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At least 361 records · Page 20

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

Recent studies have demonstrated that drought leads to dramatic, highly conserved shifts in the root microbiome. At present, the molecular mechanisms underlying these responses remain largely uncharacterized. Here we employ genome-resolved metagenomics and comparative genomics to demonstrate that carbohydrate and secondary metabolite transport functionalities are overrepresented within drought-enriched taxa. These data also reveal that bacterial iron transport and metabolism functionality is highly correlated with drought enrichment. Using time-series root RNA-Seq data, we demonstrate that iron homeostasis within the root is impacted by drought stress, and that loss of a plant phytosiderophore iron transporter impacts microbial community composition, leading to significant increases in the drought-enriched lineage, Actinobacteria. Finally, we show that exogenous application of iron disrupts the drought-induced enrichment of Actinobacteria, as well as their improvement in host phenotype during drought stress. Collectively, our findings implicate iron metabolism in the root microbiome’s response to drought and may inform efforts to improve plant drought tolerance to increase food security.

59 BASIC BIOLOGICAL SCIENCES↗

Hydrodynamic description of D meson production in high-energy heavy-ion collisions *

The large values and constituent-quark-number scaling of the elliptic flow of low-p T D mesons imply that charm quarks, initially produced through hard processes, might be partially thermalized through strong interactions with quark-gluon plasma (QGP) in high-energy heavy-ion collisions. To quantify the degree of thermalization of low-p T charm quarks, we compare the D 0 meson spectra and elliptic flow from a hydrodynamic model to experimental data as well as transport model simulations. We use an effective charm chemical potential at the freeze-out temperature to account for the initial charm quark production from hard processes and assume that they are thermalized in the local comoving frame of the medium before freeze-out. D 0 mesons are sampled statistically from the freeze-out hyper-surface of the expanding QGP as described by the event-by-event (3+1)D viscous hydrodynamic model CLVisc. Both the hydrodynamic and transport models can describe the elliptic flow of D 0 mesons at P T < 3 GeV/c as measured in Au+Au collisions at $sqrts_{NN} = 200$ GeV. Though the experimental data on spectra are consistent with the hydrodynamic result at small p T ~ 1 GeV/c, they deviate from the hydrodynamic model at high transverse momentum, GeV/c. The diffusion and parton energy loss mechanisms in the transport model can describe the measured spectra reasonably well within the theoretical uncertainty. Finally, our comparative study indicates that charm quarks only approach local thermal equilibrium at small p T , even though they acquire sizable elliptic flow comparable to light-quark hadrons at both small and intermediate p T .

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Viscosities of the Baryon-Rich Quark-Gluon Plasma from Beam Energy Scan Data

Here, this work presents the first Bayesian inference study of the (3 + 1)D dynamics of relativistic heavy-ion collisions and quark-gluon plasma viscosities using an event-by-event (3 + 1)D hydrodynamics + hadronic transport theoretical framework and data from the Relativistic Heavy Ion Collider Beam energy scan program. Robust constraints on initial state nuclear stopping and the baryon chemical potential-dependent shear viscosity of the produced quantum chromodynamic (QCD) matter are obtained. The specific bulk viscosity of the QCD matter is found to exhibit a preferred maximum around $\sqrt{s_{NN}}$ = 19.6 GeV . This result allows for the alternative interpretation of a reduction (and/or increase) of the speed of sound relative to that of the employed lattice-QCD based equation of state for net baryon chemical potential μ B ~0.2(0.4) GeV .

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Analysis Program Annual Progress Report (FY2020)

During fiscal year 2020 (FY 2020), the U.S. Department of Energy Vehicle Technologies Office (VTO) funded analysis projects supportive of VTO’s goals to pursue early stage research in vehicle and mobility system technologies to reduce petroleum dependence, increase energy reliability and security, improve transportation affordability, and promote economic growth. VTO analysis projects result in a foundation of data, analytical models, and applied analyses that provide insights into critical transportation energy problems and assist in research investment prioritization and portfolio planning. This document presents a brief overview of VTO analysis efforts and progress for projects funded in FY 2020. Each of the progress reports includes project objectives, approach, and highlights of the technical results that were accomplished during the fiscal year.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Progress in the Verification and Validation Efforts for START: A Spent Fuel Routing Tool

