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At least 361 records · Page 20

Ion versus Electron Heating in Compressively Driven Astrophysical Gyrokinetic Turbulence

The partition of irreversible heating between ions and electrons in compressively driven (but subsonic) collisionless turbulence is investigated by means of nonlinear hybrid gyrokinetic simulations. We derive a prescription for the ion-to-electron heating ratio Q i /Q e as a function of the compressive-to-Alfvénic driving power ratio P compr /P AW , of the ratio of ion thermal pressure to magnetic pressure β i , and of the ratio of ion-to-electron background temperatures T i /T e . It is shown that Q i /Q e is an increasing function of P compr /P AW . When the compressive driving is sufficiently large, Q i /Q e approaches ≃P compr /P AW . This indicates that, in turbulence with large compressive fluctuations, the partition of heating is decided at the injection scales, rather than at kinetic scales. Analysis of phase-space spectra shows that the energy transfer from inertial-range compressive fluctuations to sub-Larmor-scale kinetic Alfvén waves is absent for both low and high β i , meaning that the compressive driving is directly connected to the ion-entropy fluctuations, which are converted into ion thermal energy. This result suggests that preferential electron heating is a very special case requiring low βi and no, or weak, compressive driving. Our heating prescription has wide-ranging applications, including to the solar wind and to hot accretion disks such as M87 and Sgr A*.

79 ASTRONOMY AND ASTROPHYSICS↗

Mini-apps for high performance data analysis

Scaling-up scientific data analysis and machine learning algorithms for data-driven discovery is a grand challenge that we face today. Despite the growing need for analysis from science domains that are generating `Big Data' from instruments and simulations, building high-performance analytical workflows of data-intensive algorithms have been daunting because: (i) the `Big Data' hardware and software architecture landscape is constantly evolving, (ii) newer architectures impose new programming models, and (iii) data-parallel kernels of analysis algorithms and their performance facets on different architectures are poorly understood. To address these problems, we have: (i) identified scalable data-parallel kernels of popular data analysis algorithms, (ii) implemented `Mini-Apps' of those kernels using different programming models (e.g. Map Reduce, MPI, etc.), (iii) benchmarked and validated the performance of the kernels in diverse architectures. In this paper, we discuss two of those Mini-Apps and show the execution of principal component analysis built as a workflow of the Mini-Apps. We show that Mini-Apps enable scientists to (i) write domain-specific data analysis code that scales on most HPC hardware and (ii) and offers the ability (most times with over a 10x speed-up) to analyze data sizes 100 times the size of what off-the-shelf desktop/workstations of today can handle.

Sukumar, Sreenivas R.↗

Improvement of three-field based safety analysis code, SPACE, through verification and validation

To verify and validate the state-of-the-art safety analysis code, SPACE, features of three field governing equations were arranged and the comparative analysis with both analytic solution and experimental benchmarks were performed. With the world wide streamline on the safety analysis, SPACE uses two-fluid, three-field governing equations which aim to implement multi-dimensional and multi-scaled analysis. Through the Verification and Validation (V and V), developing code based on the three-field governing equation have not only been confirmed but also improved. V and V activities on SPACE have been conducted as to interfacial drag model in vertical turbulent flow. The verification of the interfacial drag model was based on cell size sensitivity test for confirming feasible calculation range of cell size. Furthermore, through the validation with analytic solution, the modification of the interfacial drag model in vertical turbulent annulus flow was carried out and the nominated model was incorporated. Modified interfacial drag model, Asali's correlation, yields improved result than previous interfacial drag model. The validation with experimental benchmarks had also been performed on the nearly horizontal counter current limitation. To confirm the possibility of the further application of the CCFL model in case with horizontal pipe, validation with nearly horizontal pipe experiment was carried out. V and V activities of SPACE with analytic solution and experimental benchmarks allow us to confirm/identify the tailorability for safety analysis. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Quantitative approaches for multiscale structural analysis with atomic resolution electron microscopy

Atomic-resolution imaging with scanning transmission electron microscopy is a powerful tool for characterizing the nanoscale structure of materials, in particular features such as defects, local strains, and symmetry-breaking distortions. In addition to advanced instrumentation, the effectiveness of the technique depends on computational image analysis to extract meaningful features from complex datasets recorded in experiments, which can be complicated by the presence of noise and artifacts, small or overlapping features, and the need to scale analysis over large representative areas. Here, we present image analysis approaches which synergize real and reciprocal space information to efficiently and reliably obtain meaningful structural information with picometer scale precision across hundreds of nanometers of material from atomic-resolution electron microscope images. Damping superstructure peaks in reciprocal space allows symmetry-breaking structural distortions to be disentangled from other sources of inhomogeneity and measured with high precision. Real-space fitting of the wavelike signals resulting from Fourier filtering enables absolute quantification of lattice parameter variations and strain, as well as the uncertainty associated with these measurements. Implementations of these algorithms are made available as an open source python package.

