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At least 361 records · Page 20

Strategies for simultaneous strengthening and toughening via nanoscopic intracrystalline defects in a biogenic ceramic

While many organisms synthesize robust skeletal composites consisting of spatially discrete organic and mineral (ceramic) phases, the intrinsic mechanical properties of the mineral phases are poorly understood. Using the shell of the marine bivalve Atrina rigida as a model system, and through a combination of multiscale structural and mechanical characterization in conjunction with theoretical and computational modeling, we uncover the underlying mechanical roles of a ubiquitous structural motif in biogenic calcite, their nanoscopic intracrystalline defects. These nanoscopic defects not only suppress the soft yielding of pure calcite through the classical precipitation strengthening mechanism, but also enhance energy dissipation through controlled nano- and micro-fracture, where the defects’ size, geometry, orientation, and distribution facilitate and guide crack initialization and propagation. These nano- and micro-scale cracks are further confined by larger scale intercrystalline organic interfaces, enabling further improved damage tolerance.

36 MATERIALS SCIENCE↗

Weak Scale Supersymmetry Emergent from the String Landscape

Superstring flux compactifications can stabilize all moduli while leading to an enormous number of vacua solutions, each leading to different 4−d laws of physics. While the string landscape provides at present the only plausible explanation for the size of the cosmological constant, it may also predict the form of weak scale supersymmetry which is expected to emerge. Rather general arguments suggest a power-law draw to large soft terms, but these are subject to an anthropic selection of a not-too-large value for the weak scale. The combined selection allows one to compute relative probabilities for the emergence of supersymmetric models from the landscape. Models with weak scale naturalness appear most likely to emerge since they have the largest parameter space on the landscape. For finetuned models such as high-scale SUSY or split SUSY, the required weak scale finetuning shrinks their parameter space to tiny volumes, making them much less likely to appear compared to natural models. Probability distributions for sparticle and Higgs masses from natural models show a preference for Higgs mass mh∼125 GeV, with sparticles typically beyond the present LHC limits, in accord with data. From these considerations, we briefly describe how natural SUSY is expected to be revealed at future LHC upgrades. This article is a contribution to the Special Edition of the journal Entropy, honoring Paul Frampton on his 80th birthday.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Interfractional Variations in the Setup of Pelvic Bony Anatomy and Soft Tissue, and Their Implications on the Delivery of Proton Therapy for Localized Prostate Cancer

Purpose: To quantify daily variations in the anatomy of patients undergoing radiation therapy for prostate carcinoma, to estimate their effect on dose distribution, and to evaluate the effectiveness of current standard planning and setup approaches employed in proton therapy. Methods: We used series of computed tomography data, which included the pretreatment scan, and between 21 and 43 in-room scans acquired on different treatment days, from 10 patients treated with intensity-modulated radiation therapy at Morristown Memorial Hospital. Variations in femur rotation angles, thickness of subcutaneous adipose tissue, and physical depth to the distal surface of the prostate for lateral beam arrangement were recorded. Proton dose distributions were planned with the standard approach. Daily variations in the location of the prescription isodose were evaluated. Results: In all 10 datasets, substantial variation was observed in the lateral tissue thickness (standard deviation of 1.7-3.6 mm for individual patients, variations of >5 mm from the planning computed tomography observed in all series), and femur rotation angle (standard deviation between 1.3{sup o} and 4.8{sup o}, with the maximum excursion exceeding 10{sup o} in 6 of 10 datasets). Shifts in the position of treated volume (98% isodose) were correlated with the variations in the lateral tissue thickness. Conclusions: Analysis suggests that, combined with image-guided setup verification, the range compensator expansion technique prevents loss of dose to target from femur rotation and soft-tissue deformation, in the majority of cases. Anatomic changes coupled with the uncertainties of particle penetration in tissue restrict possibilities for margin reduction in proton therapy of prostate cancer.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

