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At least 37 records · Page 2

Differentially Variable Component Analysis (dVCA): Identifying Multiple Evoked Components using Trial-to-Trial Variability

Electric potentials and magnetic fields generated by ensembles of synchronously active neurons in response to external stimuli provide information essential to understanding the processes underlying cognitive and sensorimotor activity. Interpreting recordings of these potentials and fields is difficult as each detector records signals simultaneously generated by various regions throughout the brain. We introduce the differentially Variable Component Analysis (dVCA) algorithm, which relies on trial-to-trial variability in response amplitude and latency to identify multiple components. Using simulations we evaluate the importance of response variability to component identification, the robustness of dVCA to noise, and its ability to characterize single-trial data. Finally, we evaluate the technique using visually evoked field potentials recorded at incremental depths across the layers of cortical area VI, in an awake, behaving macaque monkey.

Knuth, Kevin H.↗

Progressing Analysis of Variable Electric Rates (PAVER) Study

The Progressing Analysis of Variable Electric Rates (PAVER) study analyzed the impact of a range of time-varying electric rates on the performance of a regional electric grid and the resulting costs for participating and non-participating customers. This analysis leveraged and extended the work of PNNL’s Distribution System Operator with Transactive (DSO+T) study. Five different rate designs were included: a flat volumetric energy charge, a typical Time of Use (TOU) rate, a dynamic energy (DE) rate (based on wholesale locational marginal prices), a dynamic energy and capacity (DE+C) rate, and, finally, a Block and Swing (B&S) rate that billed customers based on their average load profile at constant pricing, but used the DE+C dynamic price for load deviations from their average profile. These rates were analyzed in a large-scale co-simulation of an entire regional grid with a customer population representative of the current state. A large fraction (80%) of residential and commercial customers were assumed to participate in these time-varying rates with automatically controlled HVAC, water heaters, electric vehicles, and batteries. This study assumed no industrial sector participation. The DE and DE+C rates saw system peak loads reduced by 6-7%, while the large participation in the TOU rate case saw a significant rebound effect and a resulting peak load increase of >5%. The impacts to the annual and peak system demand impacted system wholesale prices and the overall grid operating costs. This cost structure determined the revenue needed to be collected from customers by each rate design. Participating customers on the DE and DE+C rates (located in one of the modeled DSOs) saw reductions in average annual electricity bills of 11-17% with average increases in monthly bill variation of no more than 13%. At such high participation levels, TOU customers saw 10% higher average annual bills (due to system-wide rebound effects) and average increased monthly bill variation of 16%. Residential owners of large flexible loads (such as electric vehicles) saw larger bill savings (17-20%) when on a fully dynamic rate. The presence of on-site generation (such as rooftop solar) did not appear to appreciably change customer outcomes. Customers on the Block and Swing rate did see 6% lower monthly bill variation (as intended) than the flat rate case, but at the expense of appreciable bill savings, which were only 3%, comparable to the savings seen by non-participants. Given this finding we recommend that additional research be conducted into how best various bill protection mechanisms can balance minimizing customer bill variation with providing financial incentives commensurate with the flexibility customers provide. We also recommend that customer outcomes be explored across a range of regions using current actual customer and system cost data.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

NASA GEOS-3/TRMM Re-analysis: Capturing Observed Tropical Rainfall Variability in Global Analysis for Climate Research

