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Challenges and Advances in Information Extraction from Scientific Literature: a Review

Scientific articles have long been the primary means of disseminating scientific discoveries. Over the centuries, valuable data and potentially groundbreaking insights have been collected and buried deep in the mountain of publications. In materials engineering, such data are spread across technical handbooks specification sheets, journal articles, and laboratory notebooks in myriad formats. Extracting information from papers on a large scale has been a tedious and time-consuming job to which few researchers have wanted to devote their limited time and effort, yet is an activity that is essential for modern data-driven design practices. However, in recent years, significant progress has been made by the computer science community on techniques for automated information extraction from free text. Yet, transformative application of these techniques to scientific literature remains elusive-due not to a lack of interest or effort but to technical and logistical challenges. Using the challenges in the materials science literature as a driving motivation, we review the gaps between state-of-the-art information extraction methods and the practical application of such methods to scientific texts, and offer a comprehensive overview of work that can be undertaken to close these gaps.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Membrane-based solvent extraction for the recovery of rare earths from phosphate mining process streams

This study reports on the capture of rare earth elements (REEs) from phosphate industry process streams, including phosphoric acid (PA) sludge and phosphogypsum (PG), using a membrane solvent extraction (MSX) process. While MSX has been proven effective for a relatively concentrated feed, its effectiveness for dilute REEs solutions remains unexplored. Investigated PA-sludge and PG particles contain total REEs concentrations of ∼1100 and ∼320 ppm, respectively. Acid leaching, implemented to dissolve the REEs, significantly dilutes the REEs concentration to ∼210 ppm for PA-sludge leachate and ∼60 ppm for PG leachate. These low concentrations, compounded by the higher levels of non-REE ions and radioactive species, uranium (U) and thorium (Th), poses challenges to the MSX process. Here, we demonstrated that N,N,N′,N′-tetraoctyl-diglycolamide (TODGA) selectively binds REEs from a >3 M nitric-acid leachate while effectively rejecting U and Th. Concentrations of light REEs in strip solution were doubled compared to the feed, while heavy REEs were preferentially extracted. Furthermore, >99% purity gypsum, free of U and Th, was precipitated during the acid leaching process, aiding separation by removing significant amounts of non-REEs species (e.g., calcium) prior to the MSX process. Molecular simulations support the experimental data, suggesting preferential separation of heavy over light REEs. Based on these results, a cost-effective integrated process including pretreatment, acid leaching, MSX, and wastewater treatment is proposed for the co-recovery of REEs, phosphoric acid, gypsum, and U. This study shows MSX as a technically and economically feasible process for the recovery of REEs from low-concentration process streams, offering advantages over conventional solvent extraction.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Deep eutectic solvents in separations: Methods of preparation, polarity, and applications in extractions and capillary electrochromatography

Deep eutectic solvents (DESs) have emerged as alternatives to conventional organic solvents and ionic liquids (ILs). Their tunable and designer physio-chemical properties, low cost, and ease of preparation make them attractive solvent systems for use in extractions and additives to chromatographic separations. However, due to the diverse range of hydrogen bond acceptors and donors that comprise DESs, choosing the appropriate solvent for separations can be challenging. This work discusses all methods of DES preparation and details their advantages and disadvantages. Since polarity is an important aspect in their use in separations, the classification of DESs based on the betaine dye and nile red scales as well as Kamlet-Taft parameters is also discussed. Finally, a summary of applications of DESs in various extraction processes (phenolics, fuels, metals, proteins, carbohydrates), solid-phase extraction, solid-phase microextraction, as well as capillary electrochromatography is provided.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Chitin extracted from various biomass sources: It's not the same

Here this study demonstrates the use of ionic liquids to successfully extract chitin from different biomass sources and the utilization of the resulting chitins to prepare monofilament fibers. Chitin was extracted from five different biomass sources (processed and raw shrimp shell, crab and lobster shell, and fly larvae) using the ionic liquid (IL) 1-ethyl-3-methylimidazolium acetate ([C 2 mim][OAc]). While processed and raw shrimp shell yielded chitin of high purity in quantitative yield, crab and lobster shell resulted in lower yields of chitin. Fly larva provided chitin severely contaminated with proteins. Each extracted chitin was re-dissolved in the same IL and dry wet jet spun into monofilament fibers to determine any trends in mechanical properties vs. biomass source. The concentration needed to spin fibers was not consistent and had to be adjusted individually for each type of chitin obtained. Chitin from raw shrimp shell produced the strongest fibers, while the chitin from the crab and lobster produced weaker fibers, although, the latter were twice as elastic. The use of fly larvae led to the weakest and least elastic fibers.

