Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “parallel performance”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 361 records · Page 20

Nodal capacity expansion planning with flexible large-scale load siting

We propose explicitly incorporating large-scale load siting into a stochastic nodal power system capacity expansion planning model that concurrently co-optimizes generation, transmission, and storage expansion. The potential operational flexibility of some of these large loads is also taken into account by considering them as consisting of a set of tranches with different reliability requirements, which are modeled as a constraint on expected served energy across operational scenarios. We implement our model as a two-stage stochastic mixed-integer optimization problem with cross-scenario expectation constraints. To overcome the challenge of scalability, we build upon existing work to implement this model on a high performance computing platform and exploit scenario parallelization using an augmented Progressive Hedging Algorithm. The algorithm is implemented using the bounding features of mpisppy, which have shown to provide satisfactory provable optimality gaps despite the absence of theoretical guarantees of convergence. We test our approach and assess the value of this proactive planning framework on total system cost and reliability metrics using realistic testcases geographically assigned to San Diego and South Carolina, with datacenter and direct air capture facilities as large loads.

24 POWER TRANSMISSION AND DISTRIBUTION↗

CMaize: Simplifying inter-package modularity from the build up

There is a growing desire for inter-package modularity within the chemistry software community to reuse encapsulated code units across a variety of software packages. Most comprehensive efforts at achieving inter-package modularity will quickly run afoul of a very practical problem, being able to cohesively build the modules. Writing and maintaining build systems has long been an issue for many scientific software packages that rely on compiled languages such as C/C++. The push for inter-package modularity compounds this issue by additionally requiring binary artifacts from disparate developers to interoperate at a binary level. Thankfully, the de facto build tool for C/C++, CMake, is more than capable of supporting the myriad of edge cases that complicate writing robust build systems. Unfortunately, writing and maintaining a robust CMake build system can be a laborious endeavor because CMake provides few abstractions to aid the developer. Further, the need to significantly simplify the process of writing robust CMake-based build systems, especially in inter-package builds, motivated us to write CMaize. In addition to describing the architecture and design of CMaize, the article also demonstrates how CMaize is used in production-level software.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Substantial reduction of the anisotropy in the critical current densities J c of Ni-doped CaKFe 4 As 4 single crystals by chemical and irradiation-induced disorder

Here, we demonstrate that the anisotropy in the critical current densities, J c , of CaK(Fe 1–x Ni x ) 4 As 4 (x = 0, 0.015, 0.025, and 0.030) single crystals reduces with increasing chemical and irradiation-induced disorder. The magnetic field dependences of J c are analyzed by performing magnetization measurements with H applied parallel and perpendicular to the crystallographic c-axis. The results show that undoped crystals display large anisotropies in Jc due to an enhancement of the vortex pinning with H applied parallel to the crystallographic ab-planes. This anisotropy reduces substantially as Ni addition increases. Moreover, we found that random disorder introduced by proton irradiation enhances mainly the vortex pinning for H parallel to the c-axis. Consequently, using adequate fluencies, the vortex pinning at low temperatures in both undoped and doped samples becomes close to isotropic. These results make the CaKFe 4 As 4 system promising for applications that require isotropic J c under magnetic fields.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Modeling of carbon pellets disruption mitigation in an NSTX-U plasma

Single carbon pellet disruption mitigation simulations using M3D-C1 were conducted for an NSTX-U-like plasma to support the electromagnetic pellet injection concept (EPI). A carbon ablation model has been implemented in M3D-C1 and tested with available data. 2D simulations were conducted in order to estimate the amount of carbon needed to quench the plasma, finding that the content in a 1 mm radius vitreous carbon pellet (~3.2x10E20 atoms) would be enough if it is entirely ablated. 3D simulations were performed, scanning over pellet velocity and parallel thermal conductivity, as well as different injection directions and pellet concepts (solid pellets and shell pellets). The sensitivity of the thermal quench and other related quantities to these parameters has been evaluated. A 1 mm radius solid pellet only partially ablates at velocities of 300 m/s or higher, thus being unable to fully quench the plasma. To further enhance the ablation, approximations to an array of pellets and the shell pellet concept were also explored. 3D field line stochastization plays an important role in both quenching the center of the plasma and in heat flux losses, thus lowering the amount of carbon needed to mitigate the plasma when compared to the 2D case. This study constitutes an important step forward in `predict-first' simulations for disruption mitigation in NSTX-U and other devices, such as ITER.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Throughput Analytics of Cloud Networks