Understanding climate variability over a wide range of space-time scales requires a comprehensive description of the earth system. Global analyses produced by a fixed assimilation system (i.e., re-analyses) - as their quality continues to improve - have the potential of providing a vital tool for meeting this challenge. But at the present time, the usefulness of re-analyses is limited by uncertainties in such basic fields as clouds, precipitation, and evaporation - especially in the tropics, where observations are relatively sparse. Analyses of the tropics have long been shown to be sensitive to. the treatment of cloud precipitation processes, which remains a major source of uncertainty in current models. Yet, for many climate studies it is crucial that analyses can accurately reproduce the observed rainfall intensity and variability since a small error of 1 mm/d in surface rain translates into an error of approx. 30 W/sq m in energy (latent heat) flux. Currently, discrepancies between the observed and analyzed monthly-mean rain rates averaged to 100 km x 100 km resolution can exceed 4 mm/d (or 120 W/sq m ), compared to uncertainties in surface radiative fluxes of approx. 10-20 W/sq m . Improving precipitation in analyses would reduce a major source of uncertainty in the global energy budget. Uncertainties in tropical precipitation have also been a major impediment in understanding how the tropics interact with other regions, including the remote response to El Nino/Southern Oscillation (ENSO) variability on interannual time scales, the influence of Madden-Julian Oscillation (MJO) and monsoons on intraseasonal time scales. A global analysis that can replicate the observed precipitation variability together with physically consistent estimates of other atmospheric variables provides the key to breaking this roadblock. NASA Goddard Space Flight Center has been exploring the use of satellite-based microwave rainfall measurements in improving global analyses and has recently produced a multi-year, 1 x 1 TRMM re-analysis , which assimilates 6-hourly TMI and SSM/I surface rain rates over tropical oceans using a ID variational continuous assimilation (VCA) procedure in the GEOS-3 global data assimilation system. The analysis period extends from 1 November 1997 through 3 1 December 2002. The goal is to produce a multi-year global analysis that is dynamically consistent with available tropical precipitation observations for the community to assess its utility in climate applications and identify areas for further improvements. A distinct feature of the GEOS-3RRMh4 re-analysis is that its precipitation analysis is not derived from a short-term forecast (as done in most operational systems) but is given by a time- continuous model integration constrained by precipitation observations within a 6-h analysis window, while the wind, temperature, and pressure fields are allowed to directly respond to the improved precipitation and associated latent heating structures within the same analysis window. In this talk, I will assess the impact VCA precipitation assimilation on analyses of climate signals ranging from a few weeks to interannual time scales and compare results against other operational and reanalysis products.

Hou, Arthur Y.↗

Variable property analysis - Is there anything to it?

It is shown that the inclusion of variable thermodynamic and transport properties in the analysis of combusting flows qualitatively and quantitatively alters the results. Consideration is given to the following results: single droplet combustion, forced convective turbulent boundary layer combustion, and free convective combustion. In the case of the turbulent boundary layer combustion of solid/liquid fuels, it is shown that the fuel significantly influences the regression rate as it is found in the experiments.

Mukunda, H. S.↗

Analysis of variability in the burst oscillations of the accreting millisecond pulsar XTE J1814-338

The accreting millisecond pulsar XTE J1814-338 exhibits oscillations at the known spin frequency during Type I X-ray bursts. The properties of the burst oscillations reflect the nature of the thermal asymmetry on the stellar surface. We present an analysis of the variability of the burst oscillations of this source, focusing on three characteristics: fractional amplitude, harmonic content and frequency. Fractional amplitude and harmonic content constrain the size, shape and position of the emitting region, whilst variations in frequency indicate motion of the emitting region on the neutron star surface. We examine both long-term variability over the course of the outburst, and short-term variability during the bursts. For most of the bursts, fractional amplitude is consistent with that of the accretion pulsations, implying a low degree of fuel spread. There is however a population of bursts whose fractional amplitudes are substantially lower, implying a higher degree of fuel spread, possibly forced by the explosive burning front of a precursor burst. For the first harmonic, substantial differences between the burst and accretion pulsations suggest that hotspot geometry is not the only mechanism giving rise to harmonic content in the latter. Fractional amplitude variability during the bursts is low; we can only rule out the hypothesis that the fractional amplitude remains constant at the l(sigma) level for bursts that do not exhibit photospheric radius expansion (PRE). There are no significant variations in frequency in any of the bursts except for the one burst that exhibits PRE. This burst exhibits a highly significant but small (= 0.1Hz) drop in frequency in the burst rise. The timescale of the frequency shift is slower than simple burning layer expansion models predict, suggesting that other mechanisms may be at work.

