Integrated 64-Channel Spatiotemporally Patterned Multipolar Neural Stimulator with 150nA–10mA Current Range at 8V–20V Voltage Compliance
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Biological and medical sciences↗
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Results for “spatiotemporal patterns”
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Regional biogeography versus intra-annual dynamics of the root and soil microbiome
Abstract Background Root and soil microbial communities constitute the below-ground plant microbiome, are drivers of nutrient cycling, and affect plant productivity. However, our understanding of their spatiotemporal patterns is confounded by exogenous factors that covary spatially, such as changes in host plant species, climate, and edaphic factors. These spatiotemporal patterns likely differ across microbiome domains (bacteria and fungi) and niches (root vs. soil). Results To capture spatial patterns at a regional scale, we sampled the below-ground microbiome of switchgrass monocultures of five sites spanning > 3 degrees of latitude within the Great Lakes region. To capture temporal patterns, we sampled the below-ground microbiome across the growing season within a single site. We compared the strength of spatiotemporal factors to nitrogen addition determining the major drivers in our perennial cropping system. All microbial communities were most strongly structured by sampling site, though collection date also had strong effects; in contrast, nitrogen addition had little to no effect on communities. Though all microbial communities were found to have significant spatiotemporal patterns, sampling site and collection date better explained bacterial than fungal community structure, which appeared more defined by stochastic processes. Root communities, especially bacterial, were more temporally structured than soil communities which were more spatially structured, both across and within sampling sites. Finally, we characterized a core set of taxa in the switchgrass microbiome that persists across space and time. These core taxa represented < 6% of total species richness but > 27% of relative abundance, with potential nitrogen fixing bacteria and fungal mutualists dominating the root community and saprotrophs dominating the soil community. Conclusions Our results highlight the dynamic variability of plant microbiome composition and assembly across space and time, even within a single variety of a plant species. Root and soil fungal community compositions appeared spatiotemporally paired, while root and soil bacterial communities showed a temporal lag in compositional similarity suggesting active recruitment of soil bacteria into the root niche throughout the growing season. A better understanding of the drivers of these differential responses to space and time may improve our ability to predict microbial community structure and function under novel conditions.
59 BASIC BIOLOGICAL SCIENCES↗
A double peak in the seasonality of California's photosynthesis as observed from space
Solar-induced chlorophyll fluorescence (SIF) has been shown to be a powerful proxy for photosynthesis and gross primary productivity (GPP). The recently launched TROPOspheric Monitoring Instrument (TROPOMI) features the required spectral resolution and signal-to-noise ratio to retrieve SIF from space. Here, we present a downscaling method to obtain 500 m spatial resolution SIF over California. We report daily values based on a 14 d window. TROPOMI SIF data show a strong correspondence with daily GPP estimates at AmeriFlux sites across multiple ecosystems in California. We find a linear relationship between SIF and GPP that is largely invariant across ecosystems with an intercept that is not significantly different from zero. Measurements of SIF from TROPOMI agree with MODerate Resolution Imaging Spectroradiometer (MODIS) vegetation indices – the normalized difference vegetation index (NDVI), enhanced vegetation index (EVI), and near-infrared reflectance of vegetation index (NIR$_v$) – at annual timescales but indicate different temporal dynamics at monthly and daily timescales. TROPOMI SIF data show a double peak in the seasonality of photosynthesis, a feature that is not present in the MODIS vegetation indices. The different seasonality in the vegetation indices may be due to a clear-sky bias in the vegetation indices, whereas previous work has shown SIF to have a low sensitivity to clouds and to detect the downregulation of photosynthesis even when plants appear green. We further decompose the spatiotemporal patterns in the SIF data based on land cover. The double peak in the seasonality of California's photosynthesis is due to two processes that are out of phase: grasses, chaparral, and oak savanna ecosystems show an April maximum, while evergreen forests peak in June. An empirical orthogonal function (EOF) analysis corroborates the phase offset and spatial patterns driving the double peak. The EOF analysis further indicates that two spatiotemporal patterns explain 84 % of the variability in the SIF data. Results shown here are promising for obtaining global GPP at sub-kilometer spatial scales and identifying the processes driving carbon uptake.