The HARNESS Workbench: Unified and Adaptive Access to Diverse HPC Platforms

The primary goal of the Harness WorkBench (HWB) project is to investigate innovative software environments that will help enhance the overall productivity of applications science on diverse HPC platforms. Two complementary frameworks were designed: one, a virtualized command toolkit for application building, deployment, and execution, that provides a common view across diverse HPC systems, in particular the DOE leadership computing platforms (Cray, IBM, SGI, and clusters); and two, a unified runtime environment that consolidates access to runtime services via an adaptive framework for execution-time and post processing activities. A prototype of the first was developed based on the concept of a 'system-call virtual machine' (SCVM), to enhance portability of the HPC application deployment process across heterogeneous high-end machines. The SCVM approach to portable builds is based on the insertion of toolkit-interpretable directives into original application build scripts. Modifications resulting from these directives preserve the semantics of the original build instruction flow. The execution of the build script is controlled by our toolkit that intercepts build script commands in a manner transparent to the end-user. We have applied this approach to a scientific production code (Gamess-US) on the Cray-XT5 machine. The second facet, termed Unibus, aims to facilitate provisioning and aggregation of multifaceted resources from resource providers and end-users perspectives. To achieve that, Unibus proposes a Capability Model and mediators (resource drivers) to virtualize access to diverse resources, and soft and successive conditioning to enable automatic and user-transparent resource provisioning. A proof of concept implementation has demonstrated the viability of this approach on high end machines, grid systems and computing clouds.

97 MATHEMATICS AND COMPUTING↗

Dimensionality and noise in energy selective x-ray imaging

Purpose: To develop and test a method to quantify the effect of dimensionality on the noise in energy selective x-ray imaging.Methods: The Cramèr-Rao lower bound (CRLB), a universal lower limit of the covariance of any unbiased estimator, is used to quantify the noise. It is shown that increasing dimensionality always increases, or at best leaves the same, the variance. An analytic formula for the increase in variance in an energy selective x-ray system is derived. The formula is used to gain insight into the dependence of the increase in variance on the properties of the additional basis functions, the measurement noise covariance, and the source spectrum. The formula is also used with computer simulations to quantify the dependence of the additional variance on these factors. Simulated images of an object with three materials are used to demonstrate the trade-off of increased information with dimensionality and noise. The images are computed from energy selective data with a maximum likelihood estimator.Results: The increase in variance depends most importantly on the dimension and on the properties of the additional basis functions. With the attenuation coefficients of cortical bone, soft tissue, and adipose tissue as the basis functions, the increase in variance of the bone component from two to three dimensions is 1.4 × 10{sup 3}. With the soft tissue component, it is 2.7 × 10{sup 4}. If the attenuation coefficient of a high atomic number contrast agent is used as the third basis function, there is only a slight increase in the variance from two to three basis functions, 1.03 and 7.4 for the bone and soft tissue components, respectively. The changes in spectrum shape with beam hardening also have a substantial effect. They increase the variance by a factor of approximately 200 for the bone component and 220 for the soft tissue component as the soft tissue object thickness increases from 1 to 30 cm. Decreasing the energy resolution of the detectors increases the variance of the bone component markedly with three dimension processing, approximately a factor of 25 as the resolution decreases from 100 to 3 bins. The increase with two dimension processing for adipose tissue is a factor of two and with the contrast agent as the third material for two or three dimensions is also a factor of two for both components. The simulated images show that a maximum likelihood estimator can be used to process energy selective x-ray data to produce images with noise close to the CRLB.Conclusions: The method presented can be used to compute the effects of the object attenuation coefficients and the x-ray system properties on the relationship of dimensionality and noise in energy selective x-ray imaging systems.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Updated Outcome and Analysis of Tumor Response in Mobile Spine and Sacral Chordoma Treated With Definitive High-Dose Photon/Proton Radiation Therapy