36 MATERIALS SCIENCE↗

Atmospheric circulation of Venus

Observational data of Venus are utilized to study rotational effects on atmospheric circulations. The high surface temperature and planetary-scale turbulent motion at cloud tops, and the relation between energy and momentum budget are examined. The limited amount of data available on the vertical and horizontal distribution of net radiative heating, the zonal wind structure, and waves affects the study of the temperature and motion on Venus. The limitations of the scaling analysis used to estimate the properties of the circulation as regards the cyclostrophic balance, the extent of the Hadley circulation, large-scale wave transport, vertical propagation of waves, convection, and turbulence are considered. Hypotheses concerned with the deep, cloud-level, and upper atmospheres of Venus are proposed. Future research in the areas of propagating planetary- scale waves, zonal flow and planetary-scale wave instability processes, and convection is suggested.

Rossow, W. B.↗

Continental-Scale Geographic Trends in Barometric-Pumping Efficiency Potential: A North American Case Study

Barometric pumping is a gas transport mechanism that has important implications for many applications involving subsurface gas seepage processes. Here, this study provides the first continental-scale analysis of barometric-pumping efficiency potential based on meteorology. We quantified the barometric-pumping efficiency potential at 1,257 locations across the continental US and Canada. The results provide continental-scale geographic dependencies of barometric-pumping efficiency potential, indicating a significant correlation with latitude and a nonlinear dependence on longitude. The analysis also indicates that variability in barometric-pumping efficiency potential decreases with distance from the coast and as elevation increases. Locations far from the coastline are more likely to have upper mid-range potentials, while higher elevation locations are more likely to have low potentials. The highest barometric-pumping efficiency potentials are mostly found around the Gulf of St. Lawrence around 50°N. Locations along the Atlantic coast exhibit large-scale variations in potentials with a clear increasing trend with latitude.

58 GEOSCIENCES↗

Stress analysis of 27% scale model of AH-64 main rotor hub

Stress analysis of an AH-64 27% scale model rotor hub was performed. Component loads and stresses were calculated based upon blade root loads and motions. The static and fatigue analysis indicates positive margins of safety in all components checked. Using the format developed here, the hub can be stress checked for future application.

Hodges, R. V.↗

Grizzly Development for Light Water Reactor and Advanced Reactor Applications in Fiscal Year 2021

This report summarizes work performed during Fiscal Year (FY) 2021 at Idaho National Laboratory (INL) for the U.S. Department of Energy’s Nuclear Engineering Advanced Modeling and Simulation (NEAMS) program for the Structural Materials and Chemistry Technical Area in the work package entitled “MS-21IN050106 - Structural Materials - INL.” This effort mainly focused on development and application of capabilities for engineering-scale analysis of nuclear reactor structural components in the Grizzly and BlackBear codes. These efforts include performance improvements and application of models for high-temperature component response, cluster dynamics modeling of precipitation in light water reactor pressure vessel steel, engineering-scale capability development in the areas of concrete simulation and reactor pressure vessel analysis, and preparation for and conducting an independent assessment of the adherence of these codes to software quality standards.

36 MATERIALS SCIENCE↗

Simulation of Mesoscale Cellular Convection in Marine Stratocumulus. Part I: Drizzling Conditions

This study uses eddy-permitting simulations to investigate the mechanisms that promote mesoscale variability of moisture in drizzling stratocumulus-topped marine boundary layers. Simulations show that precipitation tends to increase horizontal scales. Analysis of terms in the prognostic equation for total water mixing ratio variance indicates that moisture stratification plays a leading role in setting horizontal scales. This result is supported by simulations in which horizontal mean thermodynamic profiles are strongly nudged to their initial well-mixed state, which limits cloud scales. It is found that the spatial variability of subcloud moist cold pools surprisingly tends to respond to, rather than determine, the mesoscale variability, which may distinguish them from dry cold pools associated with deeper convection. Finally, simulations also indicate that moisture stratification increases cloud scales specifically by increasing latent heating within updrafts, which increases updraft buoyancy and favors greater horizontal scales.