The U.S. Department of Energy’s (DOE) Office of Nuclear Energy (DOE-NE) is planning for an integrated waste management approach to transport, store, and dispose of spent nuclear fuel (SNF) and other high-level radioactive waste (HLW) as part of the Integrated Waste Management (IWM) program [1]. In support of this effort, the Stakeholder Tool for Assessing Radioactive Transportation (START) is being developed within the IWM program [2, 3]. This is a web-based decision support tool that can be used to analyze geospatial data related to the transportation of SNF and HLW. START is designed as a web-based application using an ArcGIS server through which the user can select the origin and destination of the route [4]. This is followed by selection of the mode of transportation of choice based on user preference. Some of the modes available to the user include rail, heavy haul truck, and barge. The option of utilizing more than one mode of transportation (intermodal transportation) is also implemented in START. A few examples of intermodal transportation include barge to rail, and heavy haul truck to rail. It must be noted that some routes might not have access to all modes of transportation, depending on the infrastructure availability at the origin and destination sites. Users can also select any stops or barriers they would like to introduce in the routes. This is followed by selection of the routing criteria of interest. Three primary routing options available to the user include minimum population, minimum distance, and minimum time. Apart from that, a few other options include accounting for a weighted average of the three aforementioned routing options. The next step involves the selection of the buffer distance of interest which includes the two choices available of 800 m and 2500 m, respectively. Finally, an option to select any prohibited rail carriers that the user does not wish to use is available. After making these selections, a route is ready to be created.

Gadey, Harish Reddy↗

Source Term Analysis of Xenon (STAX): An effort focused on differentiating man-made isotope production from nuclear explosions via stack monitoring

An overview of the hardware and software developed for the Source Term Analysis of Xenon (STAX) project is presented which includes the data collection from two stack monitoring systems installed at medical isotope production facilities, infrastructure to transfer data to a central repository, and methods for sharing data from the repository with users. STAX is an experiment to collect radioxenon emission data from industrial nuclear facilities with the goal of developing a better understanding of the global radioxenon background and the effect industrial radioxenon releases have on nuclear explosion monitoring. The final goal of this work is to utilize collected data along with atmospheric transport modeling to calculate the contribution of a peak or set of peaks detected by the International Monitoring System (IMS) to provide desired discriminating information to the International Data Centre (IDC) and National Data Centers (NDCs). Types of data received from the STAX equipment are shown and collected data was used for a case study to predict radioxenon concentrations at two IMS stations closest to the Institute for RadioElements (IRE) in Belgium. The initial evaluation of results indicate that the data is very valuable to the nuclear explosion monitoring community.

07 ISOTOPE AND RADIATION SOURCES↗

Ab-initio molecular dynamics study of eutectic chloride salt: MgCl2–NaCl–KCl

Ionic liquid materials are viable candidates as a heat transfer fluid (HTF) in a wide range of applications, notably within concentrated solar power (CSP) technology and molten salt reactors (MSRs). For next-generation CSP and MSR technologies that strive for higher power generation efficiency, a HTF with wide liquid phase range and energy storage capabilities is crucial. Studies have shown that eutectic chloride salts exhibit thermal stability at high temperatures, high heat storage capacity, and are less expensive than nitrate and carbonate salts. However, the experimental data needed to fully evaluate the potential of eutectic chloride salts as a HTF contender are scarce and entail large uncertainties. Considering the high cost and potential hazards associated with the experimental methods used to determine the properties of ionic liquids, molecular modeling can be used as a viable alternative resource. In this study, the eutectic ternary chloride salt MgCl 2 –NaCl–KCl is modeled using ab-initio molecular dynamics simulations (AIMDs) in the liquid phase. Using the simulated data, the thermophysical and transport properties of eutectic chloride salt can be calculated: density, viscosity, heat capacity, diffusion coefficient, and ionic conductivity. For an initial model validation, experimental pair-distribution function data were obtained from X-ray total scattering techniques and compared to the theoretical pair-distribution function. Additionally, theoretical viscosity values are compared to experimental viscosity values for a similar system. The results provide a starting foundation for a MgCl 2 –NaCl–KCl model that can be extended to predict other fundamental properties.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Henry’s Solubility and Diffusion Coefficients for 29 Volatile Organic Compounds in Polydimethylsiloxane Sylgard 184 at 293 K

