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At least 361 records · Page 20

A Range and Performance Optimized Version of the Computer-Aided Speckle Interferometry Algorithm for Real-Time Displacement-Strain Field Monitoring

Abstract This work presents an optimized implementation of the Computer-Aided Speckle Interferometry algorithm which enables full-field determination of displacements and strains on commodity Graphics Processing Units at high resolution and frame rates. By combining careful control of the average speckle size in a laser speckle pattern with a simple sampling rate conversion scheme, a compact representation of the optical speckle is achieved. This allows for optimal use of Graphics Processing Unit architecture with robust range extension. The optimal mapping of the Computer-Aided Speckle Interferometry algorithm to Graphics Processing Unit architecture is shown in detail, and a straightforward method for disambiguating large displacements is illustrated. Lastly, this paper demonstrates a two-step subimage-tapering modification to the original algorithm that enables robust range enhancement while maintaining resolution. Results from numerical simulations on synthetic speckle patterns are shown, and runtime performance metrics are provided, with performance ranging up to 60 frames per second in some cases. The method is suitable for interactive experimental mechanics research, process and testing or any application where real-time high-resolution displacement-strain monitoring is needed. A .NET Framework class library enabling the incorporation of the algorithm into 3rd -party applications is available for download.

42 ENGINEERING↗

Bimetallic Electrocatalysts for CO 2 Reduction

The increasing concentration of CO 2 in the atmosphere has caused various environmental issues. Utilizing CO 2 as the carbon feedstock to replace traditional fossil sources in commodity chemical production could be a potential solution to reduce CO 2 emissions. Electrochemical reduction of CO 2 has attracted much attention because it not only converts CO 2 into a variety of useful chemicals under mild reaction conditions but also can be powered by renewable electricity at remote locations. From this review article, we summarize recent literature works on the topic of bimetallic electrocatalysts for CO 2 reduction. Both selectivity and activity of bimetallic catalysts strongly depend on their compositions and surface structures. Tuning the properties of a bimetallic catalyst could result in a wide range of products, including carbon monoxide, hydrocarbons, carboxylate and liquid oxygenates. Here, by reviewing recent research efforts in the field of bimetallic electrocatalysts for CO 2 reduction, we aim to provide the community with a timely overview of current status of bimetallic CO 2 electrocatalysts and to stimulate new ideas to design better catalysts for more efficient CO 2 electrolysis processes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Chapter Eight - Optimizing Metabolic Pathways for the Improved Production of Natural Products

Metabolic engineering strives to develop microbial strains that are capable of high-titer production of a variety of industrially significant pharmaceuticals, nutraceuticals, commodity, and high-value compounds. Despite extensive success with many proof-of-concept systems there is still the need for optimization to achieve industrially relevant titers, yields, and productivities. Furthermore, the field of metabolic pathway optimization and balancing has formed to address this need using a scientific and systematic approach. In this chapter, we aim to outline various pathway optimization and system balancing strategies while giving insights and tips into the systems and procedures that have demonstrated recent success in the peer-reviewed literature.

59 BASIC BIOLOGICAL SCIENCES↗

A coupled hydrologic-agroeconomic modeling framework to evaluate adaptive irrigation strategies under groundwater withdrawal restrictions

Growing groundwater scarcity requires integrated tools to capture interactions among hydrology, agricultural production, markets, and land use. This study presents an iterative modeling framework that couples hydrologic, crop-yield, and economic models to capture two-way feedback among water availability, agricultural production, and market responses under groundwater constraints. The primary goal of this paper is to describe the methodological development of the coupled framework and demonstrate the significance of iterative model interaction. Applied to the western United States, we evaluated adaptive responses to restricting groundwater use beyond recharge levels, represented through changes in irrigation management and expansion or shrinkage of crop markets through land reallocation. Results demonstrate that the iterative coupling converges to stable equilibrium responses within 10 iterations. At equilibrium, deficit irrigation emerges as the dominant adaptation strategy in California, with irrigation levels stabilizing at approximately 70% of full irrigation demand, while Arizona and New Mexico experience stronger yield sensitivities. Early iterations produce commodity price increases of up to 10% for fruit and vegetable crops; however, these responses moderate as land allocation and production patterns adjust across regions. Deficit irrigation and spatial reallocation of irrigated land partially offset production losses, with variability observed across different states: California maintains yields primarily via deficit irrigation, whereas Arizona and New Mexico will rely mainly on reducing irrigated area to absorb the shock. By capturing feedback between biophysical and economic processes, this approach highlights how irrigation strategies and land-use decisions evolve under water stress and provides a transferable platform for evaluating water management policies.