54 ENVIRONMENTAL SCIENCES↗

Conceptual design and analysis of a dynamic scale model of the Space Station Freedom

This report documents the conceptual design study performed to evaluate design options for a subscale dynamic test model which could be used to investigate the expected on-orbit structural dynamic characteristics of the Space Station Freedom early build configurations. The baseline option was a 'near-replica' model of the SSF SC-7 pre-integrated truss configuration. The approach used to develop conceptual design options involved three sets of studies: evaluation of the full-scale design and analysis databases, conducting scale factor trade studies, and performing design sensitivity studies. The scale factor trade study was conducted to develop a fundamental understanding of the key scaling parameters that drive design, performance and cost of a SSF dynamic scale model. Four scale model options were estimated: 1/4, 1/5, 1/7, and 1/10 scale. Prototype hardware was fabricated to assess producibility issues. Based on the results of the study, a 1/4-scale size is recommended based on the increased model fidelity associated with a larger scale factor. A design sensitivity study was performed to identify critical hardware component properties that drive dynamic performance. A total of 118 component properties were identified which require high-fidelity replication. Lower fidelity dynamic similarity scaling can be used for non-critical components.

Davis, D. A.↗

Detailed Nb Surface Morphology Evolution During Electropolishing for SRF Cavity Production

Electropolishing of niobium is currently an important part of attaining the best performance of SRF cavities. We endeavor to develop sufficient understanding of the process dynamics to gain predictive power over specific topographies subjected to controlled electropolishing conditions. This work examines the evolution of highly reproducible Nb surface morphology produced by centrifugal barrel polishing (CBP) of fine-grain and single-crystal material as this material is electropolished under different well-controlled conditions. The morphology evolution of Nb surface has been described using a combined approach of scaling analysis and predictions of the electropolishing theory. Our results shows that electropolishing at low temperature (<25 C) helps to smooth out the surface feature scales within the diffusion layer (<20 µm) and to reduce the kinetics-controlled surface etching. A preliminary computational model has been developed that simulates the evolution of specific topography of a niobium surface under parametrized conditions. This work is expected to lead to the direct linking of starting surface morphology specification, specific processing protocol, and consistently attained finished surface condition.

Tian, H.↗

SU-E-I-100: Heterogeneity Studying for Primary and Lymphoma Tumors by Using Multi-Scale Image Texture Analysis with PET-CT Images

Purpose: The purpose of this research is studying tumor heterogeneity of the primary and lymphoma by using multi-scale texture analysis with PET-CT images, where the tumor heterogeneity is expressed by texture features. Methods: Datasets were collected from 12 lung cancer patients, and both of primary and lymphoma tumors were detected with all these patients. All patients underwent whole-body 18F-FDG PET/CT scan before treatment.The regions of interest (ROI) of primary and lymphoma tumor were contoured by experienced clinical doctors. Then the ROI of primary and lymphoma tumor is extracted automatically by using Matlab software. According to the geometry size of contour structure, the images of tumor are decomposed by multi-scale method.Wavelet transform was performed on ROI structures within images by L layers sampling, and then wavelet sub-bands which have the same size of the original image are obtained. The number of sub-bands is 3L+1.The gray level co-occurrence matrix (GLCM) is calculated within different sub-bands, thenenergy, inertia, correlation and gray in-homogeneity were extracted from GLCM.Finally, heterogeneity statistical analysis was studied for primary and lymphoma tumor using the texture features. Results: Energy, inertia, correlation and gray in-homogeneity are calculated with our experiments for heterogeneity statistical analysis.Energy for primary and lymphomatumor is equal with the same patient, while gray in-homogeneity and inertia of primaryare 2.59595±0.00855, 0.6439±0.0007 respectively. Gray in-homogeneity and inertia of lymphoma are 2.60115±0.00635, 0.64435±0.00055 respectively. The experiments showed that the volume of lymphoma is smaller than primary tumor, but thegray in-homogeneity and inertia were higher than primary tumor with the same patient, and the correlation with lymphoma tumors is zero, while the correlation with primary tumor isslightly strong. Conclusion: This studying showed that there were effective heterogeneity differences between primary and lymphoma tumor by multi-scale image texture analysis. This work is supported by National Natural Science Foundation of China (No. 61201441), Research Fund for Excellent Young and Middle-aged Scientists of Shandong Province (No. BS2012DX038), Project of Shandong Province Higher Educational Science and Technology Program (No. J12LN23), Jinan youth science and technology star (No.20120109)