Purpose: Treatment of spine and sacral chordoma generally involves surgical resection, usually in conjunction with radiation therapy. In certain circumstances where resection may result in significant neurologic or organ dysfunction, patients can be treated definitively with radiation therapy alone. Herein, we report the outcome and the assessment of tumor response to definitive radiation therapy. Methods and Materials: A retrospective analysis was performed on 40 patients with unresected chordoma treated with photon/proton radiation therapy. Nineteen patients had complete sets of imaging scans. The soft tissue and bone compartments of the tumor were defined separately. Tumor response was evaluated by the modified Response Evaluation Criteria in Solid Tumors (RECIST) and volumetric analysis. Results: With a median follow-up time of 50.3 months, the rates of 5-year local control, overall survival, disease-specific survival, and distant failure were 85.4%, 81.9%, 89.4%, and 20.2%, respectively. Eighty-four computed tomographic and magnetic resonance imaging scans were reviewed. Among the 19 patients, only 4 local failures occurred, and the median tumor dose was 77.4 GyRBE. Analysis at a median follow-up time of 18 months showed significant volumetric reduction of the total target volume (TTV) and the soft tissue target volume (STTV) within the first 24 months after treatment initiation, followed by further gradual reduction throughout the rest of the follow-up period. The median maximum percentage volumetric regressions of TTV and STTV were 43.2% and 70.4%, respectively. There was only a small reduction in bone target volume over time. In comparison with the modified RECIST, volumetric analysis was more reliable, more reproducible, and could help in measuring minimal changes in the tumor volume. Conclusion: These results continue to support the use of high-dose definitive radiation therapy for selected patients with unresected spine and sacral chordomas. Assessment of tumor response to radiation therapy by volumetric analysis is superior to modified RECIST in chordoma patients. Evaluating the soft tissue target volume is an excellent indicator of tumor response.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Atomic structure of an FeCrMoCBY metallic glass revealed by high energy x-ray diffraction

Amorphous bulk metallic glasses with the composition Fe 48 Cr 15 Mo 14 C 15 B 6 Y 2 have been of interest due to their special mechanical and electronic properties, including corrosion resistance, high yield-strength, large elasticity, catalytic performance, and soft ferromagnetism. Here, we apply a reverse Monte Carlo technique to unravel the atomic structure of these glasses. The pair-distribution functions for various atomic pairs are computed based on the high-energy x-ray diffraction data we have taken from an amorphous sample. Monte Carlo cycles are used to move the atomic positions until the model reproduces the experimental pair-distribution function. The resulting fitted model is consistent with our ab initio simulations of the metallic glass. Our study contributes to the understanding of functional properties of Fe-based bulk metallic glasses driven by disorder effects.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Absorption Features in Spectra of Magnetized Neutron Stars

The X-ray spectra of some magnetized isolated neutron stars (NSs) show absorption features with equivalent widths (EWs) of 50-200 eV, whose nature is not yet well known.To explain the prominent absorption features in the soft X-ray spectra of the highly magnetized (B{approx}10{sup 14} G) X-ray dim isolated NSs (XDINSs), we theoretically investigate different NS local surface models, including naked condensed iron surfaces and partially ionized hydrogen model atmospheres, with semi-infinite and thin atmospheres above the condensed surface. We also developed a code for computing light curves and integral emergent spectra of magnetized neutron stars with various temperature and magnetic field distributions over the NS surface. We compare the general properties of the computed and observed light curves and integral spectra for XDINS RBS 1223 and conclude that the observations can be explained by a thin hydrogen atmosphere above the condensed iron surface, while the presence of a strong toroidal magnetic field component on the XDINS surface is unlikely.We suggest that the harmonically spaced absorption features in the soft X-ray spectrum of the central compact object (CCO) 1E 1207.4-5209 (hereafter 1E 1207) correspond to peaks in the energy dependence of the free-free opacity in a quantizing magnetic field, known as quantum oscillations. To explore observable properties of these quantum oscillations, we calculate models of hydrogen NS atmospheres with B{approx}10{sup 10}-10{sup 11} G(i.e., electron cyclotron energy E{sub c,e}{approx}0.1-1 keV) and T{sub eff} = 1-3 MK. Such conditions are thought to be typical for 1E 1207. We show that observable features at the electron cyclotron harmonics with EWs {approx_equal}100-200 eV can arise due to these quantum oscillations.