Watts, Anna L.↗

Electrical Submersible Pumps: A System Modeling Approach for Power Quality Analysis With Variable Frequency Drives

This article proposes a high-level engineering guide to develop an integrated system model for power quality analysis in electrical submersible pump (ESP) applications with variable frequency drives (VFDs). Such analyses are troublesome in the industry due to the complexity of these systems. In this article, simple steps to perform system integration analyses of such arrangements, including torsional analysis, are developed. A simplified VFD-ESP model suitable for coupled electrical and mechanical analysis in steady state is proposed in all their configurations of practical interest. Such a model can be easily implemented in common simulation software, significantly reducing engineering efforts for implementation and analysis. The focus of the proposed model is the prediction of ESP failures that might result from a poor power quality caused by VFDs. Analytical expressions of different types of harmonics in these systems, as well as their accurate locations in the frequency domain, including their interharmonics and common-mode harmonics, are derived for this purpose. Further, the effectiveness of the proposed model is verified through offline and real-time hybrid simulation results. Finally, a comparison between simulation results obtained using the proposed model and measurements collected on a down-scale laboratory prototype is carried out to demonstrate the accuracy of the suggested modeling approach.

42 ENGINEERING↗

Conformational space exploration of cryo-EM structures by variability refinement

Cryo-EM observation of biological samples enables visualization of sample heterogeneity, in the form of discrete states that are separable, or continuous heterogeneity as a result of local protein motion before flash freezing. Variability analysis of this continuous heterogeneity describes the variance between a particle stack and a volume, and results in a map series describing the various steps undertaken by the sample in the particle stack. While this observation is absolutely stunning, it is very hard to pinpoint structural details to elements of the maps. Here, in order to bridge the gap between observation and explanation, we designed a tool that refines an ensemble of structures into all the maps from variability analysis. Using this bundle of structures, it is easy to spot variable parts of the structure, as well as the parts that are not moving. Comparison with molecular dynamics simulations highlights the fact that the movements follow the same directions, albeit with different amplitudes. Ligand can also be investigated using this method. Variability refinement is available in the Phenix software suite, accessible under the program name phenix.varref.

59 BASIC BIOLOGICAL SCIENCES↗

Optimal Synthesis of Compliant Mechanisms using Subdivision and Commercial FEA (DETC2004-57497)

The field of distributed-compliance mechanisms has seen significant work in developing suitable topology optimization tools for their design. These optimal design tools have grown out of the techniques of structural optimization. This paper will build on the previous work in topology optimization and compliant mechanism design by proposing an alternative design space parameterization through control points and adding another step to the process, that of subdivision. The control points allow a specific design to be represented as a solid model during the optimization process. The process of subdivision creates an additional number of control points that help smooth the surface (for example a C(sup 2) continuous surface depending on the method of subdivision chosen) creating a manufacturable design free of some traditional numerical instabilities. Note that these additional control points do not add to the number of design parameters. This alternative parameterization and description as a solid model effectively and completely separates the design variables from the analysis variables during the optimization procedure. The motivation behind this work is to create an automated design tool from task definition to functional prototype created on a CNC or rapid-prototype machine. This paper will describe the proposed compliant mechanism design process and will demonstrate the procedure on several examples common in the literature.

