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At least 361 records · Page 20

The magnetic field of active region 11158 during the 2011 February 12-17 flares: Differences between photospheric extrapolation and coronal forward-fitting methods

We developed a coronal nonlinear force-free field (COR-NLFFF) forward-fitting code that fits an approximate nonlinear force-free field (NLFFF) solution to the observed geometry of automatically traced coronal loops. In contrast to photospheric NLFFF codes, which calculate a magnetic field solution from the constraints of the transverse photospheric field, this new code uses coronal constraints instead, and this way provides important information on systematic errors of each magnetic field calculation method, as well as on the non-force-freeness in the lower chromosphere. In this study we applied the COR-NLFFF code to NOAA Active Region 11158, during the time interval of 2011 February 12-17, which includes an X2.2 GOES-class flare plus 35 M- and C-class flares. We calculated the free magnetic energy with a 6 minute cadence over 5 days. We find good agreement between the two types of codes for the total nonpotential E{sub N} and potential energy E{sub P} but find up to a factor of 4 discrepancy in the free energy E {sub free} = E{sub N} – E{sub P} and up to a factor of 10 discrepancy in the decrease of the free energy ΔE {sub free} during flares. The coronal NLFFF code exhibits a larger time variability and yields a decrease of free energy during the flare that is sufficient to satisfy the flare energy budget, while the photospheric NLFFF code shows much less time variability and an order of magnitude less free-energy decrease during flares. The discrepancy may partly be due to the preprocessing of photospheric vector data but more likely is due to the non-force-freeness in the lower chromosphere. We conclude that the coronal field cannot be correctly calculated on the basis of photospheric data alone and requires additional information on coronal loop geometries.

79 ASTRONOMY AND ASTROPHYSICS↗

Fitting FFT-derived spectra: Theory, tool, and application to solar radio spike decomposition

Spectra derived from fast Fourier transform (FFT) analysis of time-domain data intrinsically contain statistical fluctuations whose distribution depends on the number of accumulated spectra contributing to a measurement. The tail of this distribution, which is essential for separating the true signal from the statistical fluctuations, deviates noticeably from the normal distribution for a finite number of accumulations. In this paper, we develop a theory to properly account for the statistical fluctuations when fitting a model to a given accumulated spectrum. The method is implemented in software for the purpose of automatically fitting a large body of such FFT-derived spectra. We apply this tool to analyze a portion of a dense cluster of spikes recorded by our FASR Subsystem Testbed instrument during a record-breaking event that occurred on 2006 December 6. The outcome of this analysis is briefly discussed.

79 ASTRONOMY AND ASTROPHYSICS↗

Confirmation via the continuum-fitting method that the spin of the black hole in Cygnus X-1 is extreme

In Gou et al., we reported that the black hole primary in the X-ray binary Cygnus X-1 is a near-extreme Kerr black hole with a spin parameter a{sub *} > 0.95 (3σ). We confirm this result while setting a new and more stringent limit: a{sub *} > 0.983 at the 3σ (99.7%) confidence level. The earlier work, which was based on an analysis of all three useful spectra that were then available, was possibly biased by the presence in these spectra of a relatively strong Compton power-law component: the fraction of the thermal seed photons scattered into the power law was f{sub s} = 23%-31%, while the upper limit for reliable application of the continuum-fitting method is f{sub s} ≲ 25%. We have subsequently obtained six additional spectra of Cygnus X-1 suitable for the measurement of spin. Five of these spectra are of high quality with f{sub s} in the range 10%-19%, a regime where the continuum-fitting method has been shown to deliver reliable results. Individually, the six spectra give lower limits on the spin parameter that range from a{sub *} > 0.95 to a{sub *} > 0.98, allowing us to conservatively conclude that the spin of the black hole is a{sub *} > 0.983 (3σ).