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Fractal mechanisms and heart rate dynamics. Long-range correlations and their breakdown with disease

Under healthy conditions, the normal cardiac (sinus) interbeat interval fluctuates in a complex manner. Quantitative analysis using techniques adapted from statistical physics reveals the presence of long-range power-law correlations extending over thousands of heartbeats. This scale-invariant (fractal) behavior suggests that the regulatory system generating these fluctuations is operating far from equilibrium. In contrast, it is found that for subjects at high risk of sudden death (e.g., congestive heart failure patients), these long-range correlations break down. Application of fractal scaling analysis and related techniques provides new approaches to assessing cardiac risk and forecasting sudden cardiac death, as well as motivating development of novel physiologic models of systems that appear to be heterodynamic rather than homeostatic.

NASA Discipline Cardiopulmonary↗

Staghorn: An Automated Large-Scale Distributed System Analysis Platform

Conducting experiments on large-scale distributed computing systems is becoming significantly easier with the assistance of emulation. Researchers can now create a model of a distributed computing environment and then generate a virtual, laboratory copy of the entire system composed of potentially thousands of virtual machines, switches, and software. The use of real software, running at clock rate in full virtual machines, allows experiments to produce meaningful results without necessitating a full understanding of all model components. However, the ability to inspect and modify elements within these models is bound by the limitation that such modifications must compete with the model, either running in or alongside it. This inhibits entire classes of analyses from being conducted upon these models. We developed a mechanism to snapshot an entire emulation-based model as it is running. This allows us to \freeze time" and subsequently fork execution, replay execution, modify arbitrary parts of the model, or deeply explore the model. This snapshot includes capturing packets in transit and other input/output state along with the running virtual machines. We were able to build this system in Linux using Open vSwitch and Kernel Virtual Machines on top of Sandia's emulation platform Firewheel. This primitive opens the door to numerous subsequent analyses on models, including state space exploration, debugging distributed systems, performance optimizations, improved training environments, and improved experiment repeatability.

97 MATHEMATICS AND COMPUTING↗

Maintaining a Local Data Integration System in Support of Weather Forecast Operations

Since 2000, both the National Weather Service in Melbourne, FL (NWS MLB) and the Spaceflight Meteorology Group (SMG) have used a local data integration system (LDIS) as part of their forecast and warning operations. Each has benefited from 3-dimensional analyses that are delivered to forecasters every 15 minutes across the peninsula of Florida. The intent is to generate products that enhance short-range weather forecasts issued in support of NWS MLB and SMG operational requirements within East Central Florida. The current LDIS uses the Advanced Regional Prediction System (ARPS) Data Analysis System (ADAS) package as its core, which integrates a wide variety of national, regional, and local observational data sets. It assimilates all available real-time data within its domain and is run at a finer spatial and temporal resolution than current national- or regional-scale analysis packages. As such, it provides local forecasters with a more comprehensive and complete understanding of evolving fine-scale weather features. Recent efforts have been undertaken to update the LDIS through the formal tasking process of NASA's Applied Meteorology Unit. The goals include upgrading LDIS with the latest version of ADAS, incorporating new sources of observational data, and making adjustments to shell scripts written to govern the system. A series of scripts run a complete modeling system consisting of the preprocessing step, the main model integration, and the post-processing step. The preprocessing step prepares the terrain, surface characteristics data sets, and the objective analysis for model initialization. Data ingested through ADAS include (but are not limited to) Level II Weather Surveillance Radar- 1988 Doppler (WSR-88D) data from six Florida radars, Geostationary Operational Environmental Satellites (GOES) visible and infrared satellite imagery, surface and upper air observations throughout Florida from NOAA's Earth System Research Laboratory/Global Systems Division/Meteorological Assimilation Data Ingest System (MADIS), as well as the Kennedy Space Center ICape Canaveral Air Force Station wind tower network. The scripts provide NWS MLB and SMG with several options for setting a desirable runtime configuration of the LDIS to account for adjustments in grid spacing, domain location, choice of observational data sources, and selection of background model fields, among others. The utility of an improved LDIS will be demonstrated through postanalysis warm and cool season case studies that compare high-resolution model output with and without the ADAS analyses. Operationally, these upgrades will result in more accurate depictions of the current local environment to help with short-range weather forecasting applications, while also offering an improved initialization for local versions of the Weather Research and Forecasting model.