Hull, Patrick V.↗

Dust around Mira variables: An analysis of IRAS LRS spectra

The spatial extent and spectral appearance of the thin dust shell around Mira variables is determined largely by the dust absorptivity, Q(sub abs)(lambda), and the dust condensation temperature T(sub cond). Both Q(sub abs)(lambda) and T(sub cond) are extracted from IRAS low-resolution spectra (LRS) spectra. In order to do this, the assumption that the ratio of total power in the 10 micron feature to that in the 20 micron feature should be equal to that measured in other amorphous silicates (e.g., synthesized amorphous Mg2SiO4). It was found that T(sub cond) decreases with decreasing strength of the 10 micron feature, from T(sub cond) = 1000 K to 500 K (estimated error 20 percent). A value for the near-infrared dust absorptivity could not be determined. Although this parameter strongly affects the condensation radius, it hardly affects the shape of the LRS spectrum (as long as the optically thin approximation is valid), because it scales the spatial distribution of the dust. Information on the magnitude of the near-infrared dust absorptivity may be deduced from the unique carbon star BM Gem. This star has a LRS spectrum with silicate features indication an inner dust shell temperature of at least 1000 K. However, on the basis of observations in the 1920s-30s one may infer an inner dust shell radius of at least 6x10(exp 12)m. To have this high temperature at such a large distance, the near-infrared absorptivity of the dust must be high.

Slijkhuis, S.↗

Computational analysis of Variable Thrust Engine (VTE) performance

The Variable Thrust Engine (VTE) of the Orbital Maneuvering Vehicle (OMV) uses a hypergolic propellant combination of Monomethyl Hydrazine (MMH) and Nitrogen Tetroxide (NTO) as fuel and oxidizer, respectively. The performance of the VTE depends on a number of complex interacting phenomena such as atomization, spray dynamics, vaporization, turbulent mixing, convective/radiative heat transfer, and hypergolic combustion. This study involved the development of a comprehensive numerical methodology to facilitate detailed analysis of the VTE. An existing Computational Fluid Dynamics (CFD) code was extensively modified to include the following models: a two-liquid, two-phase Eulerian-Lagrangian spray model; a chemical equilibrium model; and a discrete ordinate radiation heat transfer model. The modified code was used to conduct a series of simulations to assess the effects of various physical phenomena and boundary conditions on the VTE performance. The details of the models and the results of the simulations are presented.

Giridharan, M. G.↗

Dissecting the metabolic reprogramming of maize root under nitrogen-deficient stress conditions

The growth and development of maize (Zea mays L.) largely depends on its nutrient uptake through the root. Hence, studying its growth, response, and associated metabolic reprogramming to stress conditions is becoming an important research direction. A genome-scale metabolic model (GSM) for the maize root was developed to study its metabolic reprogramming under nitrogen stress conditions. The model was reconstructed based on the available information from KEGG, UniProt, and MaizeCyc. Transcriptomics data derived from the roots of hydroponically grown maize plants were used to incorporate regulatory constraints in the model and simulate nitrogen-non-limiting (N+) and nitrogen-deficient (N-) condition. Model-predicted flux-sum variability analysis achieved 70% accuracy compared with the experimental change of metabolite levels. In addition to predicting important metabolic reprogramming in central carbon, fatty acid, amino acid, and other secondary metabolism, maize root GSM predicted several metabolites (l-methionine, l-asparagine, l-lysine, cholesterol, and l-pipecolate) playing a regulatory role in the root biomass growth. Furthermore, this study revealed eight phosphatidylcholine and phosphatidylglycerol metabolites which, even though not coupled with biomass production, played a key role in the increased biomass production under N-deficient conditions. Overall, the omics-integrated GSM provides a promising tool to facilitate stress condition analysis for maize root and engineer better stress-tolerant maize genotypes.

Plant Sciences↗

Application of the metabolic modeling pipeline in KBase to categorize reactions, predict essential genes, and predict pathways in an isolate genome

The DOE Systems Biology Knowledgebase (KBase) platform offers a range of powerful tools for the reconstruction, refinement, and analysis of genome-scale metabolic models built from microbial isolate genomes. In this chapter, we describe and demonstrate these tools in action with an analysis of isoprene production in the Bacillus subtilis DSM genome. Two different methods are applied to build initial metabolic models for the DSM genome, then the models are gapfilled in three different growth conditions. Next, flux balance analysis (FBA) and flux variability analysis (FVA) techniques are applied to both study the growth of these models in minimal media and classify reactions within each model based on essentiality and functionality. The models are applied with the FBA method to predict essential genes, which are then compared to an updated list of essential genes obtained for B. subtilis 168, a very similar strain to the DSM isolate. The models are also applied to simulate Biolog growth conditions, and these results are compared with Biolog data collected for B. subtilis 168. Finally, the DSM metabolic models are applied to explore the pathways and genes responsible for producing isoprene in this strain. These studies demonstrate the accuracy and utility of models generated from the KBase pipelines, as well as exploring the tools available for analyzing these models.