79 ASTRONOMY AND ASTROPHYSICS↗

Rich-Text based PSA Model Transformation and Verification in RiskA

Nuclear Energy is one of the most possible alternative to fossil energy in large-scale. Nuclear safety is the lifeline of nuclear energy development, and has been an important part of national security, especially after the accident of Fukushima. On the basis of computer codes, reliability engineering and Probabilistic Risk Assessment (PSA) is effective methods to improve the safety of nuclear power plants. After many years of development, the methodologies, applications and relevant soft programs have been quite sufficient in the area of nuclear safety. However, it is still difficult for the current PSA technologies and software to meet the needs of dealing with the problems of quantitatively public risk assessment in the digital society. Especially, there are so many software that adopted different modeling and analyzing methods, which brings difficulties to the comparison, evaluation or verification for different software and models. By using its own academic advantages, the advanced nuclear energy research team, i.e., FDS Team has invested a few hundreds person-years of independent research and development of a reliability and probabilistic safety assessment software system RiskA. The system consists of three main functions: device reliability optimization management, probabilistic safety assessment and instantaneous risk monitoring, and the comprehensive public risk assessment in digital society. RiskA establishes an integrated risk evaluation system for the device reliability, nuclear power plant (NPP) risk monitoring and public risk assessment. Currently, RiskA has successfully been applied in more than 600 organizations and institutes from a variety of fields in 39 countries, involving nuclear, aerospace, defense and so on. For example, RiskA has been used in the safety analysis of International Thermonuclear Experimental Reactor (ITER), FDS series fusion reactor, and the Strategic Priority Research Program of Chinese Academy of Sciences 'the Future Advanced Nuclear Fission Energy - Accelerator Driven Sub-critical (ADS) transmutation system'. Also, RiskA has been used in public risk communication and risk assessment. Among them, Third Qinshan nuclear power plant Risk Monitor (TQRM), which is the China's first domestic nuclear safety analysis software used in the actual online operation, has been highly apprised by renowned experts in the field. Meanwhile, it has been identified as the first domestic nuclear power plant risk monitoring system with completely independent intellectual property rights, and has reached the international advanced level. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Enabling Diverse Software Stacks on Supercomputers using High Performance Virtual Clusters.

While large-scale simulations have been the hallmark of the High Performance Computing (HPC) community for decades, Large Scale Data Analytics (LSDA) workloads are gaining attention within the scientific community not only as a processing component to large HPC simulations, but also as standalone scientific tools for knowledge discovery. With the path towards Exascale, new HPC runtime systems are also emerging in a way that differs from classical distributed com- puting models. However, system software for such capabilities on the latest extreme-scale DOE supercomputing needs to be enhanced to more appropriately support these types of emerging soft- ware ecosystems. In this paper, we propose the use of Virtual Clusters on advanced supercomputing resources to enable systems to support not only HPC workloads, but also emerging big data stacks. Specifi- cally, we have deployed the KVM hypervisor within Cray's Compute Node Linux on a XC-series supercomputer testbed. We also use libvirt and QEMU to manage and provision VMs directly on compute nodes, leveraging Ethernet-over-Aries network emulation. To our knowledge, this is the first known use of KVM on a true MPP supercomputer. We investigate the overhead our solution using HPC benchmarks, both evaluating single-node performance as well as weak scaling of a 32-node virtual cluster. Overall, we find single node performance of our solution using KVM on a Cray is very efficient with near-native performance. However overhead increases by up to 20% as virtual cluster size increases, due to limitations of the Ethernet-over-Aries bridged network. Furthermore, we deploy Apache Spark with large data analysis workloads in a Virtual Cluster, ef- fectively demonstrating how diverse software ecosystems can be supported by High Performance Virtual Clusters.

