLPE). LevSeq enables quality control of mutagenesis libraries prior to screening, which reduces time and resource costs. Simulation studies demonstrate LevSeq’s ability to accurately detect variants under various experimental conditions. Lastly, we show LevSeq’s utility in engineering protoglobins for new-to-nature chemistry. Widespread adoption of LevSeq and sharing of the data will enhance our understanding of protein sequence-function landscapes and empower data-driven directed evolution.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

MFANS 2024 - Formally Proving Characteristics of Cyber-Physical Systems

Cyber-physical systems (CPS) are engineered systems that rely on the smooth integration of computational algorithms and physical elements. This integration presents new challenges for verifying that systems will behave as expected. The goal of this presentation is to present current challenges and potential solutions for the formal verification of cyber-physical systems. For cyber systems, formal methods refer to systematically rigorous mathematical techniques employed in the specification, development, analysis, and verification of both software and hardware systems. Recent advancements in computer science have yielded sophisticated tools specifically designed to address challenges associated with formal methods in complex systems. These tools leverage various foundational concepts such as logic, formal languages, program semantics, type systems, type theory, and automata theory. A notable achievement in the application of formal methods is the seL4 microkernel, claimed to be the first general-purpose operating-system kernel to be verified. Its proof implies the absence of bugs and guarantees that the kernel meets specifications. For physical systems, dynamic and control theory has a history of using rigorous analytic techniques to prove functional correctness. Lyapunov, optimal, classical, modern, and robust control theories all provide rigorous mathematical methods both to analyze system performance and to design controller that can be guaranteed to meet certain objectives. Recent computational techniques like level set theory and reachability analysis provide assertions that a system's state will avoid unsafe regions. Even though success has been independently achieved for cyber systems and physical systems, the integration of such systems creates new challenges. In particular, there is an obvious discrepancy between finite-state machines and infinite-state systems, resulting in different approaches for modeling and analyzing these system. While it is possible to simulate hybrid systems, this provides only a demonstration of a performance and not proof. For hybrid systems, current formal methods and system analysis approaches typically require a workarounds to work on hybrid systems like CPS. This paper will outline the state of the art and limits of current practice for formally verifying CPS and will identify possible research directions that require attention.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Static Strain Modelling, Calibration, and Measurements for High-Temperature Wireless SAW Resonator Operation

Static strain measurements are relevant for Integrated System Health Monitoring of civil structures, aircrafts, power plants and advanced manufacturing equipment, with implications for safety, process efficiency, and maintenance costs. Wireless strain sensing is highly desirable where the presence of wires poses significant safety concerns, increases maintenance, and thus overall costs, or where they are not feasible, such as in applications which contain moving parts. This paper presents wireless interrogation of surface acoustic wave resonators (SAWRs) fabricated on langasite (LGS) along Euler angles (0°, 138.5°, 32.9°) and aimed at the detection of static strain at hightemperature (HT, above 100°C). Both commercial HT strain gauges and finite element analysis (FEA Abaqus software) were used and compared for SAWR strain calibration from room temperature (RT) to HT. In addition, this work investigated a compromise between high temperature operation vs. sensitivity based on the thickness of ceramic adhesive used. For instance, a reduction in the adhesive thickness from about 150 μm to 135 μm, resulted in a 39% increase in sensitivity at RT. It was also observed that the sensitivity dropped up to 34% from RT to 200°C. Furthermore, wireless operation, calibration, and increase in sensitivity constitute important advances in the use of LGS SAW devices to monitor static stress in high-temperature harsh environments.

42 ENGINEERING↗
DOE OSTI2025

Process Optimization and Modeling for Minerals Sustainability (PrOMMiS) v1.0.0

The U.S. Department of Energy's ("DOE") Process Optimization and Modeling for Minerals Sustainability project ("PrOMMiS Project") was initiated in 2023 to transform the national Critical Minerals and Rare Earth Elements (CM & REE) landscape, thereby supporting DOE's three enduring strategic objectives: security, economic competitiveness, and environmental responsibility. To address this initiative, the PrOMMiS Project will develop, demonstrate, and deploy an open-source, advanced system modeling, optimization, and analysis application ("PrOMMiS Software Application") that will support industry decision-makers by accelerating the scale-up of novel CM & REE technologies by de-risking the development and deployment of commercial scale processes and maximizing learning throughout the development cycle.

Beattie, KeithS [Lawrence Berkeley National Labora↗
DOE OSTI2026

BL7011 v1.0.0

This is a software package tailored to the needs of beam line 7.0.1.1 at the Advanced Light Source. It use open source packages to increase workflow efficiency around the beam line. This software package provides analysis code to deal with tasks connected to coherent x-ray measurements at the Cosmic Scattering end station.