54 ENVIRONMENTAL SCIENCES↗

Facile processing of Microchloropsis salina biomass for phosphate recycle

Algal biomass is a conferred feedstock for sustainable production of petroleum displacing commodities. Yet, production of 10% of US demand for liquid transportation fuel from algae would require a 60–150% increase over current agricultural demand for phosphorus fertilizers. Without efforts to recycle major nutrients, algal biomass production can be expected to catalyze a food versus fuel crisis. We have created a novel and simple process for efficient liberation of phosphate from algal biomass and have demonstrated recycling at both laboratory and pilot scale, of up to 70% of total cellular phosphate from osmotically-shocked but non-denatured Microchloropsis salina biomass using a range of mild incubation conditions. The phosphate released in this process is bioavailable, can support the same level of algal growth as standard nutrients, and does not contain any growth inhibitory compounds as evidenced by its ability to support multiple sequential cycles of growth and remineralization.

59 BASIC BIOLOGICAL SCIENCES↗

Reused cultivation water from a self-inhibiting alga does not inhibit other algae but alters their microbiomes

Economical production of algal commodities (food, feed, and fuels) requires reusing cultivation water to reduce operating costs. While some algae strains show growth inhibition in reused water, other strains appear un-affected. Reusing water to grow different strains (i.e., crop rotation) could potentially improve overall biomass production compared to water reuse with the same strain by reducing accumulation of strain-specific waste products, limiting carryover of population-specific pathogens such as viruses, and introducing bacteria that degrade residual organic matter. Here, batch culture experiments tested the effects of reused cultivation water from the self-inhibiting diatom Staurosira sp. C323 on the diatom Navicula sp. SFP and green alga Chlorella sp. D046, as well as their microbiomes. Navicula sp. and Chlorella sp. grew well in Staurosira sp. reused water, indicating that previously observed self-inhibition was likely specific to this Staurosira strain. While algal mi-crobiomes were not significantly different between controls and reused water treatments, specific bacteria taxa were differentially abundant in reused treatments, suggesting that some taxa responded to compounds re-maining in the reused water. Finally, results suggest that algae growth responses in reused water may depend largely on strain-specific factors, and that crop rotation can support biomass production.

09 BIOMASS FUELS↗

Life cycle greenhouse gas emissions of hydrogen fuel production from chlor-alkali processes in the United States

By-product hydrogen from chlor-alkali processes can help meet the increasing demand for hydrogen fuel in early fuel cell electric vehicle markets (e.g., California) in the U.S. Hydrogen produced from chlor-alkali plants is typically combusted for process heat on site, vented to the atmosphere (i.e., wasted), or sold to the external merchant hydrogen market. Whether it is combusted, vented, or sold as a commodity, relevant information is lacking as to the life-cycle environmental benefits or trade-offs of using by-product hydrogen from chlor-alkali plants. A life-cycle analysis framework was employed to evaluate well-to-gate greenhouse gas (GHG) emissions associated with by-product hydrogen from chlor-alkali processes in comparison with hydrogen from the conventional centralized natural gas steam methane reforming (central SMR) pathway. U.S.-specific, plant-by-plant, and up-to-date chlor-alkali production characteristics were incorporated into the analysis. In addition to the venting and combustion scenarios, to deal with the multi-functionality of the chlor-alkali processes that simultaneously produce chlorine, sodium hydroxide, and hydrogen, two different co-product allocation strategies were adopted mass allocation and market value allocation. It was estimated that by-product hydrogen production from chlor-alkali processes creates 1.3-9.8 kg CO 2 e/kg H 2 of life-cycle GHG emissions on average, which is 20-90% less than the conventional central SMR pathway. The results vary with co-product treatment scenarios, regional electric grid characteristics, on-site power generation, product prices, and hydrogen yield. Despite the variations in the results, it was concluded that the life-cycle GHG emission reduction benefits of using by-product hydrogen from chlor-alkali processes are robust. In conclusion, with a diverse set of scenario analyses, the study developed a comprehensive and detailed life-cycle GHG emissions inventory of the chlor-alkali by-product hydrogen pathway and quantified sensitivity indices in the context of different assumptions and input parameter values.

