pre-postprocess elastic constants 2021
One scripts generates input and submission script files for third party DFT software VASP to compute elastic constants. The other script postprocesses the results from VASP.
Blaschke, Daniel↗
SEARCH · Engineering Papers
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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From 2D to 4D: a containerized workflow and browser to explore dynamic chromatin architecture
Background Characterizing the physical organization of the genome is essential for understanding long-range gene regulation, chromatin compartmentalization, and epigenetic accessibility. Hi-C experiments generate two-dimensional (2D) genome-wide contact maps of chromatin interactions by capturing the spatial proximity between genomic loci, which reveal interaction frequencies but lack the spatial resolution needed to interpret the three-dimensional (3D) genome structure(s). Emerging evidence suggests that epigenetic regulation is closely linked to 3D genome architecture, and that structural changes over time (4D) drive key biological processes in development, disease, and environmental response. Thus, integrating 3D structure with functional data is critical for a more complete understanding of genome regulation. Previous work, most notably the 4DHiC chromosome modeling framework, has shown that physical multi-dimensional modeling approaches rooted in polymer physics and molecular dynamics can resolve these structures at biologically meaningful resolutions by integrating temporal Hi-C data with physical constraints to uncover dynamic chromosome reorganization. Thus, molecular dynamics simulations, constrained by Hi-C contact matrices, can resolve fine-scale structural changes and reveal functionally significant transitions in chromatin conformation. Results Herein, we present the 4D Genome Browser Workflow (4DGBWorkflow) and the 4D Genome Browser (4DGB). The algorithm is based on the 4DHiC method, and the containerized tool is an end-to-end workflow that can transform, filter, and view 4D epigenomics and chromatin datasets, allowing non-specialists to apply three-dimensional modeling principles to diverse datasets and experimental conditions. The software executes on a laptop running macOS, Linux or Windows. From input Hi-C files (.hic), the 4DGBWorkflow produces 3D reconstructions of chromosomes, integrates the reconstruction with track data (e.g., epigenetic marks, transcriptome profiles), and provides comparative visualization of the results in a single workflow. Conclusions The 4DGBWorkflow and 4D Genome Browser are open-source tools for comparative analysis and visualization of 4D chromosome datasets, including chromatin architecture and epigenomic signals. Automatic integration of Hi-C data with molecular dynamics democratizes the construction of time resolved 3D genome structures, simplifying complex simulations and data integration schemes.
3D Genome Browser↗
Monte Carlo Hauser-Feshbach computer code system to model nuclear reactions: YAHFC
A computer program framework, YAHFC, to model low-energy nuclear reactions is presented. The framework allows for reactions with incident particles ranging from protons/neutrons to alphas and is designed to address reactions that ultimately lead to the formation of compound nuclear systems that then decay statistically as outlined in concepts of Hauser and Feshbach. Additionally, instead of a reaction, it is also possible to model the decay of a nuclear system with an initial excitation and population. The code models nuclear decays with a Monte Carlo process that tracks the decay of each state. This allows for an exact representation of the spectra for all emitted particles in each of the final exit channels and the possibility of generating reaction data for simulation purposes. The program is interfaced with the optical model code system FRESCOX to calculate transmission coefficients as well as the effects of coupled channels and other direct excitations via the distorted wave Born approximation (DWBA). Modules are included to account for nuclear processes such as width corrections, pre-equilibrium emission, and fission. The program is controlled by a series of input commands and while a set of input parameters exists for each projectile and target, the input commands allow for complete control over each input parameter. Extensive data files are produced and a program is provided that converts YAHFC data files into nuclear data library entries in the generalized nuclear data structure (GNDS).
