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All sourcesNASA NTRSDOE OSTI
NASA NTRS2024

Land Cover Change Analysis and Spatial Variations in Southeast Asian Nations: Insights on Spatial Scale Dynamics

Land cover type is a fundamental aspect of studies using remote sensing for environmental analysis such as monitoring deforestation, quantifying wildland fire emissions, and more. There are many land cover products available for varying time periods and spatial resolutions, each with different land cover class definitions and number of land cover classes. These differences yield inherent variation in land cover estimates. In this study, we explore the spatial and areal variation between two major datasets for their commonly available time of 2018 to 2022 (MODIS 500m Land Cover and Esri Sentinel-2 10m land cover) in the continental Southeast Asia countries of Cambodia, Laos, Myanmar, Thailand, and Vietnam. To enable comparison, we resampled the datasets and reclassified the land cover classes to a common scheme. Major disagreement was detected between Esri and MODIS, especially for the wetlands/flooded vegetation class in which only 3.6% of pixels were in agreement. In addition to quantifying variation between the datasets, we quantify land cover change at the decadal scale of 2001, 2011, and 2021 for each country and identified province-level hotspots of land cover change. Cambodia experienced the highest rate of land cover change with 67.8% of total land area changed, followed by Vietnam (58.6%), Laos (50.2%), Myanmar (46.9%), and Thailand (46.3%). The highest rate of land cover change was detected in Odtar Mean Chey, Cambodia, which had large swaths of forest area cleared for agricultural production, river damming, and more. Ultimately, many areas in the region experienced forest clearing for crop production (i.e. rice) which appeared to be classified as wetland in the MODIS product, and crop in the Esri product. Myanmar was the only country which did not experience net decline in forest area over the 2001 to 2021 time period.

Land Cover Change↗
NASA NTRS1990

Cumulus cloud field morphology and spatial patterns derived from high spatial resolution Landsat imagery

Using high-spatial-resolution Landsat MSS imagery, the cumulus cloud morphology, cloud nearest-neighbor distributions, and cloud clumping scales were investigated. It is shown that the cloud-size distribution can be represented by a mixture of two power laws; clouds of diameters less than 1 km have power-law slope range of 1.4-2.3, while larger clouds have slopes from 2.1 to 4.75. The break in power-law slope occurs at the cloud size that makes the largest contribution to cloud cover. Results suggest that larger clouds grow at the expense of smaller clouds. It was also found that the cloud inhomogeneities have significant impact on radiative fluxes.

Sengupta, S. K.↗
DOE OSTI2026

Data for The Stem Cell-Type Transcriptome of Bioenergy Sorghum Reveals the Spatial Regulation of Secondary Cell Wall Networks

Bioenergy sorghum is a low-input, drought-resilient, deep-rooting annual crop that has high biomass yield potential enabling the sustainable production of biofuels, biopower, and bioproducts. Bioenergy sorghum’s 4-5 m stems account for ~80% of the harvested biomass. Stems accumulate high levels of sucrose that could be used to synthesize bioethanol and useful biopolymers if information about stem cell-type gene expression and regulation was available to enable engineering. To obtain this information, Laser Capture Microdissection (LCM) was used to isolate and collect transcriptome profiles from five major cell types that are present in stems of the sweet sorghum Wray. Transcriptome analysis identified genes with cell-type specific and cell-preferred expression patterns that reflect the distinct metabolic, transport, and regulatory functions of each cell type. Analysis of cell-type specific gene regulatory networks (GRNs) revealed that unique TF families contribute to distinct regulatory landscapes, where regulation is organized through various modes and identifiable network motifs. Cell-specific transcriptome data was combined with a stem developmental transcriptome dataset to identify the GRN that differentially activates the secondary cell wall (SCW) formation in stem xylem sclerenchyma and epidermal cells. The cell-type transcriptomic dataset provides a valuable source of information about the function of sorghum stem cell types and GRNs that will enable the engineering of bioenergy sorghum stems.