60 APPLIED LIFE SCIENCES↗

A review of rare earth elements and yttrium in coal ash: Content, modes of occurrences, combustion behavior, and extraction methods

Rare earth elements and yttrium (REY) have attracted considerable attention over the last decade because of their vital roles in clean energy, consumer product, national defense and security applications, among other uses. Due to the retention of REY during coal burning, coal combustion ash is considered as potential alternative sources for REY. Understanding the content, speciation, retention and/or transformation behavior of REY during coal combustion not only expands our knowledge of the combustion behavior of the trace elements in coal, but also provides basis for modeling REY partitioning during coal combustion and for developing economically viable REY recovery technologies. This review makes a critical summary of recent progress in the study of REY in coal ash. The contents and the extraction potentials of REY in coal ash derived from 15 major coal-producing countries worldwide were summarized and evaluated. Various analytical methods for determining REY bulk contents and speciation, together with the solid sample pretreatment, analytical accuracy and precision, advantages and disadvantages were summarized and compared. Modern analytical approaches combined indirect methods (e.g., sequential extraction) shed light on the physical distribution, mineralogy, and the chemical state of REY in coal ash. Three types of REY occurrences in coal ash, including Si-Al glassy association, discrete minerals or compounds, and organic association (bound with unburned carbon) were defined in the review. The glassy association can be further divided into REY minerals closely bound to glass phases and dispersed throughout the glassy structure. REY partitioning in various emission streams, the size distribution, and their enrichment behavior in coal ash were discussed. Additionally, thermal behavior and transformation of various REY forms in coal during combustion process, including organic-associated REY, REY phosphates, REY carbonates, clay-bound REY and among others were summarized. Two possible retention mechanisms of REY by aluminosilicate glass at boiler temperature were proposed: the incorporation of the individual REY phases into the glass as inclusions and the diffusion of REY phases throughout Si-Al glass structures in the melting process. Feed coal mineral types, mineral-mineral associations, boiler conditions, and other factors control the retention process. After coal combustion, the speciation of REY in fly ash may be modified by the reactions of REY phases with flue gas components. Further, an overview of REY transformation mechanisms during coal combustion was deeply discussed. Finally, current extraction techniques for REY recovery from coal combustion ash were introduced. Future outlooks and research problems were also identified.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Evaluation of the Impact of Concentration and Extraction Methods on the Targeted Sequencing of Human Viruses from Wastewater

Sequencing human viruses in wastewater is challenging due to their low abundance compared to the total microbial background. This study compared the impact of four virus concentration/extraction methods (Innovaprep, Nanotrap, Promega, and Solids extraction) on probe-capture enrichment for human viruses followed by sequencing. Different concentration/extraction methods yielded distinct virus profiles. Innovaprep ultrafiltration (following solids removal) had the highest sequencing sensitivity and richness, resulting in the successful assembly of several near-complete human virus genomes. However, it was less sensitive in detecting SARS-CoV-2 by digital polymerase chain reaction (dPCR) compared to Promega and Nanotrap. Across all preparation methods, astroviruses and polyomaviruses were the most highly abundant human viruses, and SARS-CoV-2 was rare. These findings suggest that sequencing success can be increased using methods that reduce nontarget nucleic acids in the extract, though the absolute concentration of total extracted nucleic acid, as indicated by Qubit, and targeted viruses, as indicated by dPCR, may not be directly related to targeted sequencing performance. Further, using broadly targeted sequencing panels may capture viral diversity but risks losing signals for specific low-abundance viruses. Overall, this study highlights the importance of aligning wet lab and bioinformatic methods with specific goals when employing probe-capture enrichment for human virus sequencing from wastewater.