79 ASTRONOMY AND ASTROPHYSICS↗

Spectral observations of Ellerman bombs and fitting with a two-cloud model

We study the Hα and Ca II 8542 Å line spectra of four typical Ellerman bombs (EBs) in the active region NOAA 11765 on 2013 June 6, observed with the Fast Imaging Solar Spectrograph installed at the 1.6 m New Solar Telescope at Big Bear Solar Observatory. Considering that EBs may occur in a restricted region in the lower atmosphere, and that their spectral lines show particular features, we propose a two-cloud model to fit the observed line profiles. The lower cloud can account for the wing emission, and the upper cloud is mainly responsible for the absorption at line center. After choosing carefully the free parameters, we get satisfactory fitting results. As expected, the lower cloud shows an increase of the source function, corresponding to a temperature increase of 400-1000 K in EBs relative to the quiet Sun. This is consistent with previous results deduced from semi-empirical models and confirms that local heating occurs in the lower atmosphere during the appearance of EBs. We also find that the optical depths can increase to some extent in both the lower and upper clouds, which may result from either direct heating in the lower cloud, or illumination by an enhanced radiation on the upper cloud. The velocities derived from this method, however, are different from those obtained using the traditional bisector method, implying that one should be cautious when interpreting this parameter. The two-cloud model can thus be used as an efficient method to deduce the basic physical parameters of EBs.

79 ASTRONOMY AND ASTROPHYSICS↗

TYPE Ia SUPERNOVA DISTANCE MODULUS BIAS AND DISPERSION FROM K-CORRECTION ERRORS: A DIRECT MEASUREMENT USING LIGHT CURVE FITS TO OBSERVED SPECTRAL TIME SERIES

We estimate systematic errors due to K-corrections in standard photometric analyses of high-redshift Type Ia supernovae. Errors due to K-correction occur when the spectral template model underlying the light curve fitter poorly represents the actual supernova spectral energy distribution, meaning that the distance modulus cannot be recovered accurately. In order to quantify this effect, synthetic photometry is performed on artificially redshifted spectrophotometric data from 119 low-redshift supernovae from the Nearby Supernova Factory, and the resulting light curves are fit with a conventional light curve fitter. We measure the variation in the standardized magnitude that would be fit for a given supernova if located at a range of redshifts and observed with various filter sets corresponding to current and future supernova surveys. We find significant variation in the measurements of the same supernovae placed at different redshifts regardless of filters used, which causes dispersion greater than ∼0.05 mag for measurements of photometry using the Sloan-like filters and a bias that corresponds to a 0.03 shift in w when applied to an outside data set. To test the result of a shift in supernova population or environment at higher redshifts, we repeat our calculations with the addition of a reweighting of the supernovae as a function of redshift and find that this strongly affects the results and would have repercussions for cosmology. We discuss possible methods to reduce the contribution of the K-correction bias and uncertainty.

79 ASTRONOMY AND ASTROPHYSICS↗

MODELING THE NONLINEAR CLUSTERING IN MODIFIED GRAVITY MODELS. I. A FITTING FORMULA FOR THE MATTER POWER SPECTRUM OF f(R) GRAVITY

Based on a suite of N-body simulations of the Hu-Sawicki model of f(R) gravity with different sets of model and cosmological parameters, we develop a new fitting formula with a numeric code, MGHalofit, to calculate the nonlinear matter power spectrum P(k) for the Hu-Sawicki model. We compare the MGHalofit predictions at various redshifts (z ≤ 1) to the f(R) simulations and find that the relative error of the MGHalofit fitting formula of P(k) is no larger than 6% at k ≤ 1 h Mpc{sup –1} and 12% at k in (1, 10] h Mpc{sup –1}, respectively. Based on a sensitivity study of an ongoing and a future spectroscopic survey, we estimate the detectability of a signal of modified gravity described by the Hu-Sawicki model using the power spectrum up to quasi-nonlinear scales.

79 ASTRONOMY AND ASTROPHYSICS↗

Optimization and supervised machine learning methods for fitting numerical physics models without derivatives

Here, we address the calibration of a computationally expensive nuclear physics model for which derivative information with respect to the fit parameters is not readily available. Of particular interest is the performance of optimization-based training algorithms when dozens, rather than millions or more, of training data are available and when the expense of the model places limitations on the number of concurrent model evaluations that can be performed. As a case study, we consider the Fayans energy density functional model, which has characteristics similar to many model fitting and calibration problems in nuclear physics. We analyze hyperparameter tuning considerations and variability associated with stochastic optimization algorithms and illustrate considerations for tuning in different computational settings.