Software↗
DOE OSTI2024

Spatial Proteomics towards cellular Resolution

Introduction: Spatial biology is an emerging interdisciplinary field facilitating biological discoveries through the use of spatial omics technologies. Recent advancements in spatial transcriptomics, spatial genomics (e.g. genetic mutations and epigenetic marks), multiplexed immunofluorescence, and spatial metabolomics/lipidomics have enabled high-resolution spatial profiling of gene expression, genetic variation, protein expression, and metabolites/lipids profiles in tissue. These developments contribute to a deeper understanding of the spatial organization within tissue microenvironments at the molecular level. Areas covered: This report provides an overview of the untargeted, bottom-up mass spectrometry (MS)-based spatial proteomics workflow. It highlights recent progress in tissue dissection, sample processing, bioinformatics, and liquid chromatography (LC)-MS technologies that are advancing spatial proteomics toward cellular resolution. Expert opinion: The field of untargeted MS-based spatial proteomics is rapidly evolving and holds great promise. To fully realize the potential of spatial proteomics, it is critical to advance data analysis and develop automated and intelligent tissue dissection at the cellular or subcellular level, along with high-throughput LC-MS analyses of thousands of samples. In conclusion, achieving these goals will necessitate significant advancements in tissue dissection technologies, LC-MS instrumentation, and computational tools.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2003

Fractals and Spatial Methods for Mining Remote Sensing Imagery

The rapid increase in digital remote sensing and GIS data raises a critical problem -- how can such an enormous amount of data be handled and analyzed so that useful information can be derived quickly? Efficient handling and analysis of large spatial data sets is central to environmental research, particularly in global change studies that employ time series. Advances in large-scale environmental monitoring and modeling require not only high-quality data, but also reliable tools to analyze the various types of data. A major difficulty facing geographers and environmental scientists in environmental assessment and monitoring is that spatial analytical tools are not easily accessible. Although many spatial techniques have been described recently in the literature, they are typically presented in an analytical form and are difficult to transform to a numerical algorithm. Moreover, these spatial techniques are not necessarily designed for remote sensing and GIS applications, and research must be conducted to examine their applicability and effectiveness in different types of environmental applications. This poses a chicken-and-egg problem: on one hand we need more research to examine the usability of the newer techniques and tools, yet on the other hand, this type of research is difficult to conduct if the tools to be explored are not accessible. Another problem that is fundamental to environmental research are issues related to spatial scale. The scale issue is especially acute in the context of global change studies because of the need to integrate remote-sensing and other spatial data that are collected at different scales and resolutions. Extrapolation of results across broad spatial scales remains the most difficult problem in global environmental research. There is a need for basic characterization of the effects of scale on image data, and the techniques used to measure these effects must be developed and implemented to allow for a multiple scale assessment of the data before any useful process-oriented modeling involving scale-dependent data can be conducted. Through the support of research grants from NASA, we have developed a software module called ICAMS (Image Characterization And Modeling System) to address the need to develop innovative spatial techniques and make them available to the broader scientific communities. ICAMS provides new spatial techniques, such as fractal analysis, geostatistical functions, and multiscale analysis that are not easily available in commercial GIS/image processing software. By bundling newer spatial methods in a user-friendly software module, researchers can begin to test and experiment with the new spatial analysis methods and they can gauge scale effects using a variety of remote sensing imagery. In the following, we describe briefly the development of ICAMS and present application examples.

Lam, Nina↗
NASA NTRS2011

Automated Verification of Spatial Resolution in Remotely Sensed Imagery

Image spatial resolution characteristics can vary widely among sources. In the case of aerial-based imaging systems, the image spatial resolution characteristics can even vary between acquisitions. In these systems, aircraft altitude, speed, and sensor look angle all affect image spatial resolution. Image spatial resolution needs to be verified with estimators that include the ground sample distance (GSD), the modulation transfer function (MTF), and the relative edge response (RER), all of which are key components of image quality, along with signal-to-noise ratio (SNR) and dynamic range. Knowledge of spatial resolution parameters is important to determine if features of interest are distinguishable in imagery or associated products, and to develop image restoration algorithms. An automated Spatial Resolution Verification Tool (SRVT) was developed to rapidly determine the spatial resolution characteristics of remotely sensed aerial and satellite imagery. Most current methods for assessing spatial resolution characteristics of imagery rely on pre-deployed engineered targets and are performed only at selected times within preselected scenes. The SRVT addresses these insufficiencies by finding uniform, high-contrast edges from urban scenes and then using these edges to determine standard estimators of spatial resolution, such as the MTF and the RER. The SRVT was developed using the MATLAB programming language and environment. This automated software algorithm assesses every image in an acquired data set, using edges found within each image, and in many cases eliminating the need for dedicated edge targets. The SRVT automatically identifies high-contrast, uniform edges and calculates the MTF and RER of each image, and when possible, within sections of an image, so that the variation of spatial resolution characteristics across the image can be analyzed. The automated algorithm is capable of quickly verifying the spatial resolution quality of all images within a data set, enabling the appropriate use of those images in a number of applications.