08 HYDROGEN↗

Dynamic Linking of Upstream Energy and Freight Demands for Bio and Fossil Energy Pathways in the Global Change Analysis Model

Comprehensive study of the environmental impacts associated with demand for an energy resource or carrier in any one sector requires a full consideration of the direct and indirect impacts on the rest of the regional and global energy system. It is important to consider the energy that is consumed in producing primary energy resources and energy consumed in transporting these energy resources internationally and domestically in order to produce a complete picture of these impacts. Biofuels are especially complex since they have feedbacks not just to the energy system but also to regional and global crop markets. Different modeling and analysis strategies have been applied to consider these impacts, which occur “upstream” of final energy consumption, with some success. Traditional life cycle models allow for rich technological detail in linking upstream impacts of energy demand with downstream final consumption; however, they cannot by themselves represent dynamic economic feedbacks across multiple sectors and regions over time. Computable general equilibrium (CGE) modeling does account for economic feedback among all sectors and regions; however, CGE modeling does not lend itself to physical representation of technological detail. Partial equilibrium (PE) modeling is a heterogeneous category describing economic models that focus on a subset of the economy, and they differ in coverage and ease in incorporating more sectors and economic links. In this study, we present a strategy for dynamically including the direct and indirect impacts of energy demand with physical and technology detail by explicitly adding these upstream energy and transportation links to GCAM, a PE model of global energy, land use, and emissions. We incorporate the following inter-sectoral linkages: energy inputs to crop production, energy inputs to fossil resource production, and freight transport requirements of energy and agricultural commodities. We assess the implications of explicitly including these links by measuring the global impacts of increased corn ethanol demand in the United States with and without these links included. Although the net global impact of the upstream links on energy and emissions are relatively modest in the scenarios we studied, the inclusion of these links illustrates interesting trade-offs in energy and transportation demand among fossil fuel and agriculture sectors. These sectoral interactions suggest that this level of modeling detail could be important in evaluating future analytical questions.

Sampedro Martinez de Estivariz, Jon↗

Low-mass molecular dynamics simulation: A simple and generic technique to enhance configurational sampling

Highlights: • Reducing atomic masses by 10-fold vastly improves sampling in MD simulations. • CLN025 folded in 4 of 10 × 0.5-μs MD simulations when masses were reduced by 10-fold. • CLN025 folded as early as 96.2 ns in 1 of the 4 simulations that captured folding. • CLN025 did not fold in 10 × 0.5-μs MD simulations when standard masses were used. • Low-mass MD simulation is a simple and generic sampling enhancement technique. - Abstract: CLN025 is one of the smallest fast-folding proteins. Until now it has not been reported that CLN025 can autonomously fold to its native conformation in a classical, all-atom, and isothermal–isobaric molecular dynamics (MD) simulation. This article reports the autonomous and repeated folding of CLN025 from a fully extended backbone conformation to its native conformation in explicit solvent in multiple 500-ns MD simulations at 277 K and 1 atm with the first folding event occurring as early as 66.1 ns. These simulations were accomplished by using AMBER forcefield derivatives with atomic masses reduced by 10-fold on Apple Mac Pros. By contrast, no folding event was observed when the simulations were repeated using the original AMBER forcefields of FF12SB and FF14SB. The results demonstrate that low-mass MD simulation is a simple and generic technique to enhance configurational sampling. This technique may propel autonomous folding of a wide range of miniature proteins in classical, all-atom, and isothermal–isobaric MD simulations performed on commodity computers—an important step forward in quantitative biology.