54 ENVIRONMENTAL SCIENCES↗
Climate lags and genetics determine phenology in quaking aspen ( Populus tremuloides )
Spatiotemporal patterns of phenology may be affected by mosaics of environmental and genetic variation. Environmental drivers may have temporally lagged impacts, but patterns and mechanisms remain poorly known. Here, we combine multiple genomic, remotely sensed, and physically modeled datasets to determine the spatiotemporal patterns and drivers of canopy phenology in quaking aspen, a widespread clonal dioecious tree species with diploid and triploid cytotypes. We show that over 391 km 2 of southwestern Colorado: greenup date, greendown date, and growing season length vary by weeks and differ across sexes, cytotypes, and genotypes; phenology has high phenotypic plasticity and heritabilities of 31–61% (interquartile range); and snowmelt date, soil moisture, and air temperature predict phenology, at temporal lags of up to 3 yr. Our study shows that lagged environmental effects are needed to explain phenological variation and that the effect of cytotype on phenology is obscured by its correlation with topography. Phenological patterns are consistent with responses to multiyear accumulation of carbon deficit or hydraulic damage.
carbon allocation↗
Shared micromobility as a first- and last-mile transit solution? Spatiotemporal insights from a novel dataset
The first- and last-mile (FM/LM) problem is a major deterrent to public transit use. With the rise of shared micromobility options such as shared e-scooters in recent years, there is a growing interest in understanding their potential to serve as a last-mile transit solution. However, empirical data regarding the integrated use of shared micromobility and public transit have been limited so far. As a result, much is unknown regarding the spatiotemporal patterns and characteristics of shared micromobility trips serving as an FM/LM connection to transit. Here, this paper addresses these knowledge gaps by leveraging a novel dataset (i.e., the Spin post-ride survey dataset) that records thousands of transit-connecting shared e-scooter trips in Washington DC. Specifically, we used the dataset to reveal the spatiotemporal patterns of transit-connecting shared e-scooter trips in Washington DC, resulting in some major policy insights regarding the integral use of shared e-scooters and public transit. We further leveraged the dataset to validate if and to what extent a commonly applied buffer-zone approach can infer FM/LM micromobility trips accurately. Statistical tests showed that the actual FM/LM Spin e-scooter trips differ from inferred FM/LM Spin e-scooter trips in both spatial and temporal dimensions. This indicates that the common practice of inferring FM/LM micromobility trips with a buffer-zone approach can lead to inaccurate estimates of transit-connecting micromobility trips.
29 ENERGY PLANNING, POLICY, AND ECONOMY↗
Sea Surface Temperature Imagery Elucidates Spatiotemporal Nutrient Patterns for Offshore Kelp Aquaculture Siting in the Southern California Bight
Not Available
54 ENVIRONMENTAL SCIENCES↗
Unveiling the drivers contributing to global wheat yield shocks through quantile regression
Sudden reductions in crop yield (i.e., yield shocks) severely disrupt the food supply, intensify food insecurity, depress farmers' welfare, and worsen a country's economic conditions. Here, we study the spatiotemporal patterns of wheat yield shocks, quantified by the lower quantiles of yield fluctuations, in 86 countries over 30 years. Furthermore, we assess the relationships between shocks and their key ecological and socioeconomic drivers using quantile regression based on statistical (linear quantile mixed model) and machine learning (quantile random forest) models. Using a panel dataset that captures spatiotemporal patterns of yield shocks and possible drivers in 86 countries, we find that the severity of yield shocks has been increasing globally since 1997. Moreover, our cross-validation exercise shows that quantile random forest outperforms the linear quantile regression model. Despite this performance difference, both models consistently reveal that the severity of shocks is associated with higher weather stress, nitrogen fertilizer application rate, and gross domestic product (GDP) per capita (a typical indicator for economic and technological advancement in a country). While the unexpected negative association between more severe wheat yield shocks and higher fertilizer application rate and GDP per capita does not imply a direct causal effect, they indicate that the advancement in wheat production has been primarily on achieving higher yields and less on lowering the possibility and magnitude of sharp yield reductions. Hence, in the context of growing extreme weather stress, there is a critical need to enhance the technology and management practices that mitigate yield shocks to improve the resilience of the world food systems.