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
Code Coverage Status of the ARC Code RCT
The Argonne Reactor Code (ARC) software system supports users in their fast reactor design goals by providing neutronic, thermal-hydraulic, and structural analysis capabilities. REBUS plays a pivotal role in the ARC system as the primary fuel cycle analysis capability for fast reactor problems. Over its 60 year history, ARC software usage with REBUS has been applied to numerous fast and thermal spectrum reactor analysis projects with good to excellent comparison against experiments. The RCT code is a later addition and uses the REBUS restart files to define its input. The RCT code was built to provide pin depletion details on EBR-II models and thus many features of RCT were specifically tailored to the needs of EBR-II models. Additional approximations were invoked which are likely only valid for the EBR-II reactor and the particular fuel management that was done for it. The purpose of the present work is to identify a set of test problems for RCT and assess the code coverage for those test problems. The goal is to document what parts of the existing RCT code are touched by the set of test problems and which are not. Because no detailed verification work has been done on RCT, the existing regression testing suite was chosen for the code coverage assessment. The code coverage analysis of RCT was performed with the Code Coverage Tool of the Intel Fortran compiler which requires modifications to the compilation of RCT. The detailed coverage tables are given for each part of RCT. As will be discussed and shown, some parts of the RCT capability that are known to be used by the EBR-II analysis work are not tested by the regression testing suite. These aspects should be resolved before major source code changes are taken for the RCT software. Because REBUS and DIF3D are not subroutines of RCT, the coverage changes in both of those codes is not altered by RCT. The same is true for all of the modules of DIF3D that are used by RCT such as SYSLIB and SEGLIB.
22 GENERAL STUDIES OF NUCLEAR REACTORS↗
A fast Monte Carlo cell-by-cell simulation for radiobiological effects in targeted radionuclide therapy using pre-calculated single-particle track standard DNA damage data
Introduction: We developed a new method that drastically speeds up radiobiological Monte Carlo radiation-track-structure (MC-RTS) calculations on a cell-by-cell basis. Methods: The technique is based on random sampling and superposition of single-particle track (SPT) standard DNA damage (SDD) files from a “pre-calculated” data library, constructed using the RTS code TOPAS-nBio, with “time stamps” manually added to incorporate dose-rate effects. This time-stamped SDD file can then be input into MEDRAS, a mechanistic kinetic model that calculates various radiation-induced biological endpoints, such as DNA double-strand breaks (DSBs), misrepairs and chromosomal aberrations, and cell death. As a benchmark validation of the approach, we calculated the predicted energy-dependent DSB yield and the ratio of direct-to-total DNA damage, both of which agreed with published in vitro experimental data. We subsequently applied the method to perform a superfast cell-by-cell simulation of an experimental in vitro system consisting of neuroendocrine tumor cells uniformly incubated with 177 Lu. Results and discussion: The results for residual DSBs, both at 24 and 48 h post-irradiation, are in line with the published literature values. Our work serves as a proof-of-concept demonstration of the feasibility of a cost-effective “in silico clonogenic cell survival assay” for the computational design and development of radiopharmaceuticals and novel radiotherapy treatments more generally.
62 RADIOLOGY AND NUCLEAR MEDICINE↗
Package Data for CERF-Data Centers
This dataset contains sample input 100m resolution raster files for running the CERF-DC python package (see https://github.com/IMMM-SFA/cerf_data_centers) at the state level across the CONUS. Due to data availability constraints, some of the items included in this dataset are proxies or assumptions for siting factors used in the model. These are individually noted in the item descriptions and can be exchanged with more detailed information upon availability. Data Descriptions The following raster files are included in the data download: state_siting_region.tif — State areas identified by state FIPS code composite_siting_suitability.tif — Value of 1 indicates suitable siting location, 0 otherwise. The following areas are excluded from siting: Areas within 300m of a federal airport runway Waterbodies Areas with slope >16% Areas susceptible to sinkholes High coastal or inland flood risk areas Local, state, and federal parks, leisure areas, and cemeteries Areas >2 km away from electric substations Areas >5 km away from a municipal water supplier service area Areas >2 km away from high-speed fiber provider service territory Protected Areas Database of the United States (PAD-US) areas Railroads, major roadways, and minor roadways Military areas and training grounds Developed lands Areas >0.8 km (0.5 miles) from developed lands land_value_dollar_per_sqft.tif — USD per square foot (sqft) derived from USDA $/acre land cost personal_property_tax_rate.tif — Personal property tax