Two-dimensional (2D) inverse gas chromatography (IGC) enables simultaneous determination of Henry’s solubility and Fickian diffusion coefficients for volatile organic compounds (VOCs) in polymer films. This technique offers a significant advantage over traditional cylindrical column IGC by providing precise control and measurement of the film thickness (here, 0.064 ± 0.002 mm), which is the critical length scale for accurate diffusivity determination. We apply this methodology to characterize VOC transport in Sylgard 184, a widely used polydimethylsiloxane (PDMS)-based polymer containing substantial silica filler content. At room temperature (20 °C), we measured solubility and diffusion coefficients for 29 common VOCs spanning diverse chemical functionalities, including alkanes, aromatics, chlorinated solvents, ketones, esters, and alcohols. Comparison with literature data for pure PDMS reveals that VOC solubility in Sylgard 184 is generally higher; for most non-hydrogen-bonding compounds it remains within a factor of 2 of pure PDMS, whereas alcohols are enhanced by roughly 1.8 to 3.7 times, which we attribute to favorable interactions with residual silanol groups on the silanized silica filler. Diffusion coefficients range from 1.0 × 10 –6 cm 2 /s (n-undecane) to 8.9 × 10–5 cm 2 /s (acetonitrile) and align well with extrapolated literature values for PDMS. This study provides essential thermodynamic and transport data for predicting VOC permeation in Sylgard 184 while demonstrating the utility of 2D IGC as a robust technique for characterizing rubbery polymer membranes across diverse industrial applications.

organic↗

Data requirements for improving the Quantitative Risk Assessment of liquid hydrogen storage systems

Quantitative Risk Assessment (QRA) supports the development of risk-informed safety codes and standards which are employed to enable the safe deployment of hydrogen technologies essential to decarbonize the transportation sector. System reliability data is a necessary input for rigorous QRA. Here, the lack of reliability data for bulk liquid hydrogen (LH 2 ) storage systems located on site at fueling stations limits the use of QRAs. In turn, this hinders the ability to develop the necessary safety codes and standards that enable worldwide deployment of these stations. Through a QRA-based analysis of a LH 2 storage system, this work focuses on identifying relevant scenario and probability data currently available and ascertaining future data collection requirements regarding risks specific to liquid hydrogen releases. The work developed consists of the analysis of a general bulk LH 2 storage system design located at a hydrogen fueling station. Failure Mode and Effect Analysis (FMEA) and traditional QRA modeling tools such as Event Sequence Diagrams (ESD) and Fault Tree Analysis (FTA) are employed to identify, rank, and model risk scenarios related to the release of LH 2 . Based on this analysis, scenario and reliability data needs to add LH 2 -related components to QRA are identified with the purpose of improving the future safety and risk assessment of these systems.

08 HYDROGEN↗

A dynamic likelihood approach to filtering transport processes: advection-diffusion dynamics

A Bayesian data assimilation scheme is formulated for advection-dominated advective and diffusive evolutionary problems, based upon the Dynamic Likelihood (DLF) approach to filtering. The DLF was developed specifically for hyperbolic problems –waves–, and in this paper, it is extended via a split step formulation, to handle advection-diffusion problems. In the dynamic likelihood approach, observations and their statistics are used to propagate probabilities along characteristics, evolving the likelihood in time. The estimate posterior thus inherits phase information. For advection-diffusion the advective part of the time evolution is handled on the basis of observations alone, while the diffusive part is informed through the model as well as observations. We expect, and indeed show here, that in advection-dominated problems, the DLF approach produces better estimates than other assimilation approaches, particularly when the observations are sparse and have low uncertainty. The added computational expense of the method is cubic in the total number of observations over time, which is on the same order of magnitude as a standard Kalman filter and can be mitigated by bounding the number of forward propagated observations, discarding the least informative data.

97 MATHEMATICS AND COMPUTING↗

TranSyT , an innovative framework for identifying transport systems

The importance and rate of development of genome-scale metabolic models have been growing for the last few years, increasing the demand for software solutions that automate several steps of this process. However, since TRIAGE’s release, software development for the automatic integration of transport reactions into models has stalled. Here, in this paper, we present the Transport Systems Tracker (TranSyT). Unlike other transport systems annotation software, TranSyT does not rely on manual curation to expand its internal database, which is derived from highly curated records retrieved from the Transporters Classification Database and complemented with information from other data sources. TranSyT compiles information regarding transporter families and proteins, and derives reactions into its internal database, making it available for rapid annotation of complete genomes. All transport reactions have GPR associations and can be exported with identifiers from four different metabolite databases. TranSyT is currently available as a plugin for merlin v4.0 and an app for KBase.

59 BASIC BIOLOGICAL SCIENCES↗

Integrated modeling framework (FVCOM-ICM/Toxi) to simulate the fate and transport of polychlorinated biphenyls in urban estuaries–Case study for Puget Sound, WA

Puget Sound is an urban estuary that exhibits persistent polychlorinated biphenyls (PCBs) contamination despite years of remediation efforts. For robust management actions, determining the timing, location, and magnitude of PCB loading sources and transport pathways using field data alone is challenging due to complex water circulation and biogeochemical processes. Here, this study aims to develop an integrated modeling framework that couples complex estuarian circulation with biogeochemical processes and associated interactions with PCB kinetics. The model simulates PCB accumulation in the lower tropic food web, demonstrating PCB intrusion into primary producers and its biomagnification in pelagic consumers. The PCB data from a new field survey was used to calibrate/validate the new PCB modeling framework for Puget Sound. The software program of the modeling framework is available to the user community for the applications of toxic contaminants transport in marine waters.