97 MATHEMATICS AND COMPUTING↗

An Effective Preoperative Three-Dimensional Radiotherapy Target Volume for Extremity Soft Tissue Sarcoma and the Effect of Margin Width on Local Control

Purpose: There is little information on the appropriate three-dimensional (3D) preoperative radiotherapy (XRT) volume for extremity soft-tissue sarcomas (STS). We retrospectively analyzed the pattern of local failure (LF) to help elucidate optimal field design. Methods and Materials: We analyzed the 56 patients who underwent computed tomography-planned XRT for Stage I to III extremity STS between June 2000 and December 2006. Clinical target volume (CTV) included the T1 post-gadolinium-defined gross tumor volume with 1- to 1.5-cm radial and 3.5-cm longitudinal margins. Planning target volume expansion was 5 to 7 mm, and {>=}95% of dose was delivered to the planning target volume. Preoperative XRT was 44 to 50.4 Gy (median, 50). Postoperative boost of 10 to 20 Gy was given to 12 patients (6 with positive and 6 with close margins). Results: Follow-up ranged from 15 to 76 months (median, 41 months). The 5-year local control, freedom from distant metastasis, disease-free survival, and overall survival were 88.5%, 80.0%, 77.5% and 82.8%, respectively. Three patients (all with positive margin) experienced local failure (LF) as first relapse (2 isolated, 1 with distant failure), and 2 additional patients (all with margin<1 mm) had late LF after distant metastasis. The LFs were within the CTV in 3 patients and within and also extending beyond the CTV in 2 patients. Conclusions: These target volume definitions appear to be appropriate for most patients. No local recurrences were observed with surgical margins {>=}1 mm, and it appears that these may be adequate for patients with extremity STS treated with preoperative radiotherapy.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Coarse-grained model of water diffusion and proton conductivity in hydrated polyelectrolyte membrane

Using dissipative particle dynamics (DPD), we simulate nanoscale segregation, water diffusion, and proton conductivity in hydrated sulfonated polystyrene (sPS). We employ a novel model [Lee et al. J. Chem. Theory Comput. 11(9), 4395-4403 (2015)] that incorporates protonation/deprotonation equilibria into DPD simulations. The polymer and water are modeled by coarse-grained beads interacting via short-range soft repulsion and smeared charge electrostatic potentials. The proton is introduced as a separate charged bead that forms dissociable Morse bonds with the base beads representing water and sulfonate anions. Morse bond formation and breakup artificially mimics the Grotthuss mechanism of proton hopping between the bases. The DPD model is parameterized by matching the proton mobility in bulk water, dissociation constant of benzenesulfonic acid, and liquid-liquid equilibrium of water-ethylbenzene solutions. The DPD simulations semi-quantitatively predict nanoscale segregation in the hydrated sPS into hydrophobic and hydrophilic subphases, water self-diffusion, and proton mobility. As the hydration level increases, the hydrophilic subphase exhibits a percolation transition from isolated water clusters to a 3D network. The analysis of hydrophilic subphase connectivity and water diffusion demonstrates the importance of the dynamic percolation effect of formation and breakup of temporary junctions between water clusters. The proposed DPD model qualitatively predicts the ratio of proton to water self-diffusion and its dependence on the hydration level that is in reasonable agreement with experiments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Eulerian simulation of complex suspensions and biolocomotion in three dimensions

Significance Fluid–structure interactions are ubiquitous in many natural and man-made environments. They are difficult to study analytically, and therefore accurate and flexible computational methods are an indispensable tool in the field. Typically, fluids are simulated with a fixed background computational mesh, whereas a solid is simulated with a mesh that moves with it, making it challenging to couple the two. Here we develop a three-dimensional computational method where both fluid and solid can be represented on a fixed computational grid, which simplifies the coupling between the two phases considerably. Our method can simulate scenarios that are difficult to do with other methods, such as complex suspensions containing soft particles that are both heavier and lighter than the fluid.

3D fluid-structure interaction↗

Voltage Regulator Chip: Power Supplies on a Chip

ADEPT Project: CPES at Virginia Tech is finding ways to save real estate on a computer's motherboard that could be used for other critical functions. Every computer processor today contains a voltage regulator that automatically maintains a constant level of electricity entering the device. These regulators contain bulky components and take up about 30% of a computer's motherboard. CPES at Virginia Tech is developing a voltage regulator that uses semiconductors made of gallium nitride on silicon (GaN-on-Si) and high-frequency soft magnetic material. These materials are integrated on a small, 3D chip that can handle the same amount of power as traditional voltage regulators at 1/10 the size and with improved efficiency. The small size also frees up to 90% of the motherboard space occupied by current voltage regulators.