rate by state. Uses an assumed 0.0125 personal property tax rate for states with personal property tax, 0 for states without personal property tax. real_property_tax_rate.tif — Real property tax rate. Based on county level residential real estate property tax rates. sales_tax_rate.tif — Sales tax rate by state. mechanical_cooling_fraction.tif — Fraction of year (values between 0 and 1, inclusive) that the data center would be cooled through mechanical processes based on local water stress and humidity levels. water_cooling_fraction.tif — Fraction of year (values between 0 and 1, inclusive) that the data center would be cooled through evaporative (water cooled) processes based on local water stress and humidity levels. distance_to_substation.tif — Distance to nearest substation in hundreds of meters (i.e., value of 1 equals a distance of 100m). Offshore areas have a value of 0. industrial_electricity_rates_dollar_per_kwh.tif — USD/kWh industrial electricity rates. Represents the average industrial rate across all utilities that operate within a given county. Values are derived from the US Utility Rate Database. commercial_electricity_rates_dollar_per_kwh.tif — USD/kWh commercial electricity rates. Represents the average commercial rate across all utilities that operate within a given county. Values are derived from the US Utility Rate Database. data_center_market_locations.tif — Grid cells with positive values represent the centroid of existing data center market clusters. The value of non-zero grid cells represents the number of data centers in the market cluster. All other grid cells have a value of 0. Geospatial Metadata CRS: Albers Equal Area Conic (ESRI:102003) Extent: -2415585.0000000023283064,-1441981.2605773280374706 : 2384414.9999999976716936,1708018.7394226719625294 Dimensions: X: 48000 Y: 31500 Bands: 1 Origin: -2415585.0000000023283064,1708018.7394226719625294 Pixel Size: 100,-100 Acknowledgment IM3 is a multi-institutional effort led by Pacific Northwest National Laboratory and supported by the U.S. Department of Energy's Office of Science as part of research in MultiSector Dynamics, Earth and Environmental Systems Modeling Program. License This data is made available under a CCBY4.0 License Disclaimer This material was prepared as an account of work sponsored by an agency of the United States Government. Neither the United States Government nor the United States Department of Energy, nor the Contractor, nor any or their employees, nor any jurisdiction or organization that has cooperated in the development of these materials, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness or any information, apparatus, product, software, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof, or Battelle Memorial Institute. The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. PACIFIC NORTHWEST NATIONAL LABORATORYoperated byBATTELLEfor theUNITED STATES DEPARTMENT OF ENERGYunder Contract DE-AC05-76RL01830
Mongird, Kendall↗
Package Data for CERF-Data Centers
This dataset contains sample input 100m resolution raster files for running the CERF-DC python package (see https://github.com/IMMM-SFA/cerf_data_centers) at the state level across the CONUS. Due to data availability constraints, some of the items included in this dataset are proxies or assumptions for siting factors used in the model. These are individually noted in the item descriptions and can be exchanged with more detailed information upon availability. Data Descriptions The following raster files are included in the data download: state_siting_region.tif — State areas identified by state FIPS code composite_siting_suitability.tif — Value of 1 indicates suitable siting location, 0 otherwise. The following areas are excluded from siting: Areas within 300 m of a federal airport runway or within an airport area boundary Waterbodies Areas with slope >16% Areas susceptible to sinkholes High coastal or inland flood risk areas Local, state, and federal parks, leisure areas, and cemeteries Areas >2 km away from electric substations Areas >5 km away from a municipal water supplier service area Areas >2 km away from high-speed fiber provider service territory USGS Protected Areas Database of the United States (PAD-US) GAP status 1, 2, or 3 areas US National Parks Wetlands USFWS critical habitats BIA land areas Railroads, major roadways, and minor roadways Military areas and training grounds NLCD developed lands Areas >0.8 km (0.5 miles) from NLCD developed lands land_value_dollar_per_sqft.tif — USD per square foot (sqft) derived from USDA $/acre land cost personal_property_tax_rate.tif — Personal property tax rate by state. Uses an assumed 0.0125 personal property tax rate for states with personal property tax, 0 for states without personal property tax. real_property_tax_rate.tif — Real property tax rate. Based on county level residential real estate property tax rates. sales_tax_rate.tif — Sales tax rate by state. mechanical_cooling_fraction.tif — Fraction of year (values between 0 and 1, inclusive) that the data center would be cooled through mechanical processes based on local water stress and humidity levels. water_cooling_fraction.tif — Fraction of year (values between 0 and 1, inclusive) that the data center would be cooled through evaporative (water cooled) processes based on