Morley, Sophie [Lawrence Berkeley National Laborat↗
DOE OSTI2026

Multispectral UAV imagery of experimental freshwater wetlands under 5 ppt saltwater intrusion, Louisiana, 2023 and 2024

Multispectral imagery was collected using an unmanned aerial vehicle (UAV) to evaluate how freshwater vegetation responds to short-term simulated saltwater intrusion events. The purpose of this data collection was to understand how plant health changes in response to acute salinity exposure, which is increasingly relevant in coastal wetland ecosystems facing sea level rise and storm surge events, such as in coastal Louisiana. Three experimental saltwater intrusions were conducted at a salinity of approximately 5 parts per thousand (ppt) for durations of 6-days, 10-days, and 17-days. UAV flights occurred both before and after each treatment. The resulting imagery was processed using Pix4DMapper software to georeference the images and generate orthomosaics. The multispectral sensor used in this study captures reflectance in five bands: blue, green, red, red-edge, and near-infrared. The uploaded data consist of georeferenced .tif orthomosaics for each spectral band, which are compatible with GIS software for vegetation analysis. This imagery can be utilized in investigations into vegetation stress, remote sensing of freshwater wetland ecosystems, and modeling of plant response to environmental changes.

EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS↗
DOE OSTI2020

Proving the Business Case for Building Analytics

As building monitoring becomes more common, facilities teams are faced with an overwhelming amount of data. These data do not typically lead to insights or corrective actions unless they are stored, organized, analyzed, and prioritized in automated ways. Buildings are full of energy savings potential that can be uncovered with the right analysis. With analytic software applied to everyday building operations, owners are using data to their advantage and realizing cost savings through improved energy management.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2020

Leading magnetic fusion energy science into the big-and-fast data lane

To crack the code of unlimited clean energy from magnetic fusion, researchers collaborate among numerous facilities that are scattered around the globe. Probing hot fusion plasmas with sophisticated diagnostics, they routinely generate fast streams of high-dimensional time-series data. We present the adaptation of a production code-base for a plasma diagnostic to the big-and-fast data lane. The new code-base is used to stream measurements, made in Korea, into a Top-15 computing facility in the US for remote analysis. We discuss software and design choices made for this new HPC-enabled scientific workflow.

Kube, Ralph↗
DOE OSTI2022

Windfarm Operations and Maintenance cost-Benefit Analysis Tool (WOMBAT)

This report provides technical documentation and background on the newly-developed Wind Operations and Maintenance cost-Benefit Analysis Tool (WOMBAT) software. WOMBAT is an open-source model that can be used to obtain cost estimates for operations and maintenance of land-based or offshore wind power plants. The software was designed to be flexible and modular to allow for implementation of new strategies and technological innovations for wind plant maintenance. WOMBAT uses a process-based simulation approach to model day-to-day operations, repairs, and weather conditions. High-level outputs from WOMBAT, including time-based availability and annual operating costs, are found to agree with published results from other models.

17 WIND ENERGY↗
DOE OSTI2022

GeoTGo: AI/ML software for development of community geothermal resources

For effective and equitable outcomes in achieving the national goal of net-zero carbon emissions, communities must be not only included, but even lead the implementation of innovative green-energy technologies. Collaborations with communities should happen through informed decision-making, community-centered research and engagement of stakeholders at the local, state, and regional levels. Community-led research and implementation are fundamental to achieving success. These collaborations include rule makers, environmental regulators, clean energy industries, and technology researchers and developers. Unfortunately, many green infrastructure initiatives still adhere to a top-down and expert-driven process of site selection and design without awareness and acknowledgment of public engagement needs. This can lead to costly delays, including lawsuits, and ultimately less than desired or lacking outcomes as well as missed opportunities1. Geothermal, like many new technologies whose social and economic impacts are not fully understood, often cause disproportionately high adverse effects on disadvantaged communities. These effects can be related to human health, environmental, climate, and other cumulative impacts, as well as the accompanying economic challenges of these impacts. We are focusing our work on the needs of the New Mexico Native American Pueblos and Tribes (NMP&T). To address these needs, we are developing a novel web-based interactive software and user friendly interface called GeoTGO (https://geotgo.com) that provides everything that is needed for communities to better understand and develop their geothermal resources. We will bridge the gap between technology advancements and community needs by facilitating the interactions between the geothermal industry, regulators, stakeholders, and end-users. GeoTGO will merge data, software (including data analysis, text mining, artificial intelligence, and modeling tools), knowledge, expertise, and experience to provide fast processing and dissemination of the latest information about cutting-edge geothermal technologies to users and communities. More information about the project is available at https://envitrace.com/projects/geotgo.html.