59 BASIC BIOLOGICAL SCIENCES↗

Benchmarking Concentration and Extraction Methods for Wastewater-Based Surveillance of Eight Human Respiratory Viruses: Implications for Rapid Application to Novel Pathogens

To provide early warning and support a rapid response to a novel virus through wastewater surveillance, it would be ideal to understand in advance which concentration and extraction methods are likely to be effective for dPCR-based methods, depending on virus characteristics. In this study, we spiked raw wastewater samples with eight human respiratory viruses and processed them with four methods that concentrate and/or extract nucleic acids from both liquid and solid fractions (Promega, Nanotrap, and InnovaPrep) or only the solid fraction of wastewater (Solids). Our findings provide encouraging evidence that all four methods combined with dPCR could detect an emerging virus in wastewater, although they differed in sensitivity. The pattern of recovery efficiency for adenoviruses, coronaviruses, and influenza A viruses was consistent across methods, with Promega producing higher median recovery efficiencies, while distinct patterns were observed for coxsackieviruses. We also normalized the concentration data with two endogenous fecal indicators, PMMoV and Carjivirus (formerly crAssphage). We found that normalization could reduce method-associated differences if the indicator exhibited a recovery pattern similar to that of the target virus. These findings can guide the selection of concentration and extraction methods for wastewater monitoring based on the properties of target viruses, thus enhancing pandemic preparedness.

Biological and medical sciences↗

Direct Extraction of Uranium Oxides with N,N -Di(2-ethylhexyl)isobutyramide

The direct extraction of uranium from voloxidized nuclear fuel into an organic solvent offers several potential advantages over conventional hydrometallurgical reprocessing, including reducing the reprocessing plant footprint, providing an initial degree of decontamination from fission products, and minimizing the amount of secondary waste from nitric acid. In this work, the direct extraction of uranium oxides into 1.5 M N,N-di(2-ethylhexyl)isobutyramide (DEHiBA) in n-dodecane is examined. UV–vis spectra and distribution ratios of HNO 2 in 1.5 M DEHiBA as well as the equilibrium organic phase H 2 O concentrations in HNO 3 -loaded 1.5 M DEHiBA are also reported. Hypothesized reaction stoichiometries for the direct extraction of uranium from UO 2 , α-U 3 O 8 , and ε-UO 3 are verified through analysis of organic-phase U, HNO 2 , and HNO 3 concentrations after dissolution. Water generated by the dissolution results in the formation of a separate aqueous phase, which will need to be accounted for in future flowsheet design.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Design strategies for ion-sieving charge mosaic membranes toward sustainable lithium extraction

Membrane-based technologies are essential for realizing sustainable ion-sieving processes such as lithium extraction. Much effort was devoted to designing new membrane materials, whereas the effect of charge distribution has been largely overlooked. Here, we filled this knowledge gap by providing a quantitative transport model for selective ion diffusion through a charge mosaic membrane (CMM). Composed of alternating regions of Li-selective ceramic and anion-selective polymeric materials, CMMs offered the unique advantage of promoting the transport of both Li + and anions while blocking other cations. As a result, the membrane achieved a high Li/Mg selectivity of 62 and a high permeation rate of 59 mmol·m −2 ·h −1 at a low feeding concentration of 30 mM, without any external driving force. Systematical experiments revealed the influence of brine Mg/Li ratio and membrane ceramic/polymer ratio on the overall extraction rate, which was consistent with the prediction of our transport model. In conclusion, the model developed in this work not only presented the design strategies of CMMs for Li extraction but also provided guidance for the development of other ion-sieving processes in general.