local water stress and humidity levels. distance_to_substation.tif — Distance to nearest substation in hundreds of meters (i.e., value of 1 equals a distance of 100m). Offshore areas have a value of 0. industrial_electricity_rates_dollar_per_kwh.tif — USD/kWh industrial electricity rates. Represents the average industrial rate across all utilities that operate within a given county. Values are derived from the US Utility Rate Database. commercial_electricity_rates_dollar_per_kwh.tif — USD/kWh commercial electricity rates. Represents the average commercial rate across all utilities that operate within a given county. Values are derived from the US Utility Rate Database. data_center_market_locations.tif — Grid cells with positive values represent the centroid of existing data center market clusters. The value of non-zero grid cells represents the number of data centers in the market cluster. All other grid cells have a value of 0. Geospatial Metadata CRS: Albers Equal Area Conic (ESRI:102003) Extent: -2415585.0000000023283064,-1441981.2605773280374706 : 2384414.9999999976716936,1708018.7394226719625294 Dimensions: X: 48000 Y: 31500 Bands: 1 Origin: -2415585.0000000023283064,1708018.7394226719625294 Pixel Size: 100,-100 Acknowledgment IM3 is a multi-institutional effort led by Pacific Northwest National Laboratory and supported by the U.S. Department of Energy's Office of Science as part of research in MultiSector Dynamics, Earth and Environmental Systems Modeling Program. License This data is made available under a CCBY4.0 License Disclaimer This material was prepared as an account of work sponsored by an agency of the United States Government. Neither the United States Government nor the United States Department of Energy, nor the Contractor, nor any or their employees, nor any jurisdiction or organization that has cooperated in the development of these materials, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness or any information, apparatus, product, software, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof, or Battelle Memorial Institute. The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. PACIFIC NORTHWEST NATIONAL LABORATORYoperated byBATTELLEfor theUNITED STATES DEPARTMENT OF ENERGYunder Contract DE-AC05-76RL01830
Mongird, Kendall↗
Modernization of ORIGEN Library Creation in the SCALE Computer Code
The modernization of SCALE features has been a target for recent SCALE releases. ORIGEN, the activation and depletion code in SCALE, is one such legacy code that has been targeted for modernization. A part of these modernization efforts has been to develop capabilities within ORIGEN to directly read ENDF-formatted data files. In addition, the input format for the COUPLE library creation utility was rewritten to a format more accessible to newer SCALE users. Finally, the ability of COUPLE to create ORIGEN libraries without sublibrary data has been added.KEYWORDS: ORIGEN, depletion, SCALE, API
Hart, Shane↗
Optode Images, and Dissolved Oxygen Data from Sand and Sediment Flow-through Column Experiments associated with: "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns"
This data package is associated with the publication "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns" submitted to Frontiers in Water (Garayburu-Caruso et al., 2022). This work presents a novel application of planar optode technology to sediment columns that allows the study of well-constrained flow fields without the need to assume completely homogeneous flow. We introduce a flow-through column with the interior coated in an oxygen sensing film and a series of sampling ports as a unique tool capable of capturing changes in dissolved oxygen (DO) at high frequency (10 s) and spatial (< 1 mm) resolution across the length of a column. In addition, we provide custom scripts that allows image processing steps to be automated and consistently reproduced over a variety of experimental conditions. This dataset is comprised of four folders (1) 01_Riverbed_Sediment_Experiment, (2) 02_Sand_Experiment, (3) 01_Riverbed_Sediment_Raw_Images, and (4) 02_Sand_Experiment_Raw_Images. 01_Riverbed_Sediment_Experiment contains (1) a subfolder with csv files that contain statistical parameters from the linear regressions applied to each optode image, (2) a subfolder with csv files from DO data measured by in-line sensors, (3) a subfolder with csv files containing column and injection specific input parameters for the image processing script, and (4) a subfolder with scripts used to process the images and create associated figures. 02_Sand_Experiment contains (1) a subfolder with csv files containing column and injection-specific input parameters for the image processing script, and (2) a subfolder with scripts used to process the images and create associated figures. 01_Riverbed_Sediment_Raw_Images (spited in 3 parts due to size) contains a subfolder with raw red, and green images from the optode system during the MilliQ Injection, Vanillin Injection or Vanillin + Sampling Injection respectively. 02_Sand_Experiment_Raw_Images contains a subfolder with raw red, and green images from the optode system. Outside of the main folders there is a csv containing file-level metadata and a csv data dictionary defining column headers for all csv files contained in the data package.