60 APPLIED LIFE SCIENCES↗

Aeration costs in stirred-tank and bubble column bioreactors

To overcome knowledge gaps in the economics of large-scale aeration for production of commodity products, Aspen Plus is used to simulate steady-state oxygen delivery in both stirred-tank and bubble column bioreactors, using published engineering correlations for oxygen mass transfer as a function of aeration rate and power input, coupled with new equipment cost estimates developed in Aspen Capital Cost Estimator and validated against vendor quotations. Here, these simulations describe the cost efficiency of oxygen delivery as a function of oxygen uptake rate and vessel size, and show that capital and operating costs for oxygen delivery drop considerably moving from standard-size (200 m 3 ) to world-class size (500 m 3 ) reactors, but only marginally in further scaling up to hypothetically large (1000 m 3 ) reactors. Finally, this analysis suggests bubble-column reactor systems can reduce overall costs for oxygen delivery by 10-20% relative to stirred tanks at low to moderate oxygen transfer rates up to 150 mmol/L-h.

09 BIOMASS FUELS↗

Biological Valorization of Natural Gas for the Production of Lactic Acid: Techno-Economic Analysis and Life Cycle Assessment

Due to the availability of natural gas, shale gas, and flared gas, there is increased interest in converting methane in these gases into commodity chemicals via cost-effective and sustainable processes. Recently, we have demonstrated an efficient process concept converting methane to lactic acid (LA) by methanotrophic bacteria with high carbon flux, pivoting potentials for commercialization. Herein, we present a first-of-kind conceptual design and a techno-economic analysis (TEA) of a biorefinery process with calculated minimum selling prices. This study includes both sensitivity analysis and scenario analysis for key cost drivers and for projecting path forwards in research and development. The analyses reveal that the conversion efficiency, LA product titer, LA productivity, and gas flow rate have the most significant impacts on cost. The MSP varies from $5.83-$2.17/kg LA depending on these key process attributes. Further, a life cycle assessment of this process concept is evaluated and compared to understand the sustainable aspects. In this TEA study, the bio-upgrading process from natural gas to LA presents a potentially promising approach in terms of the feedstock versatility, economic viability, and environmental impact.

BIOMASS FUELS,NATURAL GAS↗

Analysis of the cyanobacterial amino acid metabolism with a precise genome-scale metabolic reconstruction of Anabaena sp. UTEX 2576

Filamentous cyanobacteria such as Anabaena sp. UTEX 2576 (a.k.a., Nostoc sp. PCC 7120) are a sustainable platform for commodity and specialty chemical production. Anabaena is a model cyanobacterium adopted to study production of nitrogen-containing metabolites useful for chemical, cosmetic, and pharmaceutical industries. Therefore, a precise description of the Anabaena metabolic network is desired to analyze their amino-acid metabolism and elucidate potential applications of these cyanobacteria as host organisms for biotechnological production. Secondary metabolite production depends on the metabolic availability of amino acids. We provide new insight on the biotechnological utilization of Anabaena after predicting phycocyanobilin and amino-acid production rates, using a genome-scale metabolic model (iDN1004). This metabolic reconstruction is a highly comprehensive representation of the global metabolism of Anabaena, which also contains experimental biomass equations and constraints under photoautotrophic and photodiazotrophic growth. Modelling results ranked proteinogenic amino acids based on predicted metabolic fluxes through amino-acid producing reactions. From these, l-aspartate, glycine, l-serine, l-valine, l-alanine, l-threonine, and l-leucine were selected as the best branching points to conduct metabolic engineering, where l-aspartate, l-serine, l-valine and glycine serve as potential precursors of the secondary metabolites Schizokinen (a siderophore), Sphingosine (a ceramide), Lyngbyatoxin A (an alkaloid), and Shinorine (a sunscreen).

59 BASIC BIOLOGICAL SCIENCES↗

Multifunctional landscapes: Site characterization and field-scale design to incorporate biomass production into an agricultural system

