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DOE OSTI2021

Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes

Host-associated microbial communities (microbiomes) play critical roles in human, animal, and plant health and development. However, interactions between the host, members of the microbiome, and invading pathogens are in most cases still poorly understood. Such interactions are multidimensional and can alter the taxonomic composition and/or the functional metabolic activities of the microbiome in response to disease or treatment conditions. For example, after 2 days of antibiotic treatment, the mouse gut microbiome is altered and more susceptible to invasion by the pathogen Clostridioides difficile. Studies of these multidimensional interactions have been fueled by the ability to use high-throughput sequencing of phylogenetic marker genes to profile microbial community composition and shotgun metagenomics to profile functional potential. However, many protein-coding genes predicted from metagenomes are not necessarily expressed under a given condition, and thus, it is difficult to assess the activities and functional interactions in microbial communities based on DNA sequencing data alone. The physiological and pathological processes expressed in these communities under specific conditions are better reflected by the abundances of transcripts or proteins. In this Pearl, we provide a brief introduction to metaproteomics, which is a tool for the large-scale analysis of proteins in microbiomes that allows researchers to address a diversity of questions related to functions and interactions in microbiomes. The term “metaproteomics” was first used in 2004 for “the large-scale characterization of the entire protein complement of environmental microbiota at a given point in time”, and since then, a large array of metaproteomics approaches have been developed. Our objective in this Pearl is to highlight what we feel are 5 essential elements to be considered for a metaproteomics research campaign and to introduce nonexpert readers to the topic without going into too much technical detail.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Performance Limits for Maritime Wide-Area Search (MWAS) Radar

One of the earliest applications for radar was to search for and find maritime vessels on the open sea. Proper design and operation of an airborne Maritime Wide Area Search (MWAS) radar requires an understanding of system performance characteristics and limitations, and furthermore understanding the trades amongst a large number of interdependent system parameters. This report identifies and explores those characteristics and limits, and how they depend on hardware system parameters and environmental conditions. Ultimately, this leads to a characterization of parameters that offer optimum performance for the overall MWAS radar system. While the information herein is not new to the literature, its collection into a single report hopes to offer some value in reducing the 'seek time'. Acknowledgements This report was funded by General Atomics Aeronautical Systems, Inc. (GA-ASI) Mission Systems under Cooperative Research and Development Agreement (CRADA) SC08/01749 between Sandia National Laboratories and GA-ASI. General Atomics Aeronautical Systems, Inc. (GA-ASI), an affiliate of privately-held General Atomics, is a leading manufacturer of Remotely Piloted Aircraft (RPA) systems, radars, and electro-optic and related mission systems, including the Predator/Gray Eagle-series and Lynx Multi-mode Radar. -

42 ENGINEERING↗

DOE OSTI2020

Uncovering novel RNA viruses in permafrost

Arctic soils (including permafrost) contain an untapped reservoir of microbial life, including viruses, that are trapped in a frozen state of low metabolic activity. However, as permafrost thaws, they can be revived and pose potential risks to human health and ecosystem stability. The current COVID-19 pandemic has highlighted the urgency of identifying potential pathogen reservoirs which may be activated under the impacts of climate change, as well as understanding the role of RNA viruses in dynamic environments. Here, we applied a new computational workflow (Wu et al. submitted) to identify and analyze RNA viruses from de-novo assemblies representing a total of 33 metatranscriptomes collected from four parallel transects across a range of fluctuating environmental gradients. This study provides the first characterization of RNA viral diversity within a permafrost ecosystem.