97 MATHEMATICS AND COMPUTING↗

Fitting methods for baryon acoustic oscillations in the Lyman-α forest fluctuations in BOSS data release 9

We describe fitting methods developed to analyze fluctuations in the Lyman-α forest and measure the parameters of baryon acoustic oscillations (BAO). We apply our methods to BOSS Data Release 9. Our method is based on models of the three-dimensional correlation function in physical coordinate space, and includes the effects of redshift-space distortions, anisotropic non-linear broadening, and broadband distortions. We allow for independent scale factors along and perpendicular to the line of sight to minimize the dependence on our assumed fiducial cosmology and to obtain separate measurements of the BAO angular and relative velocity scales. Our fitting software and the input files needed to reproduce our main BOSS Data Release 9 results are publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗

Measuring the Kerr spin parameter of a non-Kerr compact object with the continuum-fitting and the iron line methods

Under the assumption that astrophysical black hole candidates are the Kerr black holes of general relativity, the continuum-fitting method and the analysis of the Kα iron line are today the only available techniques capable of providing a relatively reliable estimate of the spin parameter of these objects. If we relax the Kerr black hole hypothesis and we try to test the nature of black hole candidates, we find that there is a strong correlation between the measurement of the spin and possible deviations from the Kerr solution. The properties of the radiation emitted in a Kerr spacetime with spin parameter a{sub *} are indeed very similar, and practically indistinguishable, from the ones of the radiation emitted around a non-Kerr object with different spin. In this paper, I address the question whether measuring the Kerr spin with both the continuum-fitting method and the Kα iron line analysis of the same object can be used to claim the Kerr nature of the black hole candidate in the case of consistent results. In this work, I consider two non-Kerr metrics and it seems that the answer does depend on the specific background. The two techniques may either provide a very similar result (the case of the Bardeen metric) or show a discrepancy (Johannsen-Psaltis background)

79 ASTRONOMY AND ASTROPHYSICS↗

The effects of continuum fitting on Lyman-α forest correlations

Correlations of fluctuations of the flux in Lyman-α forests of high-redshift quasars have been observed by the Baryonic Acoustic Oscillation Spectroscopy Survey (BOSS) and the Dark Energy Spectroscopy Instrument (DESI) survey where they have revealed the effects of baryon acoustic oscillations (BAO). In order to fit the correlation functions to a physical model and thereby constrain cosmological parameters, it is necessary to take into account the effects of fitting the observed spectra to a template about which the fluctuations are measured. In this paper we use mock spectra to test the distortion matrix technique that has been used since the final BOSS data release to appropriately distort the models. We show that while percent-level effects on the derived forest bias parameters may be present, the technique works sufficiently well that the determination of the BAO peak position is not affected at the percent level. We introduce modifications in the technique used by DESI that were not in the original applications and suggest further possibilities for improvements.

Lyman alpha forest↗

A HYBRID MODE MODEL OF THE BLAZHKO EFFECT, SHOWN TO ACCURATELY FIT KEPLER DATA FOR RR Lyr

The waveform for Blazhko stars can be substantially different during the ascending and descending parts of the Blazhko cycle. A hybrid model, consisting of two component oscillators of the same frequency, is proposed as a means to fit the data over the entire cycle. One component exhibits a sawtooth-like velocity waveform while the other is nearly sinusoidal. One method of generating such a hybrid is presented: a nonlinear model is developed for the first overtone mode, which, if excited to large amplitude, is found to drop strongly in frequency and become highly non-sinusoidal. If the frequency drops sufficiently to become equal to the fundamental frequency, the two can become phase locked and form the desired hybrid. A relationship is assumed between the hybrid mode velocity and the observed light curve, which is approximated as a power series. An accurate fit of the hybrid model is made to actual Kepler data for RR Lyr. The sinusoidal component may tend to stabilize the period of the hybrid which is found in real Blazhko data to be extremely stable. It is proposed that the variations in amplitude and phase might result from a nonlinear interaction with a third mode, possibly a nonradial mode at 3/2 the fundamental frequency. The hybrid model also applies to non-Blazhko RRab stars and provides an explanation for the light curve bump. A method to estimate the surface gravity is also proposed.