54 ENVIRONMENTAL SCIENCES↗
Data, model inputs, and analysis scripts associated with a manuscript on stream intermittency controls across spatial scales in Pacific Northwest watersheds
NOTE: The manuscript associated with this data package is currently in review. The data may be revised based on reviewer feedback. Upon manuscript acceptance, this data package will be updated with the final dataset and additional metadata. This data package is associated with the manuscript "Hydroclimatic Memory and Watershed Template Shape Stream Intermittency: Multi-scale Attribution Using Process-based Simulation and Explainable ML" by Niroula et al. (2026), submitted to Water Resources Research (WRR). The study investigates the dominant controls on stream intermittency across local, reach, and watershed scales using a coupled process-based simulation and explainable machine-learning framework. Long-term daily simulations from the Advanced Terrestrial Simulator (ATS) were used to generate wetness states and ponded-depth responses over river-corridor cells. These ATS outputs were then aggregated across scales and used to train XGBoost (eXtreme Gradient Boosting) models. SHAP (SHapley Additive exPlanations) was applied to quantify the relative importance of hydroclimatic forcings, watershed template attributes, and antecedent-memory effects in shaping intermittency behavior. The analysis is carried out for three contrasting Pacific Northwest watersheds: Oak Creek (OCW), American River Watershed (ARW), and H.J. Andrews (HJA). Across these testbeds, the package contains ATS-ready watershed inputs, ATS run configuration and selected output files, model-evaluation data products, intermittency-analysis datasets, machine-learning target-feature tables, SHAP outputs, and notebooks used to organize, analyze, and visualize results. At a high level, the package documents a workflow in which ATS provides the physically based simulation backbone and explainable machine learning is used as a post-processing attribution tool. The contents are intended to support interpretation of the manuscript figures and results, provide context for how intermittency metrics were generated at multiple scales, and preserve the key artifacts needed to understand and reuse the analysis workflow. The package contains a high-level directory summary file (`summary.txt`) and four main content folders (1) `evaluation_plots` contains evaluation figures and supporting evaluation datasets; (2) `intermittency_plots` contains intermittency-focused analysis notebook and prepared datasets; (3) `ml-training-and-shap_values_plots` contains ML training inputs, SHAP outputs, and figure-generation notebooks; and (4) `watershed_mesh_and_ats_input` contains ATS model setup materials, forcing inputs, geometry, and selected run files. More specifically, the `evaluation_plots` folder contains the notebook used for ATS evaluation plotting and site-specific evaluation datasets. These include evapotranspiration and water-balance products for three watersheds, as well as an Oak Creek field-measurement discharge file. The `intermittency_plots` folder contains the notebook used for intermittency analysis and the prepared datasets used to analyze intermittent and non-intermittent wetness behavior across the study watersheds. The `ml-training-and-shap_values_plots` folder contains notebooks and outputs for the machine-learning and explainability workflow. This includes the main XGBoost and SHAP notebook(s), a beeswarm plotting notebook, target-feature tables for machine-learning training, SHAP summary tables, and per-sample SHAP value archives. The `watershed_mesh_and_ats_input` folder contains ATS-related watershed inputs and supporting materials. This includes mesh and shape products, ATS-readable LAI and meteorological forcing inputs, selected ATS spinup and transient-run files, and a watershed workflow example notebook. Subdirectories are organized by watershed where applicable.All files are .cpg (codepage files), .csv (comma-separated values), .dbf (database files), .exo (Exodus mesh format), .h5 (HDF5 format), .ipynb (Jupyter notebooks), .pkl (Python pickle), .prj (projection files), .sh (shell scripts), .shp (shapefile geometry), .shx (shapefile index), .txt (text files), or .xml (markup data).