60 APPLIED LIFE SCIENCES↗
Improving Geolocation Accuracy of the Advanced Meteorological Imager on the GEO-KOMPSAT-2A
GeoNEX is a collaborative project led by scientists from NASA and many other international institutes to generate Earth monitoring products using data streams from the latest geostationary (GEO) sensors. Its consistent processing and common gridding systems can produce research-quality data products from GEO sensors and leverage GEO-GEO or GEO-LEO (low earth orbit) synergistic uses. Currently, GeoNEX has produced and disseminated L1G (geometrically corrected Level 1 products) from GOES 16/17 ABIs and Himawari-8 AHI, but a new Korean geostationary sensor (Advanced Meteorological Imager, AMI) onboard Geo-KOMPSAT-2A covering a large proportion of Asia and all of Oceania is in development. Our recent efforts on assessing geolocation accuracy in ABI and AHI suggest a nontrivial residual exists in both level 1B data with varying spatiotemporal patterns. The findings urge us to prioritize identifying and correcting geolocation residuals of AMI to generate accurate and consistent GeoNEX top-of-atmosphere (TOA) reflectance products and following processing chains. Here we implement a phase correlation correction approach to a visible band (0.64 μm, 500 m) using landmarks prepared from finer scale digital terrain models. We characterize spatiotemporal patterns (e.g., diurnal & daily) of geolocation residuals of AMI before and after correction. We then assess stability of datasets and quantify impact of unexpected geolocation errors on terrestrial monitoring. The geolocation corrected AMI data are further compared with GeoNEX AHI L1G products which are able to create unique stereo-type observations with AMI through leveraging the similarities of spectral bands and the sun-target-sensor geometry. Further, we discuss challenges in utilizing the GEO-GEO (e.g., AMI & AHI) satellite data for potential applications.
Geostationary Satellites↗
Riverscape heterogeneity in estimated Chinook Salmon emergence phenology and implications for size and growth
Abstract Many salmonid‐bearing rivers exhibit thermal and hydrologic heterogeneity at multiple spatial and temporal scales, but how this translates into spatiotemporal patterns of fry emergence is poorly understood. Understanding this variability is important because emergence timing determines the biophysical conditions fish first experience (e.g., temperature, flow, and food supply), thereby influencing growth opportunities and survival during this critical life stage. We predicted spring Chinook Salmon ( Oncorhynchus tshawytscha ) emergence phenology across four northeastern Oregon subbasins over 5–9 years using empirical spawning and temperature data. We then related interannual emergence timing estimates to juvenile salmon size and growth rates at consistent sampling locations. There were clear longitudinal patterns of predicted emergence timing in each subbasin: The shape of these patterns was consistent among years, but not among subbasins. In two subbasins, emergence occurred progressively later with distance upstream, whereas in the other two subbasins emergence was earliest at upstream sites. Within each year, median emergence dates among sites within each subbasin ranged between 44 and 58 days. This spatial variation was comparable to interannual variation, with median emergence dates for a given location in each subbasin ranging between 47 and 74 days among years. Contrary to our expectations, juvenile salmon were not larger in years with earlier emergence, owing to slower estimated spring and summer growth rates compared to years with later emergence. Despite large interannual variation in estimated emergence dates, these results suggest that other factors (e.g., stream flow, temperature, and density‐dependence) were more important than growth duration in determining juvenile salmon growth rates and size among years. We demonstrated considerable spatial and interannual variation in emergence phenology within these subbasins. Understanding how this variation translates to spatiotemporal patterns of juvenile salmon habitat use, growth, and survival has important implications for guiding restoration efforts and understanding how climate change may impact these populations.
Kaylor, Matthew J.↗
Midwest Water Resources: Developing an Evapotranspiration Climatology to Analyze Spatiotemporal Water Budget Patterns for Agriculture and Natural Resources Managers in the Midwest
Evapotranspiration (ET) is a climatic variable critical to the hydrologic cycle and is used to evaluate spatiotemporal trends in drought conditions. Although in-situ observations provide accurate ET information, these records are spatially sparse. The United States Department of Agriculture (USDA) Midwest Climate Hub, National Integrated Drought Information System, Minnesota Department of Agriculture, Michigan State University, and the USDA Foreign Agricultural Service have partnered with DEVELOP to gain new insights on spatiotemporal patterns of ET with NASA satellite data. This project evaluates the feasibility of using remotely sensed ET data products to understand trends from 2001 through 2020. Actual ET (aET) data were sourced from NASA’s Terra Moderate Resolution Imaging Spectroradiometer (MODIS), and reference ET (refET) and precipitation data were sourced from the Gridded Surface Meteorological Dataset (gridMET). Spatial and temporal differences in the MODIS and gridMET data sets were resolved such that gridded data could be compared. These data sets were then used to produce monthly Normals maps of mm/8-day of precipitation, aET, and refET. Using precipitation and ET Normals maps, hydrologic state maps were produced by subtracting either refET or aET from precipitation. These hydrologic state maps provide a proxy water balance by summarizing the difference between water entering and leaving the ground surface. Additionally, the ET products were compared in timeseries plots. The ET products from this project provided partners with comparable datasets to assess potential drought and flooding conditions to support Midwest agricultural and natural resource managers in decision-making.