25 ENERGY STORAGE↗

Boundary-Aware Adversarial Learning Domain Adaption and Active Learning for Cross-Sensor Building Extraction

The use of convolutional neural networks (CNNs) for building extraction from remote sensing images has been widely studied and many public datasets have been made available for accelerating development of these CNN models. Yet adapting pretrained models at scale in real-world scenarios remains a challenging task. The main barrier is that certain new labels are still needed to compensate for domain shifting between the labeled data and new images that potentially cover new geographic locations or that are from a different sensor. In this article, we propose to add informatively labeled samples from a new image pool under the paradigm of active learning. To select the most useful samples based on model uncertainty, we first tackle the problem of uncalibrated uncertainty estimation due to distribution shifting by adapting feature extractors with boundary-based adversarial learning. Calibrated uncertainty is used as the query criterion in the active learning process, where the most uncertain samples are selected for annotation and included for model retraining. The proposed workflow was tested with three data pairs in which each workflow represents a scenario often encountered in real-world applications, including adapting pretrained models to new images collected with different sensors or to new geographic areas where appearances and types of buildings are very different. Compared to several baselines, including random sampling, temperature scaling (a well-known uncertainty calibration technique), different query strategies, and active domain adaptation methods, the proposed workflow shows that strategically querying a smaller set of samples for labeling achieves comparable or better building extraction performance. The proposed method reduces the number of labeled samples required to achieve sufficient model accuracy, thus significantly reducing hundreds of person-hours for labeled data creation. In addition, we include a few considerations when deploying this workflow in a GPU cluster that can be easily adapted to achieve operational building extraction model retraining.

97 MATHEMATICS AND COMPUTING↗

Selective hydrothermal extraction of lanthanides: Mimicking natural ore-forming processes [Slides]

Rare Earth Elements (REE) consumption in the US was 20,000 metric ton in 2018. China controls 97% of the global REE market. The aims for new technology are to 1. Avoid investing in extraction of cheap LREE, extract M/HREE only → increase the value of the intermediate/final product, 2. Exclude extraction and concentration of U and Th → avoid investment in rad remediation, and 3. Maximize environmental friendliness of the technology. Hints from nature can aid in achieving these amis.

01 COAL, LIGNITE, AND PEAT↗

National Alliance for Water Innovation (NAWI) Resource Extraction Sector Technology Roadmap 2021

The National Alliance for Water Innovation (NAWI) is a research consortium formed to accelerate transformative research in desalination and treatment to lower the cost and energy required to produce clean water from nontraditional water sources and realize a circular water economy. NAWI’s goal is to enable the manufacturing of energy-efficient desalination technologies in the United States at a lower cost with the same (or higher) quality and reduced environmental impact for 90 percent of nontraditional water sources within the next 10 years. The nontraditional source waters of interest include brackish water; seawater; produced and extracted water; power, mining, industrial, municipal, and agricultural waste waters. When these desalination and treatment technologies are fully developed and utilized, they will be able to contribute to the water needs for many existing end-use sectors. NAWI has identified five end-use sectors that are critical to the U.S. economy for further exploration: Power, Resource Extraction, Industry, Municipal, and Agriculture (PRIMA). This Resource Extraction Sector roadmap aims to advance desalination and treatment of nontraditional source waters for beneficial use in public water supplies by identifying research and development (R&D) opportunities that help overcome existing treatment challenges. Under NAWI’s vision, the transition from a linear to a circular water economy with nontraditional source waters will be achieved by advancing desalination and reuse technologies in six key areas: Autonomous operations, Precision separations, Resilient treatment and transport, Intensified brine management, Modular membrane systems, and Electrified treatment systems, collectively known as the A-PRIME areas. Technological advances in these different areas will enable nontraditional source waters to achieve pipe parity with traditional supplies.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Extraction, Scrub, and Strip Test Results for the IBC BOBCalix Solvent Samples

A second vendor for solvent extraction components has been chosen for use at the Salt Waste Processing Facility (SWPF). IBC Advanced Technologies (IBC) has provided samples of their BOBCalix, as well as complete solvent. These samples were tested for quality assurance purposes to ensure their use at SWPF is acceptable. Two Extraction, Scrub, and Strip (ESS) tests were performed on solvent samples from IBC. The purpose of testing these samples was to determine if the solvents are displaying the correct extraction and stripping behavior with cesium.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Economic Extraction and Recovery of REEs and Production of Clean Value-Added Products from Low-Rank Coal Fly Ash