Davis, Bruce↗
NASA NTRS2011

Graph Theory Roots of Spatial Operators for Kinematics and Dynamics

Spatial operators have been used to analyze the dynamics of robotic multibody systems and to develop novel computational dynamics algorithms. Mass matrix factorization, inversion, diagonalization, and linearization are among several new insights obtained using such operators. While initially developed for serial rigid body manipulators, the spatial operators and the related mathematical analysis have been shown to extend very broadly including to tree and closed topology systems, to systems with flexible joints, links, etc. This work uses concepts from graph theory to explore the mathematical foundations of spatial operators. The goal is to study and characterize the properties of the spatial operators at an abstract level so that they can be applied to a broader range of dynamics problems. The rich mathematical properties of the kinematics and dynamics of robotic multibody systems has been an area of strong research interest for several decades. These properties are important to understand the inherent physical behavior of systems, for stability and control analysis, for the development of computational algorithms, and for model development of faithful models. Recurring patterns in spatial operators leads one to ask the more abstract question about the properties and characteristics of spatial operators that make them so broadly applicable. The idea is to step back from the specific application systems, and understand more deeply the generic requirements and properties of spatial operators, so that the insights and techniques are readily available across different kinematics and dynamics problems. In this work, techniques from graph theory were used to explore the abstract basis for the spatial operators. The close relationship between the mathematical properties of adjacency matrices for graphs and those of spatial operators and their kernels were established. The connections hold across very basic requirements on the system topology, the nature of the component bodies, the indexing schemes, etc. The relationship of the underlying structure is intimately connected with efficient, recursive computational algorithms. The results provide the foundational groundwork for a much broader look at the key problems in kinematics and dynamics. The properties of general graphs and trees of nodes and edge were examined, as well as the properties of adjacency matrices that are used to describe graph connectivity. The nilpotency property of such matrices for directed trees was reviewed, and the adjacency matrices were generalized to the notion of block weighted adjacency matrices that support block matrix elements. This leads us to the development of the notion of Spatial Kernel Operator SKO kernels. These kernels provide the basis for the development of SKO resolvent operators.

Jain, Abhinandan↗
NASA NTRS2013

Spatial Statistical Data Fusion (SSDF)

As remote sensing for scientific purposes has transitioned from an experimental technology to an operational one, the selection of instruments has become more coordinated, so that the scientific community can exploit complementary measurements. However, tech nological and scientific heterogeneity across devices means that the statistical characteristics of the data they collect are different. The challenge addressed here is how to combine heterogeneous remote sensing data sets in a way that yields optimal statistical estimates of the underlying geophysical field, and provides rigorous uncertainty measures for those estimates. Different remote sensing data sets may have different spatial resolutions, different measurement error biases and variances, and other disparate characteristics. A state-of-the-art spatial statistical model was used to relate the true, but not directly observed, geophysical field to noisy, spatial aggregates observed by remote sensing instruments. The spatial covariances of the true field and the covariances of the true field with the observations were modeled. The observations are spatial averages of the true field values, over pixels, with different measurement noise superimposed. A kriging framework is used to infer optimal (minimum mean squared error and unbiased) estimates of the true field at point locations from pixel-level, noisy observations. A key feature of the spatial statistical model is the spatial mixed effects model that underlies it. The approach models the spatial covariance function of the underlying field using linear combinations of basis functions of fixed size. Approaches based on kriging require the inversion of very large spatial covariance matrices, and this is usually done by making simplifying assumptions about spatial covariance structure that simply do not hold for geophysical variables. In contrast, this method does not require these assumptions, and is also computationally much faster. This method is fundamentally different than other approaches to data fusion for remote sensing data because it is inferential rather than merely descriptive. All approaches combine data in a way that minimizes some specified loss function. Most of these are more or less ad hoc criteria based on what looks good to the eye, or some criteria that relate only to the data at hand.