Emma Myrick↗
Light-activated microtubule-based two-dimensional active nematic
We assess the ability of two light responsive kinesin motor clusters to drive dynamics of microtubule-based active nematics: opto-K401, a processive motor, and opto-K365, a non-processive motor. Measurements reveal an order of magnitude improvement in the contrast of nematic flow speeds between maximally- and minimally-illuminated states for opto-K365 motors when compared to opto-K401 construct. For opto-K365 nematics, we characterize both the steady-state flow and defect density as a function of applied light. We also examine the transient behavior as the system switches between steady-states upon changes in light intensities. Although nematic flows reach a steady state within tens of seconds, the defect density exhibits transient behavior for up to 10 minutes, showing a separation between small-scale active flows and system-scale structural states. Furthermore, our work establishes an experimental platform that can exploit spatiotemporally-heterogeneous patterns of activity to generate targeted dynamical states.
42 ENGINEERING↗
Disentangling error structures of precipitation datasets using decision trees
Characterizing error structures in precipitation products not only facilitates their proper applications for scientific and practical purposes but also helps improve their retrieval algorithms and processing methods. Despite the fact that multiple precipitation products have been assessed in the literature, factors that affect their error structures remain inadequately addressed. By interpreting 60 binary decision trees, this study disentangles the error characteristics of precipitation products in terms of their spatiotemporal patterns and geographical factors. Three independent precipitation products - two satellite-based and one reanalysis datasets: the Integrated Multi-satellitE Retrievals for GPM (Global Precipitation Measurement) late run (IMERG-L), Soil Moisture to Rain-Advanced SCATterometer (SM2RAIN-ASCAT), and the Modern-Era Retrospective analysis for Research and Applications, Version 2 uncorrected precipitation output (MERRA2-UC), are evaluated across the contiguous United States from 2010 to 2019. Here, the ground-based Stage IV precipitation dataset is used as the ground truth. Results indicate that the MERRA2-UC outperforms the IMERG-L and SM2RAIN-ASCAT with higher accuracy and more stable interannual patterns for the analysis period. Decision trees cross-assess three spatiotemporal factors and find that the underestimation of MERRA2-UC occurs in the east of the Rocky Mountains, and SM2RAIN-ASCAT underestimates precipitation over high latitudes, especially in winter. Additionally, the decision tree method ascribes system errors to nine different geographical characteristics, of which the distance to the coast, soil type, and DEM are the three dominant features. On the other hand, the land cover type, topography position index, and aspect are three relatively weak factors.
54 ENVIRONMENTAL SCIENCES↗
Dissipating Step Bunches during Crystallization under Transport Control
In studies of crystal formation by the generation and spreading of layers, equidistant step trains are considered unstable---bunches and other spatiotemporal patterns of the growth steps are viewed as ubiquitous. We provide an example to the opposite. We monitor the spatiotemporal dynamics of steps and the resulting step patterns during crystallization of the proteins ferritin and apoferritin using the atomic force microscope. The variations in step velocity and density are not correlated, indicating the lack of a long-range attraction between the steps. We show that (i) because of its coupling to bulk transport, nucleation of new layers is chaotic and occurs at the facet edges, where the interfacial supersaturation is higher; (ii) step bunches self-organize via the competition for supply from the solution; and, (iii) bunches of weakly interacting steps decay as they move along the face. Tests by numerical modeling support the conclusions about the mechanisms underlying our observations. The results from these systems suggest that during crystallization controlled by transport, with weakly or noninteracting growth steps, the stable kinetic state of the surface is an equidistant step train, and step bunches only arise during nucleation of new layers. Since nucleation only occurs at a few sites on the surface, the surface morphology may be controllably patterned or smoothened by locally controlling nucleation.