A network of virtual machines at cloud server sites connected over virtual IO connections is a flexible, easily deployable, and cost-effective alternative to a physical network infrastructure with dedicated servers connected over leased fiber lines. We study the throughput performance of such a cloud network by collecting measurements over Google Cloud infrastructure spanning multiple continents. To study its ideal performance and impact of packet losses, we utilize its emulation using dedicated servers and connection hardware emulation devices. We compare the measurements over the cloud network to those over its emulation on a testbed. We examine the throughput profiles of both networks as a function of the round trip time and their utilization-concavity coefficients, estimated using measurements for common TCP versions. The throughput profile's concave-convex shape and its coefficient are critical indicators of the network performance, qualitatively and quantitatively, respectively. The results indicate their overall agreement between the production cloud network and its emulation using dedicated connections, and a near optimal throughput performance of the former except for a few under-performing connections. Also, the number of parallel flows is found to be a dominant factor in optimizing the throughput across various conditions and TCP versions.

Phanekham, Derek↗

Adaptive Spatially Aware I/O for Multiresolution Particle Data Layouts

Large-scale simulations on nonuniform particle distributions that evolve over time are widely used in cosmology, molecular dynamics, and engineering. Such data are often saved in an unstructured format that neither preserves spatial locality nor provides metadata for accelerating spatial or attribute subset queries, leading to poor performance of visualization tasks. Furthermore, the parallel I/O strategy used typically writes a file per process or a single shared file, neither of which is portable or scalable across different HPC systems. We present a portable technique for scalable, spatially aware adaptive aggregation that preserves spatial locality in the output. We evaluate our approach on two supercomputers, Stampede2 and Summit, and demonstrate that it outperforms prior approaches at scale, achieving up to 2.5× faster writes and reads for nonuniform distributions. Furthermore, the layout written by our method is directly suitable for visual analytics, supporting low-latency reads and attribute-based filtering with little overhead.

Usher, Will↗

Sparse Binary Matrix-Vector Multiplication on Neuromorphic Computers

Neuromorphic computers offer the opportunity for low-power, efficient computation. Though they have been primarily applied to neural network tasks, there is also the opportunity to leverage the inherent characteristics of neuromorphic computers (low power, massive parallelism, collocated processing and memory) to perform non-neural network tasks. Here, we demonstrate how an approach for performing sparse binary matrix-vector multiplication on neuromorphic computers. We describe the approach, which relies on the connection between binary matrix-vector multiplication and breadth first search, and we introduce the algorithm for performing this calculation in a neuromorphic way. We validate the approach in simulation. Finally, we provide a discussion of the runtime of this algorithm and discuss where neuromorphic computers in the future may have a computational advantage when performing this computation.

Schuman, Catherine↗

Mitigating Inter-Job Interference via Process-Level Quality-of-Service

Jobs on most high-performance computing (HPC) systems share the network with other concurrently executing jobs. Network sharing leads to contention that can severely degrade performance. Here we investigate the use of Quality of Service (QoS) mechanisms to reduce the negative impacts of network contention. QoS allows users to manage resource sharing between network flows and to provide bandwidth guarantees to specific flows. Our results show that careful use of QoS reduces the impact of network contention for specific jobs, resulting in up to a 40% performance improvement. In some cases, it completely eliminates the impact of contention. It achieves these improvements with limited negative impact to other jobs; any job that experiences performance loss typically degrades less than 5%, and often much less. Our approach can help ensure that HPC machines maintain high levels of throughput as per-node compute power continues to increase faster than network bandwidth.

97 MATHEMATICS AND COMPUTING↗

Reproduced Computational Results Report for “Ginkgo: A Modern Linear Operator Algebra Framework for High Performance Computing”

The article titled “Ginkgo: A Modern Linear Operator Algebra Framework for High Performance Computing” by Anzt et al. presents a modern, linear operator centric, C++ library for sparse linear algebra. Experimental results in the article demonstrate that Ginkgo is a flexible and user-friendly framework capable of achieving high-performance on state-of-the-art GPU architectures. In this report, the Ginkgo library is installed and a subset of the experimental results are reproduced. Specifically, the experiment that shows the achieved memory bandwidth of the Ginkgo Krylov linear solvers on NVIDIA A100 and AMD MI100 GPUs is redone and the results are compared to what presented in the published article. Upon completion of the comparison, the published results are deemed reproducible.