15 GEOTHERMAL ENERGY↗
DOE OSTI2023

Plutonium Basket Counter Measurement Control Q3-Q4 2023

The Plutonium Basket Counter (PBC) is a spent fuel nuclear safeguards instrument that was developed to measure spent-fuel elements from MAGNOX-type research reactors and determine their plutonium content. The instrument is designed to measure fuel elements in spent fuel cooling pools through underwater operation, but it is also able to measure radiation sources in air. The PBC determines fuel plutonium content by detecting neutrons with an array of Helium-3 detectors. The electronics make use of a JSR-15 shift register for data collection and IAEA Neutron Coincidence Counting (INCC) software for data analysis. The PBC is used to determine the 240 Pu content in spent MAGNOX fuel elements grouped into basket-like bundles, thus the instrument’s name. Reactor burnup calculations can be used in conjunction with the data from the PBC to estimate the total plutonium content in the fuel.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2023

Operation of the Fast Neutron Coincidence Collar (FNCL) with a DD-Neutron Generator

For more than 30 years, the quantitative assay of the 235 U content of light water reactor fresh fuel assemblies relied on measuring coincidence neutrons from fissions induced by an Am(Li) neutron source using 3 He based detectors. The Fast Neutron Collar (FNCL) developed by the International Atomic Energy Agency (IAEA), replaces traditional 3 He proportional counters with an array of liquid scintillator detectors arranged about the fuel assembly to provide improved measurement precision and reduced sensitivity to gadolinium poison rods. The FNCL relies on Am(Li) neutron sources that are no longer commercially available. This work examines the replacement of Am(Li) sources with a commercial off the-shelf deuterium–deuterium (DD) neutron generator. In addition to mitigating supply concerns, the neutron generator offers advantages in measurement precision and potential automation of sequential passive/active neutron measurements. This report presents the initial performance results for both the integrated DD/FNCL and Am(Li)/FNCL assays of compact depleted uranium, low-enriched uranium, and highly enriched uranium standards along with an estimate of the expected performance for fresh fuel assemblies. A discussion of the design and operation of the “FNCL Analysis and Simulation Software” is also provided.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2020

2020 Multiscale Microbial Dynamics Modeling Course

The 2020 Multiscale Microbial Dynamics course is adapted from the virtual 2020 Mutliscale Microbial Dynamics Summer School that was hosted by Environmental Molecular Sciences Laboratory (EMSL), a U.S. Department of Energy (DOE) science user facility located on the Pacific Northwest National Laboratory (PNNL) campus, in collaboration with the Joint Genome Institute (JGI) and the DOE Systems Biology Knowledgebase (KBase). The course course covers how to incorporate microbial metagenomic and environmental metabolite data from watershed ecosystems into metabolic and community modeling using computational frameworks, such as KBase and PFLOTRAN. The curriculum includes lectures and software and data analysis tutorials. All materials are freely accessible to the community as part of the 2020 Microbial Dynamics Summer School Organization in KBase.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Synchrotron-based techniques for characterizing STCH water-splitting materials

Understanding the role of oxygen vacancy–induced atomic and electronic structural changes to complex metal oxides during water-splitting processes is paramount to advancing the field of solar thermochemical hydrogen production (STCH). The formulation and confirmation of a mechanism for these types of chemical reactions necessitate a multifaceted experimental approach, featuring advanced structural characterization methods. Synchrotron X-ray techniques are essential to the rapidly advancing field of STCH in part due to properties such as high brilliance, high coherence, and variable energy that provide sensitivity, resolution, and rapid data acquisition times required for the characterization of complex metal oxides during water-splitting cycles. X-ray diffraction (XRD) is commonly used for determining the structures and phase purity of new materials synthesized by solid-state techniques and monitoring the structural integrity of oxides during water-splitting processes (e.g., oxygen vacancy–induced lattice expansion). X-ray absorption spectroscopy (XAS) is an element-specific technique and is sensitive to local atomic and electronic changes encountered around metal coordination centers during redox. While in operando measurements are desirable, the experimental conditions required for such measurements (high temperatures, controlled oxygen partial pressures, and H 2 O) practically necessitate in situ measurements that do not meet all operating conditions or ex situ measurements. Here, we highlight the application of synchrotron X-ray scattering and spectroscopic techniques using both in situ and ex situ measurements, emphasizing the advantages and limitations of each method as they relate to water-splitting processes. The best practices are discussed for preparing quenched states of reduction and performing synchrotron measurements, which focus on XRD and XAS at soft (e.g., oxygen K-edge, transition metal L-edges, and lanthanide M-edges) and hard (e.g., transition metal K-edges and lanthanide L-edges) X-ray energies. The X-ray absorption spectra of these complex oxides are a convolution of multiple contributions with accurate interpretation being contingent on computational methods. The state-of-the-art methods are discussed that enable peak positions and intensities to be related to material electronic and structural properties. Through careful experimental design, these studies can elucidate complex structure–property relationships as they pertain to nonstoichiometric water splitting. A survey of modern approaches for the evaluation of water-splitting materials at synchrotron sources under various experimental conditions is provided, and available software for data analysis is discussed.

08 HYDROGEN↗