Lin, Hong↗
Spatiotemporal Dynamics of the Relative Abundance of Soil Nutrient‐Degrading Enzyme‐Encoding Genes Across Continental US Ecoregions
Understanding the spatiotemporal patterns in the relative abundance of soil extracellular enzyme‐encoding genes is critical for predicting microbial responses to environmental change and their potential role in nutrient cycling. Yet, integrating novel metagenomic observations with spatiotemporal environmental gradients to infer regional patterns and future trajectories has remained unclear. To address this gap, we applied a machine learning (ML) approach, integrating soil metagenomic data with environmental variables—soil properties, topography, vegetation, and climate—to predict the relative abundance of enzyme‐encoding genes for soil carbon (C), nitrogen (N), and phosphorus (P) across surface soils of the continental United States. We assessed potential responses under future emission scenarios (SSP2‐4.5 and SSP5‐8.5) by comparing a baseline (1985–2014) to a future period (2071–2100). The ML model explained 57%–63% of baseline variation. Precipitation was identified as the most influential factor for the relative abundance of C‐ and N‐degrading enzyme‐encoding genes, while slope length, representing horizontal distance that water can travel downslope, was the primary driver for P‐degrading enzyme‐encoding genes abundance. Projections revealed spatially heterogeneous shifts across continental US ecoregions: the relative abundance of C‐ and N‐degrading enzyme‐encoding genes decreased in wetter ecoregions and increased in drier ecoregions under future climate, while P‐degrading enzyme‐encoding genes abundance decreased significantly in semiarid and Mediterranean ecoregions. This study demonstrates the utility of metagenomic data for mapping soil genetic potential and predicting its regional response to environmental change, to inform ecosystem management strategies.
extracellular enzyme-encoding genes↗
Explorative Visualization for Traffic Safety using Adaptive Study Areas
The pressing need to improve traffic safety has become a societal concern in many cities around the world. Many traffic accidents are not occurring as stand-alone events but as consequences of other road incidents and hazards. To capture the traffic safety indications from a holistic aspect, this paper presents a suite of visualization techniques to explore large traffic safety datasets collected from different sources using adaptive study areas which include the whole region (Hamilton County, Ohio, U.S.) as well as smaller sub-areas. In the present study, these data source include (1) Hamilton County’s 911 emergency response data, which includes traffic incidents as well as other types of incidents throughout the county, and (2) Tennessee crash data, which contains only vehicle crashes with more detail on the circumstances of each crash. We find that both abstract and spatial visualization techniques are used to derive a better understanding of traffic safety patterns for different traffic participants in various urban environments. In addition to the entire region of Hamilton County, safety is examined on the highways, in the downtown area, and in a shopping district east of the city center. It is possible to characterize incidents in the different areas, gain a better understanding of common incident patterns, and identify outliers in the data. Finally, a textured tile calendar is presented to compare spatiotemporal patterns.
99 GENERAL AND MISCELLANEOUS↗
Spatial Patterns and Trends of Summertime Low Cloudiness for the Pacific Northwest, 1996–2017
Summertime low clouds are common in the Pacific Northwest (PNW), but spatiotemporal patterns have not been characterized. We show the first maps of low cloudiness for the western PNW and North Pacific Ocean using a 22-year satellite-derived record of monthly mean low cloudiness frequency for May through September and supplemented by airport cloud base height observations. Domain-wide cloudiness peaks in midsummer and is strongest over the Pacific. Empirical orthogonal function (EOF) analysis identified four distinct PNW spatiotemporal modes: oceanic, terrestrial highlands, coastal, and northern coastal. There is a statistically significant trend over the 22-year record toward reduced low cloudiness in the terrestrial highlands mode, with strongest declines in May and June; however, this decline is not matched in the corresponding airport records. The coastal mode is partly constrained from moving inland by topographic relief and migrates southward in late summer, retaining higher late-season low cloud frequency than the other areas.
54 ENVIRONMENTAL SCIENCES↗
A Spatiotemporal Prediction Model for Regional Scheduling of Shared Bicycles Based on the INLA Method
Dock-less bicycle-sharing programs have been widely accepted as an efficient mode to benefit health and reduce congestions. And modeling and prediction has always been a core proposition in the field of transportation. Most of the existing demand prediction models for shared bikes take regions as research objects; therefore, a POI-based method can be a beneficial complement to existing research, including zone-level, OD-level, and station-level techniques. Point of interest (POI) is the location description of spatial entities, which can reflect the cycling route characteristics for both commuting and noncommuting trips to a certain extent, and is also the main generating point and attraction point of shared-bike travel flow. In this study, we make an effort to model a POI-level cycling demand with a Bayesian hierarchical method. The proposed model combines the integrated nested Laplace approximation (INLA) and random partial differential equation (SPDE) to cope with the huge computation in the modeling process. In particular, we have adopted the dock-less bicycle-sharing rental records of Mobike as a case study to validate our method; the study area was one of the fastest growing urban districts in Shanghai in August 2016. The operation results show that the method can help better understand, measure, and characterize spatiotemporal patterns of bike-share ridership at the POI level and quantify the impact of the spatiotemporal effect on bicycle-sharing use.
Yu, Zhuoran↗