58 GEOSCIENCES↗

DOE OSTI2023

Coupling Thermal-Hydraulics with Reactor Pressure Vessel Fracture Models

Because of the importance of maintaining the integrity of the reactor pressure vessel (RPV) in light-water reactors, significant effort has been devoted over the last several decades to understand the potential failure mechanisms, characterize how material properties evolve due to environmental conditions, and develop tools to assess the probability of fracture in aged RPVs during potential transient events. One important aspect of this problem that has not yet been fully addressed is the effects of nonuniform cooling on the RPV inner wall due to the way low-temperature water injected into the primary coolant system is distributed within the RPV during potential loss-of-coolant accident transients. Colder temperatures are expected in the regions near the inlets, causing a “cold-plume” effect. Rapid cooling of the RPV wall increases the likelihood of fracture initiation, and localized cooling due to cold-plume effects could potentially exacerbate this problem. The Grizzly code can perform a three-dimensional simulation of the RPV thermomechanical response as well as the probabilistic assessment of fracture for a population of pre-existing flaws, which is necessary to account for spatial variations in coolant temperature. This report documents a first effort to couple Grizzly RPV fracture models with computational fluid dynamics models performed using the Cardinal code, which allows for a realistic representation of the temperature distribution. This report demonstrates this coupling approach on two test cases: a simplified proof-of-concept scenario and a realistic small-break loss-of-coolant accident scenario. In both cases, the effects of the spatially varying temperature are evident; although, because the small-break loss-of-coolant accident scenario was far from challenging the RPV’s margins, it is still inconclusive how important cold-plume effects are in realistic accident scenarios. However, this effort represents an important step toward performing realistic analyses to determine to what extent spatially nonuniform cooling might affect RPV integrity under more aggressive accident scenarios.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2024

New Matrix Framework to Determine Carbon Storage Technical Viability

Carbon storage is an integral component of reducing CO2 emissions. Research over the past two decades has developed workflows for volume assessments and economic project feasibility, providing necessary and useful tools to progress geologic carbon storage (GCS) projects. These workflows and assessments have focused primarily on determining the in-situ storage resource based on geologic and engineering parameters and do not integrate subsurface characterization with surface conditions, social factors, and environmental factors that may pose a benefit or impediment to the implementation of GCS. Furthermore, the data required to assess the technical viability of GCS are myriad and disparate. There is no current methodology that identifies technical viability criteria and systematically informs how to aggregate these factors for spatial assessments. To address this gap, the National Energy Technology Laboratory has developed a Carbon Storage Technical Viability Approach (CS TVA) Matrix that incorporates a wide variety of factors to inform and accelerate screening for GCS site selection in the United States.

Mulhern, Julia↗

DOE OSTI2025

Infrared Cloud Imager Instrument Intercomparison Report

The Infrared Cloud Imager Instrument Intercomparison was a guest instrument deployment by NWB Sensors to the U.S. Department of Energy’s Atmospheric Radiation Measurement (ARM) User Facility observatory on the Southern Great Plains (SGP) between May 18 and December 12, 2023. NWB Sensors is a company that has developed a commercially available infrared cloud imager (ICI). The ICI provides radiometrically calibrated, full-sky images of the downwelling infrared radiance in the 7.3-14 µm band. In addition, it provides cloud radiance as the residual between the observed radiance and the modeled cloud-free radiance as well as derived cloud products. The instrument is used in applications that require consistent detection of clouds across day and night. For more information, consult the instrument's webpage. The primary goal of the deployment was to validate the radiometric accuracy of the ICI. The ICI uses a proprietary calibration method to convert the raw data from its infrared camera into downwelling radiance. Unlike similar instruments, the system does not have an onboard blackbody calibration standard. Instead, NWB Sensors characterizes each ICI camera individually in an environmental chamber while looking at a blackbody standard. The resulting (proprietary) calibration is used operationally in the instrument and has been demonstrated to be stable over long periods. To validate the radiometric products from the ICI, an intercomparison between the ICI data products and those from ARM’s atmospheric emitted radiance interferometer (AERI) was made. The AERI is a best-in-class instrument for measuring downwelling infrared radiance (Gero et al. 2025). A weighted integration of the AERI’s spectral radiances across the ICI’s camera response was performed. The resulting radiance (herein called the AERI radiance) was directly compared to the zenith radiance concurrently observed by the ICI. The results of these comparisons are reported in the next section of this report.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1991