Watson, Leela R.↗

Numerical study of the structural and vibrational properties of amorphous Ta{sub 2}O{sub 5} and TiO{sub 2}-doped Ta{sub 2}O{sub 5}

Using classical molecular dynamics simulations, we synthesized amorphous Ta{sub 2}O{sub 5} and amorphous TiO{sub 2}-doped Ta{sub 2}O{sub 5}. We show that Ta{sub 2}O{sub 5} is composed primarily of six-folded Ta atoms forming octahedra that are either organized in chain-like structures or share edges or faces. When Ta{sub 2}O{sub 5} is doped with TiO{sub 2}, Ti atoms form equally five- and six-folded polyhedra that perturb but do not break the network structure of the glass. Performing a vibrational eigenmode analysis and projecting the eigenmodes on the rocking, stretching, and bending motions of the Ta-2O and Ta-3O bonds, we provide an atomic-scale analysis that substantiates the interpretations of Raman spectra of amorphous Ta{sub 2}O{sub 5}. This eigenmode analysis also reveals the key role played by Ti atoms in the 5 to 12 THz range.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Transport theory and the WKB approximation for interplanetary MHD fluctuations

An alternative approach, based on a multiple scale analysis, is presented in order to reconcile the traditional Wentzel-Kramer-Brillouin (WKB) approach to the modeling of interplanetary fluctuations in a mildly inhomogeneous large-scale flow with a more recently developed transport theory. This enables us to compare directly, at a formal level, the inherent structure of the two models. In the case of noninteracting, incompressible (Alven) waves, the principle difference between the two models is the presence of leading-order couplings (called 'mixing effects') in the non-WKB turbulence model which are absent in a WKB development. Within the context of linearized MHD, two cases have been identified for which the leading order non-WJB 'mixing term' does not vanish at zero wavelength. For these cases the WKB expansion is divergent, whereas the multiple-scale theory is well behaved. We have thus established that the WKB results are contained within the multiple-scale theory, but leading order mixing effects, which are likely to have important observational consequences, can never be recovered in the WKB style expansion. Properties of the higher-order terms in each expansion are also discussed, leading to the conclusion that the non-WKB hierarchy may be applicable even when the scale separation parameter is not small.

Matthaeus, William H.↗

Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography–Mass Spectrometry for High-Throughput Single-Cell Proteomics

Single-cell proteomics can provide critical biological insight into the cellular heterogeneity that is masked by bulk-scale analysis. Here, we have developed a nanoPOTS (nanodroplet processing in one pot for trace samples) platform and demonstrated its broad applicability for single-cell proteomics. However, because of nanoliter-scale sample volumes, the nanoPOTS platform is not compatible with automated LC-MS systems, which significantly limits sample throughput and robustness. To address this challenge, we have developed a nanoPOTS autosampler allowing fully automated sample injection from nanowells to LC-MS systems. We also developed a sample drying, extraction, and loading workflow to enable reproducible and reliable sample injection. The sequential analysis of 20 samples containing 10 ng tryptic peptides demonstrated high reproducibility with correlation coefficients of >0.995 between any two samples. The nanoPOTS autosampler can provide analysis throughput of 9.6, 16, and 24 single cells per day using 120, 60, and 30 min LC gradients, respectively. As a demonstration for single-cell proteomics, the autosampler was first applied to profiling protein expression in single MCF10A cells using a label-free approach. At a throughput of 24 single cells per day, an average of 256 proteins was identified from each cell and the number was increased to 731 when the Match Between Runs algorithm of MaxQuant was used. Using a multiplexed isobaric labeling approach (TMT-11plex), ~77 single cells could be analyzed per day. We analyzed 152 cells from three acute myeloid leukemia cell lines, resulting in a total of 2558 identified proteins with 1465 proteins quantifiable (70% valid values) across the 152 cells. These data showed quantitative single-cell proteomics can cluster cells to distinct groups and reveal functionally distinct differences.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