79 ASTRONOMY AND ASTROPHYSICS↗

BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments

Rule-based models are analyzed with specialized simulators, such as those provided by the BioNetGen and NFsim open-source software packages. Here in this paper, we present BioNetFit, a general-purpose fitting tool that is compatible with BioNetGen and NFsim. BioNetFit is designed to take advantage of distributed computing resources. This feature facilitates fitting (i.e. optimization of parameter values for consistency with data) when simulations are computationally expensive.

59 BASIC BIOLOGICAL SCIENCES↗

Precision Local Burnup Assessment Through Dynamic Peak Fitting in Atom Probe Tomography for Depleted, Enriched, and Irradiated Metallic and Ceramic Fuels

Abstract Burnup estimation in nuclear fuels is vital for evaluating fuel performance, transportation, and safe fuel storage. Accurate assessments of burnup from service period and spent fuels involve tracking the consumption of fissile isotopes of uranium (U) offering a direct insight into energy changes within the fuels especially for thermal spectrum reactors. In current approach, mass spectroscopic technique in atom probe tomography (APT) is utilized for accurate quantification of U isotopes. Quantification of U peaks in mass spectrum is performed on asymmetric shapes due to delayed signals, known as thermal tails, particularly for poorly conducting samples analyzed in laser mode. In this study, we introduce a novel quantification tool for isotopic analysis from APT datasets by developing a fitting algorithm based on shapes of the peaks. A MATLAB-based dynamic peak fitting toolbox is developed and designed to adapt to various peak shapes, ensuring accurate quantification of U isotopes. The effectiveness of this approach is demonstrated in standard Ni-Cr sample, depleted and enriched U samples, and U-based fuels with different burnup levels. The viability of this approach for isotopic quantification is demonstrated on both metallic and ceramic fuels.

Burnup↗

Dark Energy Survey year 3 results: covariance modelling and its impact on parameter estimation and quality of fit

ABSTRACT We describe and test the fiducial covariance matrix model for the combined two-point function analysis of the Dark Energy Survey Year 3 (DES-Y3) data set. Using a variety of new ansatzes for covariance modelling and testing, we validate the assumptions and approximations of this model. These include the assumption of Gaussian likelihood, the trispectrum contribution to the covariance, the impact of evaluating the model at a wrong set of parameters, the impact of masking and survey geometry, deviations from Poissonian shot noise, galaxy weighting schemes, and other sub-dominant effects. We find that our covariance model is robust and that its approximations have little impact on goodness of fit and parameter estimation. The largest impact on best-fitting figure-of-merit arises from the so-called fsky approximation for dealing with finite survey area, which on average increases the χ2 between maximum posterior model and measurement by $3.7{{\ \rm per\ cent}}$ (Δχ2 ≈ 18.9). Standard methods to go beyond this approximation fail for DES-Y3, but we derive an approximate scheme to deal with these features. For parameter estimation, our ignorance of the exact parameters at which to evaluate our covariance model causes the dominant effect. We find that it increases the scatter of maximum posterior values for Ωm and σ8 by about $3{{\ \rm per\ cent}}$ and for the dark energy equation-of-state parameter by about $5{{\ \rm per\ cent}}$.

79 ASTRONOMY AND ASTROPHYSICS↗

Eight new luminous z ≥ 6 quasars discovered via SED model fitting of VISTA, WISE and Dark Energy Survey Year 1 observations