Environmental and strain rate effects on graphite/epoxy composites

The hygrothermal characterization of unidirectional graphite/epoxy composites over a range of strain rates was investigated. Special techniques developed for such hygrothermal characterization are also described. The mechanical properties of the composite material were obtained and analyzed by means of a time-temperature-moisture superposition principle. The results show the following: (1) the embedded gage technique was thoroughly examined and found to be appropriate for both hygrothermal expansion and mechanical strain measurements; (2) all transverse properties were found to decrease with increasing temperature and moisture content; and (3) ultimate transverse properties were found to increase with strain rate at low temperatures but follow an opposite trend at high temperatures compared to dry specimens.

Peimandis, Konstantinos↗

NASA NTRS1993

Droplet-turbulence interactions in sprays exposed to supercritical environmental conditions

The goal of this research was to experimentally characterize the behavior of droplets in vaporizing sprays under conditions typical of those encountered in high pressure combustion systems such as liquid fueled rocket engines. Of particular interest are measurements of droplet drag and lift, droplet dispersion, droplet heating, and droplet vaporization under both subcritical and supercritical conditions. A summary of the major accomplishments achieved during the period from June 1990 through June 1993, a brief description and status report on five research areas, which were directly or indirectly supported by this grant, and a list of publications and personnel associated with this research is included.

Santavicca, Domenic A.↗

NASA NTRS2003

Thermo-Optical and Mechanical Property Testing of Candidate Solar Sail Materials

Solar sailing is a unique form of propulsion where a spacecraft gains momentum from incident photons. Since sails are not limited by reaction mass, they provide continual acceleration, reduced only by the lifetime of the lightweight film in the space environment and the distance to the Sun. Practical solar sails can expand the number of possible missions, enabling new concepts that are difficult by conventional means. The National Aeronautics and Space Administration's Marshall Space Flight Center (MSFC) is concentrating research into the utilization of ultra-lightweight materials for spacecraft propulsion. Solar sails are generally composed of a highly reflective metallic front layer, a thin polymeric substrate, and occasionally a highly emissive back surface. The Space Environmental Effects Team at MSFC is actively characterizing candidate sails to evaluate the thermo-optical and mechanical properties after exposure to electrons. This poster will discuss the preliminary results of this research.

Hollerman, WIlliam A.↗

NASA NTRS2008

Improving our Understanding of Atlantic Tropical Cyclones through Knowledge of the Saharan Air Layer: Hope or Hype?

The existence of the Saharan air layer (SAL), a layer of warm, dry, dusty air that frequently moves westward off of the Saharan desert of Africa and over the tropical Atlantic Ocean, has long been appreciated. As air moves over the desert, it is strongly heated from below, producing a very hot air mass at low levels. Because there is no moisture source over the Sahara, the rise in temperature causes a sharp drop in relative humidity, thus drying the air. In addition, the warm air produces a very strong jet of easterly flow in the middle troposphere called the African easterly jet that is thought to play a critical role in hurricane formation. In recent years, there has been an increased focus on the impact that the SAL has on the formation and evolution of hurricanes in the Atlantic. However, the nature of its impact remains unclear, with some researchers arguing that the SAL amplifies hurricane development and with others arguing that it inhibits it. The argument for positively influencing hurricane development is based upon the fact that the African easterly jet produces the waves that eventually form hurricanes and that it leads to rising motion south of the jet that favors the development of deep thunderstorm clouds. The potential negative impacts of the SAL include 1) low-level vertical wind shear associated with the African easterly jet; 2) warm SAL air aloft, which increases thermodynamic stability and suppresses cloud development; and 3) dry air, which produces cold downdrafts in precipitating regions, thereby removing energy needed for storm development. As part of this recent focus on the SAL and hurricanes (which motivated a 2006 NASA field experiment), there has been little emphasis on the SAL s potential positive influences and almost complete emphasis on its possible negative influences, almost to the point of claims that the SAL is the major suppressing influence on hurricanes in the Atlantic. Multiple NASA satellite data sets (TRMM, MODIS, and AIRS/AMSU) and National Centers for Environmental Prediction global analyses are used to characterize the SAL s properties and evolution in relation to developing hurricanes. The results show that storms generally form on the southern side of the jet, where favorable background rotation is high. The jet often helps to form the northern side of the storms and rarely moves over their inner cores, so jet-induced vertical wind shear does not appear to be a negative influence on developing storms. Warm SAL air is confined to regions north of the jet and generally does not impact the tropical cyclone precipitation south of the jet. Of the three proposed negative influences, dry air appears to be the key influence; however, the presence of dry SAL air is not a good indicator of whether a storm will weaken since many examples of intensifying storms surrounded by such dry air can be found. In addition, a global view of relative humidity shows moisture distributions in other ocean basins that are almost identical to the Atlantic. The dry zones correspond to regions of descending air on the eastern and equatorward sides of semi-permanent oceanic high pressure systems. Thus, the dry air over the Atlantic appears to be primarily a product of the large-scale flow, but with enhanced drying at low levels associated with the Sahara. As a result, we conclude that the SAL is not a major negative influence on hurricanes. It is just one of many possible influences and can be both positive and negative.