Advanced Terrestrial Simulator↗
Dataset for 'Ombadi et al. (2023). A warming-induced reduction in snow fraction amplifies rainfall extremes, Nature'
This package contains the main codes, sample input data and main result files to reproduce the analysis and results presented in the article: “Ombadi et al. (2023), A warming-induced reduction in snow fraction amplifies rainfall extremes, Nature”. The folder consists of the following: (1) “Raw data”: a folder that contains sample input data which is used in some of the codes for demonstration purposes. It also contains data that was not pre-processed such as Elevation data; (2) “Results”: this folder contains files of the main results presented in the paper including: “Annual-Max-Series”, “Change-rainfall-extremes”, “Change-snow-fraction”, “Warming levels_By scenario_model_year” and “Masks”. Description of these folders is detailed in the "Readme.rtf" file; (3) Python jupyter notebooks (Extract_Annual Max Series (AMS).ipynb, Elevation-dependent amplification of rainfall extremes.ipynb, Sensitivity_to_global_warming.ipynb) demonstrate the main steps of analysis. Further description of those notebooks is provided in the "Readme.rtf" file; (4) R code for extreme value analysis (Extreme_Value_Analysis.R). The sample and pre-processed dataset in "Raw data" is obtained from publicly available repositories of CMIP6 and ERA5 datasets; see Methods for more detail. This research was supported by Office of Science, Office of Biological and Environmental Research of the US Department of Energy under contract no. DE-AC02-05CH11231 for the CASCADE Scientific Focus (funded by the Regional and Global Model Analysis Program area within the Earth and Environmental Systems Modeling Program) and the iNAIADS Early Career Research Project (funded by the Environmental Systems Science program).
54 ENVIRONMENTAL SCIENCES↗
Leaf gas exchange data, Nov 2018 and May 2019, Daintree Rainforest, Australia
This data package contains leaf gas exchange data for 11 canopy tree species in the control and drought treatments at the Daintree Rainforest Observatory in Queensland, Australia (AU-DRO) with the purpose of testing for differences in gas exchange between treatments. Data were collected at the end of the dry season (November 2018) and end of the wet season (May 2019). Using a canopy crane, large branches (>1 m) were collected from the top of the canopy and immediately placed in a bucket of water, upon which the LI-6800 leaf chamber was clamped onto a recently mature leaf with minimal herbivory. Measurements were recorded every 3 seconds for 3 minutes total. The species included in the dataset are: Castanospermum australe, Cleistanthus myrianthus, Cryptocarya mackinnoniana, Dysoxylum papuanum, Elaeocarpus angustifolius (Elaeocarpus grandis), Endiandra microneura, Mallotus paniculatus, Myristica globosa, Rockinghamia angustifolia, Synima cordierorum, Syzygium spp. The two data files included are: 1. LICOR_Data_AU_DRO_2019_GasEx.csv (a compilation of individual LICOR output files, with correction of user input errors such as incorrect species spelling) 2. ESS_DIVE_Data_AU_DRO_2019_GasEx.csv (selected variables and converted units from LICOR_Data_AU_DRO_2019_GasEx.csv to follow the standard gas exchange reporting format from Ely et al. 2021 Ecological Informatics). The metadata files included are: (3) ESS_DIVE_Metadata_AU_DRO_2019_GasEx.xlsx (4) File_Submission_Metadata_AU_DRP_2019_GasEx.xlsx (5) E-Field_Log_AU_DRO_2019_GasEx.xlsx (6) Data_Column_Description_AU_DRO_2019_GasEx.xlsx.