TechConnect World Innovation Conference & Expo, Washington, DC, June 13–15, 2022. The University of North Dakota (UND) Energy & Environmental Research Center (EERC) teamed with Pacific Northwest National Laboratory; the North Dakota Industrial Commission Lignite Research Program; and commercial partners Basin Electric Power Cooperative, Great River Energy, and Southern Company to execute a Cooperative Agreement funded by the U.S. Department of Energy’s National Energy Technology Laboratory (NETL) focused on identifying unique pathways and pretreatments to extract rare-earth elements (REEs) from low-rank coal (LRC) ash in a more economical and environmentally benign manner than current methods. By focusing on minimizing process steps and consumptive use of extraction solutions, a tunable, economically viable process for REE extraction from LRC ash was developed.

01 COAL, LIGNITE, AND PEAT↗

Extracting Critical Metals from Authentic Bauxite Residue

Securing domestic sources of critical minerals (CM) is paramount to ensuring a robust and self-sustaining technology infrastructure. Utilizing untapped non-conventional sources, like acid mine drainage, coal ash, bauxite residue/red mud, and more is an emerging approach that addresses this national concern while identifying new value-added pathways originating from waste streams. Red mud is a byproduct of the Bayer process that produces alumina and contains a wealth of CM – 50 µg/g Ga, 2.9 mg/g total rare earth elements plus yttrium, 12 mg/g Mn, 58 mg/g Al, and others. About 170 MM tonnes of red mud are co-produced annually alongside the 142 MM tonnes of alumina generated, highlighting the abundancy of this feedstock. In this work, different strategies were explored for extracting CM from authentic bauxite residue that involve thermal heating, microwave heating, and sonication all with different acids and buffers. CM recovery was then explored one step further by testing the adsorption of the extracted metals onto NETL’s Multi-functional Sorbent Technology (MUST). Microwave treatment of red mud proved the most effective CM extraction, whereas sonication was less desirable due to scale-up concerns. Successful recovery of CM from this leachate with MUST supports further studies toward optimizing the overall process.

bauxite residue↗

A Study of Large Scale Power Extraction and Insertion on Turbofan Performance and Stability

This paper describes the effects of turbofan power extraction and insertion (augmentation) on engine performance and stability. The purpose of this paper is to present how power augmentation affects a dual spool gas turbine engine cycle where the engine will also be required to provide thrust. The goals for the paper are to describe effective limits of power augmentation and offer strategies, utilizing spool choice and variable geometries, to maximize augmentation effect. While Analysis is general two potential uses are explored: Power extraction for electrified aircraft propulsion purposes. And, Power insertion for thrust assist. Results of the paper show it is possible to extract over 20% (at 85% max thrust) and gain roughly 12% of maximum thrust through power insertion.

Gas Turbine Engines↗

A Study of Large Scale Power Extraction and Insertion on Turbofan Performance and Stability

This describes the effects of turbofan power extraction and insertion (augmentation) on engine performance and stability. The purpose of this paper is to present how power augmentation affects a dual spool gas turbine engine cycle where the engine will also be required to provide thrust. The goals for the paper are to describe effective limits of power augmentation and offer strategies, utilizing spool choice and variable geometries, to maximize augmentation effect. While Analysis is general, two potential uses are explored: Power extraction for electrified aircraft propulsion and power insertion for thrust assist. Results of the paper show it is possible to extract over 20% (at 85% max thrust) and gain roughly 12% of maximum thrust through power insertion.

Gas Turbine engines↗

A Study of Large-Scale Power Extraction and Insertion on Turbofan Performance and Stability

This paper describes the effects of turbofan power extraction and insertion (augmentation) on engine performance and stability. The purpose of this paper is to present how power augmentation affects a dual spool gas turbine engine cycle where the engine will also be required to provide thrust. The goals for the paper are to describe effective limits of power augmentation and offer strategies, utilizing spool choice and variable geometries, to maximize augmentation effect. While Analysis is general, two potential uses are explored: Power extraction for electrified aircraft propulsion and power insertion for thrust assist. Results of the paper show it is possible to extract over 20% (at 85% max thrust) and gain roughly 12% of maximum thrust through power insertion.

Gas Turbine engines↗