Braun, Scott A.↗

NASA NTRS2009

Improving Our Understanding of Atlantic Hurricanes Through Knowledge of the Saharan Air Layer: Hope Or Hype?

The existence of the Saharan air layer (SAL), a layer of warm, dry, dusty air frequently present over the tropical Atlantic Ocean, has long been appreciated. The nature of its impact on hurricanes remains unclear, with some researchers arguing that the SAL amplifies hurricane development and with others arguing that it inhibits it. The potential negative impacts of the SAL include 1) low-level vertical wind shear associated with the African easterly jet; 2) warm air aloft, which increases thermodynamic stability; and 3) dry air, which produces cold downdrafts. Some investigators have assumed the validity of these proposed negative influences and have frequently used them to explain the failure of individual storms to intensify or to explain the relative inactivity of recent hurricane seasons. Multiple NASA satellite data sets and National Centers for Environmental Prediction global analyses are used to characterize the SAL's properties and evolution in relation to developing hurricanes. The results will shows that neither jet--induced vertical wind shear nor warm SAL air (high stability) produce significant negative impacts on Atlantic storms. Dry air appears to be a key mechanism for SAL influence, but the presence of dry SAL air is not always a good indicator of whether a storm will weaken since many examples of intensifying storms surrounded by such dry air can be found. Idealized simulations will be used to evaluate the role of dry air. Finally, two case studies of supposedly "prime examples" of SAL influence will show that the negative influences of the SAL are perhaps too readily ascribed to individual storms that fail to reach their maximum potential intensity.