54 ENVIRONMENTAL SCIENCES↗
Mass Property Calculator
A mass property calculator has been developed to compute the moment of inertia properties of an assemblage of parts that make up a system. The calculator can take input from spreadsheets or Creo mass property files or it can be interfaced with Phoenix Integration Model Center. The input must include the centroidal moments of inertia of each part with respect to its local coordinates, the location of the centroid of each part in the system coordinates and the Euler angles needed to rotate from the part coordinates to the system coordinates. The output includes the system total mass, centroid and mass moment of inertia properties. The input/output capabilities allow the calculator to interface with external optimizers. In addition to describing the calculator, this document serves as its user's manual. The up-to-date version of the calculator can be found in the Git repository https://cee-gitlab.sandia.gov/cj?ete/mass-properties-calculator.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Hydropower Capacity Factor Trends & Analytics for the United States
This data repository contains all code, input data, and data generated for Turner et al. (2024)—“Hydropower capacity factors trending down in the United States”. File descriptions: – hydro-cf-trends-inputs.zip: Full set of input data used in this study, organized for direct entry into “/data” directory of hydro-cf-trends data processing pipeline. – hydro-cf-trends.zip: Full data processing pipeline, coded using the R {targets} framework. This is a snapshot release (v1.0) of the code repository stored at https://code.ornl.gov/turnersw/hydro-cf-trends/. – hydro-cf-trends-results.zip: Provides all dam level results required to reproduce results and graphics in Turner et al. (2024). Dams are identified by the “complxID” (root of the hydropower plant ID in the Existing Hydropower Assets Database, inherited from HILARRI). Results include: • dam_CF_trends.csv: Table of long-term trends in annualized capacity factors for 610 dams and modeled annualized capacity factors for 362 modeled dams (naturalized and assimilated flows). • dam_annualized_CF_gen.csv: Annualized time series of the following variables for each of 610 hydropower dams with nameplate > 5MW – Reported nameplate capacity (MW) – Implied maximum annual generation (MWh) – Reported net generation (MWh) – Computed annual capacity factor – Modeled annual capacity factor (362 modeled plants only)
13 HYDRO ENERGY↗
FY21 Progress Report: SRNL Analysis of ICCWR LCM and WAMS data for Corrosion and Cracking
The development of algorithms for machine learning and data analysis for the 3013 Surveillance Program is a collaborative effort by the Savannah River National Laboratory (SRNL) and the University of South Carolina (USC). For corrosion detection, Laser Confocal Microscope (LCM) or Wide Area 3D Measurement System (WAMS) data is extracted from large binary files, with software written to convert the data to physical attributes (e.g., height, color and grayscale values; all as functions of a location in a plane projection). A user-friendly Matlab Graphical User Interface (GUI) that reads data from either LCM or WAMS files was developed to integrate input data with software developed for processing and evaluation. The GUI can selectively download binary data, interrogate data attributes, label data, flag significant features, execute Machine Learning (ML) algorithms, output parameters for trained ML algorithms, report ML model accuracy with respect to labeled data, and generate graphical representations for various analyses. Features can be called out by user-specified thresholds, manual labeling or machine learning algorithms when they have been completed. The ability to rapidly label data is important because of the volume of data required for training machine learning algorithms. The GUI has the flexibility to allow addition of improved ML algorithms, methods for data visualization, and statistical computations. Statistical analyses via the GUI include areas of pits within a defined range of pit depths, correlations between Red-Green-Blue (RGB) or grayscale intensity and relative surface height, covariances between values associated with features, and feature histograms. The development of supervised machine learning algorithms, however, has been hindered by a lack of training data. The machine learning algorithms for crack identification are being refined but require improvements to the true positive rate for crack detection. This shortcoming is an artifact of the limited training data currently available, perhaps more so than the structure of the neural networks. At present, the best results are had from a consensus over an ensemble of randomly generated Deep Neural Network (DNN) or Convolutional Neural Network (CNN) algorithms. Although the consensus accuracy method has yielded optimum true positive and true negative rates in excess of 80%, additional validation testing is necessary. In addition to the suite of LCM data that was initially used, and which represents the majority of the work presented in this report, WAMS image data was also reviewed at a preliminary level. The review included a comparison between image resolution and dynamic range for each method. WAMS (ZON file) image data was found to have a pixel pitch of 3.69μm compared to 1 μm for the LCM (vk4 file) data, which implies a lower resolution for the WAMS images. Conversely, the ratio of dynamic range of the WAMS data to the LCM data was approximately 41:20 for height data, suggesting that information from WAMS should more accurately determine the depth of pits. At present, the significance of the greater dynamic range of the WAMS data relative to the LCM data has not yet been evaluated.