97 MATHEMATICS AND COMPUTING↗

Accelerated Constrained Sparse Tensor Factorization on Massively Parallel Architectures

This study presents the first constrained sparse tensor factorization (cSTF) framework that optimizes and fully offloads computation to massively parallel GPU architectures, and the first performance characterization of cSTF on GPU architectures. In contrast to prior work on tensor factorization, where the matricized tensor times Khatri-Rao product (MTTKRP) is the primary performance bottleneck, our systematic analysis of the cSTF algorithm on GPUs reveals that adding constraints creates an additional bottleneck in the update operation for many real-world sparse tensors. While executing the update operation on the GPU brings significant speedup over its CPU counterpart, it remains a significant bottleneck. To further accelerate the update operation, we propose cuADMM, a new update algorithm that leverages algorithmic and code optimization strategies to minimize both computation and data movement on GPUs. As a result, our framework delivers significantly improved performance compared to prior state-of-the-art. On 10 real-world sparse tensors, our framework achieves geometric mean speedup of 5.1 × (max 41.59 ×) and 7.01 × (max 58.05 ×) on the NIVIDA A100 and H100 GPUs, respectively, over the state-of-the-art SPLATT library running on a 26-core Intel Ice Lake Xeon CPU.

Soh, Yongseok↗

A fast particle-based approach for calibrating a 3-D model of the Antarctic ice sheet

We consider the scientifically challenging and policy-relevant task of understanding the past and projecting the future dynamics of the Antarctic ice sheet. The Antarctic ice sheet has shown a highly nonlinear threshold response to past climate forcings. Triggering such a threshold response through anthropogenic greenhouse gas emissions would drive drastic and potentially fast sea level rise with important implications for coastal flood risks. Previous studies have combined information from ice sheet models and observations to calibrate model parameters. These studies have broken important new ground but have either adopted simple ice sheet models or have limited the number of parameters to allow for the use of more complex models. These limitations are largely due to the computational challenges posed by calibration as models become more computationally intensive or when the number of parameters increases. Here, we propose a method to alleviate this problem: a fast sequential Monte Carlo method that takes advantage of the massive parallelization afforded by modern high-performance computing systems. We use simulated examples to demonstrate how our sample-based approach provides accurate approximations to the posterior distributions of the calibrated parameters. The drastic reduction in computational times enables us to provide new insights into important scientific questions, for example, the impact of Pliocene era data and prior parameter information on sea level projections. These studies would be computationally prohibitive with other computational approaches for calibration such as Markov chain Monte Carlo or emulation-based methods. We also find considerable differences in the distributions of sea level projections when we account for a larger number of uncertain parameters. For example, based on the same ice sheet model and data set, the 99th percentile of the Antarctic ice sheet contribution to sea level rise in 2300 increases from 6.5 m to 13.1 m when we increase the number of calibrated parameters from three to 11. With previous calibration methods, it would be challenging to go beyond five parameters. Here, this work provides an important next step toward improving the uncertainty quantification of complex, computationally intensive and decision-relevant models.

54 ENVIRONMENTAL SCIENCES↗

High-dimensional discrete Fourier transform gates with a quantum frequency processor

The discrete Fourier transform (DFT) is of fundamental interest in photonic quantum information, yet the ability to scale it to high dimensions depends heavily on the physical encoding, with practical recipes lacking in emerging platforms such as frequency bins. In this article, we show that d -point frequency-bin DFTs can be realized with a fixed three-component quantum frequency processor (QFP), simply by adding to the electro-optic modulation signals one radio-frequency harmonic per each incremental increase in d . We verify gate fidelity F W > 0.9997 and success probability P W > 0.965 up to d = 10 in numerical simulations, and experimentally implement the solution for d = 3, utilizing measurements with parallel DFTs to quantify entanglement and perform tomography of multiple two-photon frequency-bin states. Our results furnish new opportunities for high-dimensional frequency-bin protocols in quantum communications and networking.

97 MATHEMATICS AND COMPUTING↗

Studies of Quark Transport and Hadronization in Nuclei

In this project, we conducted the first measurement of di‑hadron azimuthal correlations in deep inelastic scattering (DIS) off nuclei using the CLAS detector at Jefferson Lab. Using 5 GeV electron‑beam data collected on deuterium, carbon, iron, and lead targets, we extracted di‑pion correlation functions over a broad kinematic range. The results show a monotonic broadening of the correlation peak with increasing nuclear mass, along with pronounced dependencies on the pions’ kinematics. Separately, we implemented an algorithm based on the Kalman filter that achieved the first complete alignment of the CLAS12 central tracking system. In parallel, we developed simulations, algorithms, and performance studies that informed the conceptual designs of the forward hadronic calorimeter Insert and the Zero Degree Calorimeter, both of which are now included in the ePIC detector baseline for the forthcoming Electron Ion Collider.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Supplemental Microalgal DHA and Astaxanthin Affect Astaxanthin Metabolism and Redox Status of Juvenile Rainbow Trout