Braun, Scott↗

NASA NTRS2011

Wireless Sensor Networks for Developmental and Flight Instrumentation

Wireless sensor networks (WSN) based on the IEEE 802.15.4 Personal Area Network and ZigBee Pro 2007 standards are finding increasing use in home automation and smart energy markets providing a framework for interoperable software. The Wireless Connections in Space Project, funded by the NASA Engineering and Safety Center, is developing technology, metrics and requirements for next-generation spacecraft avionics incorporating wireless data transport. The team from Stennis Space Center and Mobitrum Corporation, working under a NASA SBIR grant, has developed techniques for embedding plug-and-play software into ZigBee WSN prototypes implementing the IEEE 1451 Transducer Electronic Datasheet (TEDS) standard. The TEDS provides meta-information regarding sensors such as serial number, calibration curve and operational status. Incorporation of TEDS into wireless sensors leads directly to building application level software that can recognize sensors at run-time, dynamically instantiating sensors as they are added or removed. The Ames Research Center team has been experimenting with this technology building demonstration prototypes for on-board health monitoring. Innovations in technology, software and process can lead to dramatic improvements for managing sensor systems applied to Developmental and Flight Instrumentation (DFI) aboard aerospace vehicles. A brief overview of the plug-and-play ZigBee WSN technology is presented along with specific targets for application within the aerospace DFI market. The software architecture for the sensor nodes incorporating the TEDS information is described along with the functions of the Network Capable Gateway processor which bridges 802.15.4 PAN to the TCP/IP network. Client application software connects to the Gateway and is used to display TEDS information and real-time sensor data values updated every few seconds, incorporating error detection and logging to help measure performance and reliability in relevant target environments. Test results from our prototype WSN running the Mobitrum software system are summarized and the implications to the scalability and reliability for DFI applications are discussed. Our demonstration system, incorporating sensors for life support system and structural health monitoring is described along with test results obtained by running the demonstration prototype in relevant environments such as the Wireless Habitat Testbed at Johnson Space Center in Houston. An operations concept for improved sensor process flow from design to flight test is outlined specific to the areas of Environmental Control and Life Support System performance characterization and structural health monitoring of human-rated spacecraft. This operations concept will be used to highlight the areas where WSN technology, particularly plug-and-play software based on IEEE 1451, can improve the current process, resulting in significant reductions in the technical effort, overall cost and schedule for providing DFI capability for future spacecraft. RELEASED -

Alena, Richard↗

NASA NTRS2012

Self-Nulling Lock-in Detection Electronics for Capacitance Probe Electrometer

A multi-channel electrometer voltmeter that employs self-nulling lock-in detection electronics in conjunction with a mechanical resonator with noncontact voltage sensing electrodes has been developed for space-based measurement of an Internal Electrostatic Discharge Monitor (IESDM). The IESDM is new sensor technology targeted for integration into a Space Environmental Monitor (SEM) subsystem used for the characterization and monitoring of deep dielectric charging on spacecraft. Use of an AC-coupled lock-in amplifier with closed-loop sense-signal nulling via generation of an active guard-driving feedback voltage provides the resolution, accuracy, linearity and stability needed for long-term space-based measurement of the IESDM. This implementation relies on adjusting the feedback voltage to drive the sense current received from the resonator s variable-capacitance-probe voltage transducer to approximately zero, as limited by the signal-to-noise performance of the loop electronics. The magnitude of the sense current is proportional to the difference between the input voltage being measured and the feedback voltage, which matches the input voltage when the sense current is zero. High signal-to-noise-ratio (SNR) is achieved by synchronous detection of the sense signal using the correlated reference signal derived from the oscillator circuit that drives the mechanical resonator. The magnitude of the feedback voltage, while the loop is in a settled state with essentially zero sense current, is an accurate estimate of the input voltage being measured. This technique has many beneficial attributes including immunity to drift, high linearity, high SNR from synchronous detection of a single-frequency carrier selected to avoid potentially noisy 1/f low-frequency spectrum of the signal-chain electronics, and high accuracy provided through the benefits of a driven shield encasing the capacitance- probe transducer and guarded input triaxial lead-in. Measurements obtained from a 2- channel prototype electrometer have demonstrated good accuracy (|error| < 0.2 V) and high stability. Twenty-four-hour tests have been performed with virtually no drift. Additionally, 5,500 repeated one-second measurements of 100 V input were shown to be approximately normally distributed with a standard deviation of 140 mV.

Blaes, Brent R.↗

NASA NTRS2012

Capacitance Probe Resonator for Multichannel Electrometer

A multichannel electrometer voltmeter has been developed that employs a mechanical resonator with voltage-sensing capacitance-probe electrodes that enable high-impedance, high-voltage, radiation-hardened measurement of an Internal Electrostatic Discharge Monitor (IESDM) sensor. The IESDM is new sensor technology targeted for integration into a Space Environmental Monitor (SEM) subsystem used for the characterization and monitoring of deep dielectric charging on spacecraft. The resonator solution relies on a non-contact, voltage-sensing, sinusoidal-varying capacitor to achieve input impedances as high as 10 petaohms as determined by the resonator materials, geometries, cleanliness, and construction. The resonator is designed with one dominant mechanical degree of freedom, so it resonates as a simple harmonic oscillator and because of the linearity of the variable sense capacitor to displacement, generates a pure sinusoidal current signal for a fixed input voltage under measurement. This enables the use of an idealized phase-lock sensing scheme for optimal signal detection in the presence of noise.