We present the discovery and spectroscopic confirmation with the ESO NTT and Gemini South telescopes of eight new 6.0 < z < 6.5 quasars with z$_{AB}$ < 21.0. These quasars were photometrically selected without any star-galaxy morphological criteria from 1533 deg$^{2}$ using SED model fitting to photometric data from the Dark Energy Survey (g, r, i, z, Y), the VISTA Hemisphere Survey (J, H, K) and the Wide-Field Infrared Survey Explorer (W1, W2). The photometric data was fitted with a grid of quasar model SEDs with redshift dependent Lyman-{\alpha} forest absorption and a range of intrinsic reddening as well as a series of low mass cool star models. Candidates were ranked using on a SED-model based $\chi^{2}$-statistic, which is extendable to other future imaging surveys (e.g. LSST, Euclid). Our spectral confirmation success rate is 100% without the need for follow-up photometric observations as used in other studies of this type. Combined with automatic removal of the main types of non-astrophysical contaminants the method allows large data sets to be processed without human intervention and without being over run by spurious false candidates. We also present a robust parametric redshift estimating technique that gives comparable accuracy to MgII and CO based redshift estimators. We find two z $\sim$ 6.2 quasars with HII near zone sizes < 3 proper Mpc which could indicate that these quasars may be young with ages < 10$^6$ - 10$^7$ years or lie in over dense regions of the IGM. The z = 6.5 quasar VDESJ0224-4711 has J$_{AB}$ = 19.75 is the second most luminous quasar known with z > 6.5.

79 ASTRONOMY AND ASTROPHYSICS↗

Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron

Abstract New variants of SARS-CoV-2 show remarkable heterogeneity in their relative fitness over both time and space. In this paper we extend the tools available for estimating the selection strength for new SARS-CoV-2 variants to a hierarchical, mixed-effects, renewal equation model. This formulation allows us to estimate selection effects at the global level while incorporating both measured and unmeasured heterogeneity among countries. Applying this model to the spread of Omicron in forty countries, we find evidence for very strong but very heterogeneous selection effects. To test whether this heterogeneity is explained by differences in the immune landscape, we considered several measures of vaccination rates and recent population-level infection as covariates, finding moderately strong, statistically significant effects. We also found a significant positive correlation between the selection advantage of Delta and Omicron at the country level, suggesting that other region-specific explanatory variables of fitness differences do exist. Our method is implemented in the Stan programming language, can be run on standard consumer-grade computing resources, and will be straightforward to apply to future variants.

59 BASIC BIOLOGICAL SCIENCES↗

Approximate Hessian for accelerating ab initio structure relaxation by force fitting

We present a method to approximate the Hessian matrix of the Born-Oppenheimer energy landscape by using a simple force field model whose parameters are fitted to on-the-flight ab initio results. The inversed Hessian matrix is used as the preconditioner of conjugate gradient algorithms to speed up the atomic structure relaxation, resulting in a speedup factor of 2 to 5 on systems of bulk, slab, sheets, and atomic clusters. Because the force field model employed is simple and general, the parameter fitting is straightforward; the method is applicable to a variety of complicated systems for minimum structure relaxation. In the metal cluster new structure search, the new method yields better structures than the one obtained before with conventional algorithms.

36 MATERIALS SCIENCE↗

mBEEF-vdW: Robust fitting of error estimation density functionals

Here, we propose a general-purpose semilocal/nonlocal exchange-correlation functional approximation, named mBEEF-vdW. The exchange is a meta generalized gradient approximation, and the correlation is a semilocal and nonlocal mixture, with the Rutgers-Chalmers approximation for van der Waals (vdW) forces. The functional is fitted within the Bayesian error estimation functional (BEEF) framework. We improve the previously used fitting procedures by introducing a robust MM-estimator based loss function, reducing the sensitivity to outliers in the datasets. To more reliably determine the optimal model complexity, we furthermore introduce a generalization of the bootstrap 0.632 estimator with hierarchical bootstrap sampling and geometric mean estimator over the training datasets. Using this estimator, we show that the robust loss function leads to a 10% improvement in the estimated prediction error over the previously used least-squares loss function. The mBEEF-vdW functional is benchmarked against popular density functional approximations over a wide range of datasets relevant for heterogeneous catalysis, including datasets that were not used for its training. Overall, we find that mBEEF-vdW has a higher general accuracy than competing popular functionals, and it is one of the best performing functionals on chemisorption systems, surface energies, lattice constants, and dispersion. We also show the potential-energy curve of graphene on the nickel(111) surface, where mBEEF-vdW matches the experimental binding length. mBEEF-vdW is currently available in gpaw and other density functional theory codes through Libxc, version 3.0.0.

36 MATERIALS SCIENCE↗