DOE knowledgebase↗

Combined Raman and Turbidity Probe for Real-Time Analysis of Variable Turbidity Streams

We know that real-time and in situ process monitoring is a powerful tool that can empower operators of hazardous processes to better understand and control their chemical systems without increased risk to themselves. However, applying monitoring techniques to complex chemical processes can face challenges. An example of this is the application of optical spectroscopy, otherwise capable of providing detailed chemical composition information, to processes exhibiting variable turbidity. Here, details on a novel combined Raman spectroscopy and turbidimetry probe are discussed. Furthermore, the analytical approach to accurately account for both Raman signal and turbidity while quantifying chemical targets is detailed. Through leveraging Raman and turbidity data simultaneously collected from the combined probe within chemometric models, accurate quantification of multiple chemical targets can be achieved under conditions of variable concentrations and turbidity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Multi-Variable Parametric Analysis of Prototype Building Energy Performance Using Current and Future Weather Scenarios For Data-Driven Market Transformation Support

This project aimed to develop a public building simulation data set that may be used to inform building code development and guidelines for building innovation. The data set consists of several common building types and many representative locations across the United States. A parametric design of building properties was developed to create a range of building energy models that represent common building design decisions with a particular focus on fenestration options. The US Department of Energy prototype building energy models were altered according to a parametric building design and simulated using both current weather data and future weather estimates derived from global climate models. The resulting data set allows for pertinent exploration of building design parameters, including fenestration, within different environments across the United States in the broader context of climate change.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Fatigue damage analysis under variable amplitude cycling

This paper explores the suitability of a recently proposed mean stress parameter and introduces a nonlinear damage accumulation procedure. Data covering a range of positive and negative stress ratios from +0.6 to -2.66, for several aluminum alloys and steels, are assembled and shown to be well correlated by a simple damage parameter. A nonlinear damage accumulation postulate is advanced to replace the usual linear procedure. Results of critical experiments performed to assess the suitability of the postulate are introduced and shown to support a non-linear criterion. The implications of this work related to variable amplitude life prediction are discussed.

Leis, B. N.↗

Design options and analysis of variable gravity systems in space

Design options for tethered systems which can produce a variable gravity living environment in space are discussed. Parameters of rotating systems are reviewed, and early studies of rotating systems are recalled. Artificial gravity configurations are shown and their individual advantages and disadvantages are examined.

Penzo, Paul A.↗

Application of the Metabolic Modeling Pipeline in KBase to Categorize Reactions, Predict Essential Genes, and Predict Pathways in an Isolate Genome

The DOE Systems Biology Knowledgebase (KBase) platform offers a range of powerful tools for the reconstruction, refinement, and analysis of genome-scale metabolic models built from microbial isolate genomes. In this chapter, we describe and demonstrate these tools in action with an analysis of isoprene production in the Bacillus subtilis DSM genome. Two different methods are applied to build initial metabolic models for the DSM genome, then the models are gapfilled in three different growth conditions. Next, flux balance analysis (FBA) and flux variability analysis (FVA) techniques are applied to both study the growth of these models in minimal media and classify reactions within each model based on essentiality and functionality. The models are applied with the FBA method to predict essential genes, which are then compared to an updated list of essential genes obtained for B. subtilis 168, a very similar strain to the DSM isolate. The models are also applied to simulate Biolog growth conditions, and these results are compared with Biolog data collected for B. subtilis 168. Finally, the DSM metabolic models are applied to explore the pathways and genes responsible for producing isoprene in this strain. These studies demonstrate the accuracy and utility of models generated from the KBase pipelines, as well as exploring the tools available for analyzing these models.

Allen, Benjamin↗