Current and future demand for food, feed, fiber, and energy require novel approaches to land management, which demands that multifunctional landscapes are created to integrate various ecosystem functions into a sustainable land use. We developed an approach to design such landscapes at a field scale to minimize concerns of land use change, water quality, and greenhouse gas emissions associated with production of food and bioenergy. This study leverages concepts of nutrient recovery and phytoremediation to place bioenergy crops on the landscape to recover nutrients released to watersheds by commodity crops. Crop placement is determined by evaluating spatial variability of: 1) soils, 2) surface flow pathways, 3) shallow groundwater flow gradients, 4) subsurface nitrate concentrations, and 5) primary crop yield. A 0.8 ha bioenergy buffer was designed within a 6.5 ha field to intercept concentrated surface flow, capture and use nitrate leachate, and minimize use of productive areas. Denitrification-Decomposition (DNDC) simulations show that on average, a switchgrass (Panicum Virgatum L.) or willow (Salix spp.) buffer within this catchment according to this design could reduce annual leached NO3 by 61 or 59% and N2O emission by 5.5 or 10.8%, respectively, produce 8.7 or 9.7 Mg ha-1 of biomass respectively, and displace 6.7 Mg ha-1 of corn (Zea mays L.) grain. Therefore, placement of bioenergy crops has the potential to increase environmental sustainability when the pairing of location and crop type result in minimal disruption of current food production systems and provides additional environmental benefits.

09 BIOMASS FUELS↗

Polar snow algae as a valuable source of lipids?

Microalgae offer excellent opportunities for producing food and fuel commodities, but in colder climates the low growth rates of many varieties may hamper production. In this work, extremophilic Arctic microalgae were tested to establish whether satisfactory growth and lipid production could be obtained at low water temperature. Five species of snow/soil algae originating from Svalbard (78–79°N) were cultivated at 6 °C, reaching high cell densities (maximum dry weight 3.4 g·L –1 ) in batch cultivations, and high productivity (maximum 0.63 g·L –1 ·d –1 ). After 20 days of cultivation total lipids ranged from 28% to 39% of the dry weight, and diverse patterns of neutral lipid (triacylglycerol; TAG) accumulation were observed. The five species largely accumulated unsaturated fatty acyl chains in neutral lipids, especially polyunsaturated C16 series fatty acids, C18:1n-9 and C18:3n-3. Furthermore, the results indicate that polar microalgae could provide an opportunity to increase the yields of microalgal biomass and oil products at low temperatures.

09 BIOMASS FUELS↗

Production of Designer Xylose-Acetic Acid Enriched Hydrolysate from Bioenergy Sorghum, Oilcane, and Energycane Bagasses

Xylan accounts for up to 40% of the structural carbohydrates in lignocellulosic feedstocks. Along with xylan, acetic acid in sources of hemicellulose can be recovered and marketed as a commodity chemical. Through vibrant bioprocessing innovations, converting xylose and acetic acid into high-value bioproducts via microbial cultures improves the feasibility of lignocellulosic biorefineries. Enzymatic hydrolysis using xylanase supplemented with acetylxylan esterase (AXE) was applied to prepare xylose-acetic acid enriched hydrolysates from bioenergy sorghum, oilcane, or energycane using sequential hydrothermal-mechanical pretreatment. Various biomass solids contents (15 to 25%, w/v) and xylanase loadings (140 to 280 FXU/g biomass) were tested to maximize xylose and acetic acid titers. The xylose and acetic acid yields were significantly improved by supplementing with AXE. The optimal yields of xylose and acetic acid were 92.29% and 62.26% obtained from hydrolyzing energycane and oilcane at 25% and 15% w/v biomass solids using 280 FXU xylanase/g biomass and AXE, respectively.

09 BIOMASS FUELS↗

OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution

We present OpenRBC, a coarse-grained molecular dynamics code, which is capable of performing an unprecedented in silico experiment—simulating an entire mammal red blood cell lipid bilayer and cytoskeleton as modeled by multiple millions of mesoscopic particles—using a single shared memory commodity workstation. To achieve this, we invented an adaptive spatial-searching algorithm to accelerate the computation of short-range pairwise interactions in an extremely sparse three-dimensional space. The algorithm is based on a Voronoi partitioning of the point cloud of coarse-grained particles, and is continuously updated over the course of the simulation. The algorithm enables the construction of the key spatial searching data structure in our code, i.e., a lattice-free cell list, with a time and space cost linearly proportional to the number of particles in the system. The position and the shape of the cells also adapt automatically to the local density and curvature. The code implements OpenMP parallelization and scales to hundreds of hardware threads. It outperforms a legacy simulator by almost an order of magnitude in time-to-solution and >40 times in problem size, thus providing, to our knowledge, a new platform for probing the biomechanics of red blood cells.

Biophysics↗