Blaes, Brent R.↗

NASA NTRS2015

Scintillating Quantum Dots for Imaging X-rays (SQDIX) for Aircraft Inspection

Scintillation is the process currently employed by conventional x-ray detectors to create x-ray images. Scintillating quantum dots or nano-crystals (StQDs) are a novel, nanometer-scale material that upon excitation by x-rays, re-emit the absorbed energy as visible light. StQDs theoretically have higher output efficiency than conventional scintillating materials and are more environmental friendly. This paper will present the characterization of several critical elements in the use of StQDs that have been performed along a path to the use of this technology in wide spread x-ray imaging. Initial work on the SQDIX system has shown great promise to create state-of-the-art sensors using StQDs as a sensor material. In addition, this work also demonstrates a high degree of promise using StQDs in microstructured fiber optics. Using the microstructured fiber as a light guide could greatly increase the capture efficiency a StQDs based imaging sensor.

Burke, Eric↗

NASA NTRS2015

Scintillating Quantum Dots for Imaging X-Rays (SQDIX) for Aircraft Inspection

Scintillation is the process currently employed by conventional X-ray detectors to create X-ray images. Scintillating quantum dots (StQDs) or nano-crystals are novel, nanometer-scale materials that upon excitation by X-rays, re-emit the absorbed energy as visible light. StQDs theoretically have higher output efficiency than conventional scintillating materials and are more environmentally friendly. This paper will present the characterization of several critical elements in the use of StQDs that have been performed along a path to the use of this technology in wide spread X-ray imaging. Initial work on the scintillating quantum dots for imaging X-rays (SQDIX) system has shown great promise to create state-of-the-art sensors using StQDs as a sensor material. In addition, this work also demonstrates a high degree of promise using StQDs in microstructured fiber optics. Using the microstructured fiber as a light guide could greatly increase the capture efficiency of a StQDs based imaging sensor.

Burke, E. R.↗

NASA NTRS2016

OSIRIS-REx Visible And Infrared Spectrometer - OVIRS

Goddard Space Flight Center: Overall Instrument Responsibility; Instrument Scientist and Deputy Instrument Scientist; Management Systems Engineering; Mechanical Hardware; Harness Assemblies; SIDECAR Assembly Code; OVIRS Integration and Environmental Qualification; OVIRS Performance Testing, Calibration and Characterization.

OSIRIS-REx↗

NASA NTRSDate not supplied

Eighteen Years of Aqua MODIS On-orbit Operation, Calibration, and Performance

Aqua MODIS has successfully operated for more than 18 years since its launch in May 2002and has generated numerous science products in support of studies of the Earth’s system and its changes via a set of geophysical and environmental parameters. On-orbit calibration and characterization activities have played a vital role in maintaining the quality of MODIS data products. In addition to data collected from sensor on-board calibrators (OBC), near-monthly lunar observations and select earth view targets have been used to monitor and characterize on-orbit changes in sensor responses and to derive and update the calibration look-up tables. In this paper, we provide an overview of Aqua MODIS on-orbit operations, calibration activities and approaches, and algorithm improvements and also illustrate the sensor on-orbit performance using examples derived from various calibration sources and targets. We will focus on issues identified from instrument operations and calibrations, such as solar diffuser degradation, electronic crosstalk, variations in the cold focal plane temperatures, and changes in response versus scan-angle. Also discussed in this paper are remaining challenges and future improvements.

Aqua↗