12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
Data and scripts associated with a manuscript on a meta-analysis synthesizing stream biogeochemical response to wildfires across space and time (v2)
This data package is associated with the publication “Catchment characteristics modulate the influence of wildfires on nitrate and dissolved organic carbon in lotic systems across space and time: A meta-analysis” submitted to Global Biogeochemical Cycles (Cavaiani et al. 2025). This study uses meta-analytical techniques to evaluate the effect of wildfire on in-stream responses in burned and unburned watersheds. The study aims to provide additional insight into the range of responses and net influences that wildfires have on hydro-biogeochemistry across broad spatial scales, burn extents, and the persistence of water-quality change. This study compiles data and metadata from 18 total publications that includes 1) surface water geochemistry data (dissolved organic carbon; nitrate), 2) climate classifications, 3) year of the wildfire, 4) the time lag between when the fire occurred and when the sampling occurred, and 5) study design of the publication. In total, this meta-analysis draws data that spans 8 climate guilds, 3 biomes, 62 watersheds, and 20 unique wildfires. See Sites_meta_data.csv for citations of the papers used in this meta-analysis. All R scripts and the associated data can also be found on GitHub at This data package was originally published in March 2024. It was updated in April 2025 (v2; new and modified files). See the change history section in the readme for more details. This data package contains five primary folders that include the following: (1) inputs; (2) output for analysis; (3) initial plots; (4) R scripts; and (5) GIS data. The data package also contains a data dictionary (dd) that provides column header definitions and a file-level metadata (flmd) file that describes every file. The “inputs” folder contains a list of all publications identified during the formal web search and an indication of whether each publication was included in the final analysis. Additionally, it includes site-level metadata, catchment characteristics, and GIS data for all publications included in the final analysis. The “Output_for_analysis” folder contains all data frames and figures generated from each R script used for additional data analysis. The “initial_plots” folder includes all exploratory figures that will be included in a supplemental and figures that will be submitted with the manuscript for publication. The “R_scripts” folder contains the scripts that perform all the data manipulations, statistical analyses, and plots. The “gis_data” folder includes shape files for each fire included in this meta-analysis. This data package contains the following file types: csv, pdf, jpeg, cpg, dbf, prj, shp, shp.ea.iso.xml, shp.iso.xml, shx.
54 ENVIRONMENTAL SCIENCES↗
MEASUR - Manufacturing Energy Assessment Software for Utility Reduction
MEASUR your energy savings with the free DOE MEASUR software The Department of Energy (DOE), with Oak Ridge National Laboratory (ORNL), released version 1.0 of their energy efficiency software tool MEASUR (Manufacturing Energy Assessment Software for Utility Reduction). MEASUR has been available for several years as a beta version, being tested by industry experts and real users, and will continue to be updated and improved in the coming years. It is an integrated suite of tools to aid manufacturers in improving the efficiency of energy systems and equipment within a plant, including motors, pumps, fans, process heating, steam, and compressed air. Additionally, there are modules for wastewater energy analysis and to help perform energy treasure hunts. Several calculators are also included, allowing users to independently perform smaller calculations and analyses (such as estimating pump head, performing a fan traverse analysis, estimating waste heat recovery potential, and cataloging compressed air leaks). The MEASUR modules are based on previous DOE software tools that have been used by industry since the early 2000s (such as MotorMaster, AirMaster+, PSAT, PHAST, and FSAT). The original tools only ran on Windows operating systems, and by Windows 10, most of them were inoperable. DOE started their energy efficiency software tool revitalization effort in 2016, first with PSAT (for pumps), then began to integrate the other tools and expand their functionality and utility. The new MEASUR suite provides an extensively more user-friendly, modern, and versatile set of tools. All the assessment modules and most of the calculators have several visual components and graphs and detailed help text for every user input. To help reach international users, the tool utilizes Google translate and users can easily change unit systems, even converting existing user inputs if desired. The assessment files can be organized within the internal file system and easily shared to other users, regardless of their operating system. The entire suite is free, open-source, and can be downloaded on Windows, Mac, or Linux operating systems.
Accawi, Gina [Oak Ridge National Lab. (ORNL), Oak ↗
Code Description for "Brief Communication: Monitoring snow depth using small, cheap, and easy-to-deploy ground surface temperature sensors"
Temporally continuous snow depth estimates are vital for understanding changing snow patterns and impacts on permafrost in the Arctic. We train a random forest machine learning model to predict snow depth from variability in ground surface temperature. To our knowledge, this is the first time that small ground surface temperature sensors have been used to estimate snow depth. The model performs well at sites where the model was trained and at pan-arctic evaluation sites (RMSE <= 0.15 m). Small temperature sensors are cheap and easy-to-deploy, so this technique enables spatially distributed and temporally continuous snowpack monitoring to an extent previously infeasible. The model is flexible and can be applied to datasets retroactively to retrieve snow depth estimates at additional sites. This code package includes a *.joblib file of the trained random forest model and a *.ipynb file showing how to clean input data, train the random forest model, and apply the model.
Bachand, Claire↗