ADEPT↗

Partial differential equations preconditioner resilient to soft and hard faults

We present a domain-decomposition-based preconditioner for the solution of partial differential equations (PDEs) that is resilient to both soft and hard faults. The algorithm reformulates the PDE as a sampling problem, followed by a solution update through data manipulation that is resilient to both soft and hard faults. This reformulation allows us to recast the problem as a set of independent tasks, and exploit data locality to reduce global communication. We discuss two different parallel implementations: (a) a single program multiple data (SPMD) version based on a one-to-one mapping between subdomain and MPI processes responsible for both state and computation; and (b) an asynchronous server–client implementation where all state information is held by the servers and clients are designed solely as computational units. We present a scalability comparison of both implementations under nominal conditions, showing efficiency within ~80% for up to 12,000 cores. We present a resilience analysis under different fault scenarios based on the server–client implementation. This framework provides resiliency to hard faults such that if a client crashes, it stops asking for work, and the servers simply distribute the work among all of the other clients alive. Erroneous subdomain solves (e.g. due to soft faults) appear as corrupted data, which is either rejected if that causes a task to fail, or is seamlessly filtered out during the regression stage through a suitable noise model. Three different types of faults are modeled: hard faults modeling nodes (or clients) crashing; soft faults occurring during the communication of the tasks between server and clients; and soft faults occurring during task execution. We demonstrate the resiliency of the approach for a 2D elliptic PDE, and explore the effect of the faults at various failure rates.

97 MATHEMATICS AND COMPUTING↗

Inclusive prompt photon production in electron-nucleus scattering at small x

Here, we compute the differential cross-section for inclusive prompt photon production in deeply inelastic scattering (DIS) of electrons on nuclei at small x in the framework of the Color Glass Condensate (CGC) effective theory. The leading order (LO) computation in this framework resums leading logarithms in x as well as power corrections to all orders in Q s,A 2 /Q 2 , where Q s,A (x) is the nuclear saturation scale. This LO result is proportional to universal dipole and quadrupole Wilson line correlators in the nucleus. In the soft photon limit, the Low-Burnett-Kroll theorem allows us to recover existing results on inclusive DIS dijet production. The k⊥ and collinearly factorized expressions for prompt photon production in DIS are also recovered in a leading twist approximation to our result. In the latter case, our result corresponds to the dominant next-to-leading order (NLO) perturbative QCD contribution at small x. We next discuss the computation of the NLO corrections to inclusive prompt photon production in the CGC framework. In particular, we emphasize the advantages for higher order computations in inclusive photon production, and for fully inclusive DIS, arising from the simple momentum space structure of the dressed quark and gluon “shock wave” propagators in the “wrong” light cone gauge A – = 0 for a nucleus moving with P N + → ∞.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Probing Transverse-Momentum Dependent Evolution With Groomed Jets

We propose an observable which involves measuring the properties (transverse momentum p$_{h⊥}$ and energy fraction z$_h$ of an identified hadron inside a groomed jet. The jet is identified with an anti-kT/CA algorithm and is groomed by implementing the modified mass drop procedure with an energy cut-off parameter, z cut . The transverse momentum of the hadron inside the jet is measured with respect to the groomed jet axis. We obtain a factorization theorem in the framework of Soft Collinear Effective Theory (SCET), to define a Transverse Momentum Dependent Fragmenting Jet Function (TMDFJF). The TMDFJF is factorized into collinear and collinear soft modes by matching onto SCET+. We resum large logarithms in E J /p$_{h⊥}$, where EJ is the ungroomed jet energy, to NLL accuracy and apply this formalism for computing the shape of the ph⊥ distribution of a pion produced in an e + + e - collision. We observe that the introduction of grooming makes this observable insensitive to non-global logarithms and particularly sensitive to non-perturbative physics of the transverse momentum dependent evolution at low values of p$_{h⊥}$, which can be probed in the variation of the cut-off parameter, z cut , of the groomer. We discuss how this observable can be used to distinguish between non-perturbative models that describe universal TMD evolution and provide a window into the three dimensional structure of hadrons.

74 ATOMIC AND MOLECULAR PHYSICS↗