Microalgal docosahexaenoic acid (DHA) and astaxanthin (AST) may substitute for fish oil and synthetic AST in aquafeeds. This study explored the effects and mechanisms of those substitutions on AST metabolism and redox status of rainbow trout fed plant protein meal (PM)- or fishmeal (FM)-based diets. Two parallel experiments (PM vs. FM) were performed with 612 juvenile rainbow trout for 16 weeks as a 2 × 3 factorial arrangement of treatments with two AST sources (synthetic (SA) vs. microalgal (AA), at 80 mg/kg) and three levels (0, 50, and 100%) of fish oil substitutions with DHA-rich microalgae. The fish oil substitutions exhibit main effects (p < 0.05) and/or interactive effects (p < 0.05) with the source of AST on AST deposition, malondialdehyde and glutathione concentrations, and mRNA levels and activities of major redox enzymes (glutathione reductase (GR), glutathione peroxidase (GPX), glutathione S-transferase (GST), and superoxide dismutase (SOD)) in the muscle and liver of trout fed both diet series. The AST source produced only differences in tissue AST deposition (p < 0.05) and number of metabolites. In conclusion, the substitutions of fish oil by the DHA-rich microalgae exerted more impacts than those of SA by AA on redox status and functional expression of antioxidant enzymes in the tissues of rainbow trout.

59 BASIC BIOLOGICAL SCIENCES↗

Dynamics of Laterally Propagating Flames in X-Ray Bursts. I. Burning Front Structure

We investigate the structure of laterally propagating flames through the highly stratified burning layer in an X-ray burst. Two-dimensional hydrodynamics simulations of flame propagation are performed through a rotating plane-parallel atmosphere, exploring the structure of the flame. We discuss the approximations needed to capture the length and timescales at play in an X-ray burst and describe the flame acceleration observed. Finally, our studies complement other multidimensional studies of burning in X-ray bursts.

79 ASTRONOMY AND ASTROPHYSICS↗

Cholesky-based experimental design for Gaussian process and kernel-based emulation and calibration.

Gaussian processes and other kernel-based methods are used extensively to construct approximations of multivariate data sets. The accuracy of these approximations is dependent on the data used. This paper presents a computationally efficient algorithm to greedily select training samples that minimize the weighted L p error of kernel-based approximations for a given number of data. The method successively generates nested samples, with the goal of minimizing the error in high probability regions of densities specified by users. The algorithm presented is extremely simple and can be implemented using existing pivoted Cholesky factorization methods. Training samples are generated in batches which allows training data to be evaluated (labeled) in parallel. For smooth kernels, the algorithm performs comparably with the greedy integrated variance design but has significantly lower complexity. Numerical experiments demonstrate the efficacy of the approach for bounded, unbounded, multi-modal and non-tensor product densities. We also show how to use the proposed algorithm to efficiently generate surrogates for inferring unknown model parameters from data using Bayesian inference.

97 MATHEMATICS AND COMPUTING↗

BOXKIT

SF-23-067 BoxKit is a library that provides building blocks to parallelize and scale data science, high performance computing, and machine learning applications for block-structured datasets. Spatial data from simulations and experiments can be accessed and managed using tools available in this library when working with more data analysis oriented packages like SciKit (https://github.com/scikit-learn/scikit-learn) and FlowNet (https://github.com/NVIDIA/flownet2-pytorch)

DHRUV, AKASH↗

Computing for the DUNE Long-Baseline Neutrino Oscillation Experiment

This is a talk given at Computers in High Energy Physics in Adelaide, South Australia, Australia in November 2019. It is partially intended to explain the context of DUNE Computing for computing specialists. The DUNE collaboration consists of over 180 institutions from 33 countries. The experiment is in preparation now with commissioning of the first 10kT fiducial volume Liquid Argon TPC expected over the period 2025-2028 and a long data taking run with 4 modules expected from 2029 and beyond. An active prototyping program is already in place with a short test beam run with a 700T, 15,360 channel prototype of single-phase readout at the neutrino platform at CERN in late 2018 and tests of a similar sized dual-phase detector scheduled for mid-2019. The 2018 test beam run was a valuable live test of our computing model. The detector produced raw data at rates of up to ~2GB/s. These data were stored at full rate on tape at CERN and Fermilab and replicated at sites in the UK and Czech Republic. In total 1.2 PB of raw data from beam and cosmic triggers were produced and reconstructed during the six week test beam run. Baseline predictions for the full DUNE detector data, starting in the late 2020's are 30-60 PB of raw data per year. In contrast to traditional HEP computational problems, DUNE's Liquid Argon TPC data consist of simple but very large (many GB) 2D data objects which share many characteristics with astrophysical images. This presents opportunities to use advances in machine learning and pattern recognition as a frontier user of High Performance Computing facilities capable of massively parallel processing.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