54 ENVIRONMENTAL SCIENCES↗

Freight Analysis Framework Version 5 (FAF5) Base Year 2017 Data Development Technical Report

The Freight Analysis Framework (FAF) integrates data from a variety of sources to create a comprehensive national picture of freight movements among states and major metropolitan areas by all modes of transportation. The latest of this data series is FAF5, which is the fifth generation FAF and is benchmarked on Commodity Flow Survey (CFS) 2017. Except for FAF1 that provided estimates for truck, rail, and water tonnage for calendar year 1998, later generations of FAF (FAF2 through FAF5) were built based on their benchmark year CFS data, for 2002, 2007, 2012, and 2017 respectively. The FAF is produced under a partnership between Bureau of Transportation Statistics (BTS) and Federal Highway Administration (FHWA). As a major data product of the FAF program, the FAF regional database provides a national picture of freight flows to, from, and within the United States (among regions and states), by commodity and mode for the base year, as well as for forecasts up to 30 years into the future in a 5-year interval. Additional FAF data products also include FAF network flows database, where truck movements are routed onto the national highway network, estimates of annual projections, and synchronized historical data series. This report is a technical document prepared to describe the data sources and methodologies applied in the process of building the FAF5 base-year 2017 regional database, released as FAF5.0 in February 2021. This report offers a description of the diverse data sources and modeling methods used in constructing the base year FAF5 regional database. The FAF5 base-year database is used as the base for development of forecasts and for assignment of truck flows on highway network. Similarly, the FAF5 base-year database will be used as the base to generate FAF5 annual estimates. In addition to this report, users are encouraged to refer to the FAF5 User’s Guide, which provides basic information of the data, including definitions of the data attributes, information on how to access the data and tool, as well as detailed data dictionary and code tables.

42 ENGINEERING↗

Thermal Neutron Scattering Law (TNSL) Implementation and Testing in FUDGE

Thermal neutron scattering law processing capabilities have been recently implemented in the LLNL code FUDGE (For Updating Data and Generating Evaluations). FUDGE is now capable of producing processed TNSL data for use in Monte Carlo or deterministic transport. To test this new capability, LLNL scientists performed an extensive intercomparison between the Mercury, Ardra, COG and MCNP transport codes. This intercomparison helped probe differences between how TNSL data are handled by the transport codes and by two different processing codes (LLNL’s FUDGE and LANL’s NJOY). This report summarizes recent improvements in FUDGE TNSL capabilities as well as results from the code intercomparison.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

From roads to roofs: How urban and rural mobility influence building energy consumption

In this article, understanding the relationship between travel behavior and building energy use at an urban scale is crucial for developing effective energy management strategies. Mobility patterns significantly impact building occupancy, which in turn affects energy consumption. However, existing methods often focus on individual buildings, whereas geographical influences on energy usage are not adequately examined. This study addresses this gap by using transportation origin-destination (OD) data to estimate building occupancy and energy. The proposed method assigns OD trips from census block groups to the building level, incorporating building, travel survey, and census data to derive building occupancy profiles. This method was applied to urban and rural areas with 4062 buildings in 70 census block groups. We found that the OD-informed occupancy profile exhibits smoother energy consumption patterns compared with that of Department of Energy reference occupancy profiles. Our analysis reveals distinct building energy consumption patterns among groups with long and short commutes, emphasizing the effect of commute times and work schedules on residential energy usage. This framework is useful for practitioners in transportation agencies and utility companies, enabling the estimation of building energy based on mobility patterns. Overall, this study shows the potential of integrating transportation and building energy data to inform cross-sector energy management strategies.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Data supporting the article titled "Heterogeneous Multiphase Flow Properties of Volcanic Rocks and Implications for Noble Gas Transport from Underground Nuclear Explosions"

The submission is a Reproducible Research (RR) data archive that contains the supporting multiphase fluid flow and curve fitting results of the Vadose Zone Journal article titled: "Heterogeneous Multiphase Flow Properties of Volcanic Rocks and Implications for Noble Gas Transport from Underground Nuclear Explosions." The article's DOI number is the following: https://doi.org/10.1002/vzj2.20123. Please see the "Methods and Materials" section of the journal article and the ReadMe.txt in the RR_ARCHIVE folder for further details. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525. SAND Number: SAND2021-3407 O.

mercury injection capillary pressure↗