Braverman, Amy J.↗
NASA NTRS2012

Advances in Spectral-Spatial Classification of Hyperspectral Images

Recent advances in spectral-spatial classification of hyperspectral images are presented in this paper. Several techniques are investigated for combining both spatial and spectral information. Spatial information is extracted at the object (set of pixels) level rather than at the conventional pixel level. Mathematical morphology is first used to derive the morphological profile of the image, which includes characteristics about the size, orientation, and contrast of the spatial structures present in the image. Then, the morphological neighborhood is defined and used to derive additional features for classification. Classification is performed with support vector machines (SVMs) using the available spectral information and the extracted spatial information. Spatial postprocessing is next investigated to build more homogeneous and spatially consistent thematic maps. To that end, three presegmentation techniques are applied to define regions that are used to regularize the preliminary pixel-wise thematic map. Finally, a multiple-classifier (MC) system is defined to produce relevant markers that are exploited to segment the hyperspectral image with the minimum spanning forest algorithm. Experimental results conducted on three real hyperspectral images with different spatial and spectral resolutions and corresponding to various contexts are presented. They highlight the importance of spectral–spatial strategies for the accurate classification of hyperspectral images and validate the proposed methods.

hyperspectral image↗
NASA NTRS2022

Satellites quantify the spatial extent of cyanobacterial blooms across the United States at multiple scales

Previous studies indicate that cyanobacterial harmful algal bloom (cyanoHAB) frequency, extent, and magnitude have increased globally over the past few decades. However, little quantitative capability is available to assess these metrics of cyanoHABs across broad geographic scales and at regular intervals. Here, the spatial extent was quantified from a cyanobacteria algorithm applied to two European Space Agency satellite platforms—the MEdium Resolution Imaging Spectrometer (MERIS) onboard Envisat and the Ocean and Land Colour Instrument (OLCI) onboard Sentinel-3. CyanoHAB spatial extent was defined for each geographic area as the percentage of valid satellite pixels that exhibited cyanobacteria above the detection limit of the satellite sensor. This study quantified cyanoHAB spatial extent for over 2,000 large lakes and reservoirs across the contiguous United States (CONUS) during two time periods: 2008–2011 via MERIS and 2017–2020 via OLCI when cloud-, ice-, and snowfree imagery was available. Approximately 56% of resolvable lakes were glaciated, 13% were headwater, isolated, or terminal lakes, and the rest were primarily drainage lakes. Results were summarized at national-, regional-, state-, and lake-scales, where regions were defined as nine climate regions which represent climatically consistent states. As measured by satellite, changes in national cyanoHAB extent did have a strong increase of 6.9% from 2017 to 2020 (|Kendall’s tau (τ)| = 0.56; gamma (γ) = 2.87 years), but had negligible change (|τ| = 0.03) from 2008 to 2011. Two of the nine regions had moderate (0.3 ≤ |τ| < 0.5) increases in spatial extent from 2017 to 2020, and eight of nine regions had negligible (|τ| < 0.2) change from 2008 to 2011. Twelve states had a strong or moderate increase from 2017 to 2020 (|τ| ≥ 0.3), while only one state had a moderate increase and two states had a moderate decrease from 2008 to 2011. A decrease, or no change, in cyanoHAB spatial extent did not indicate a lack of issues related to cyanoHABs. Sensitivity results of randomly omitted daily CONUS scenes confirm that even with reduced data availability during a short four-year temporal assessment, the direction and strength of the changes in spatial extent remained consistent. We present the first set of national maps of lake cyanoHAB spatial extent across CONUS and demonstrate an approach for quantifying past and future changes at multiple spatial scales. Results presented here provide water quality managers information regarding current cyanoHAB spatial extent and quantify rates of change.

Harmful algal blooms↗
NASA NTRS2022

Satellites Quantify the Spatial Extent of Cyanobacterial Blooms Across the United States at Multiple Scales

Previous studies indicate that cyanobacterial harmful algal bloom (cyanoHAB) frequency, extent, and magnitude have increased globally over the past few decades. However, little quantitative capability is available to assess these metrics of cyanoHABs across broad geographic scales and at regular intervals. Here, the spatial extent was quantified from a cyanobacteria algorithm applied to two European Space Agency satellite platforms—the MEdium Resolution Imaging Spectrometer (MERIS) onboard Envisat and the Ocean and Land Colour Instrument (OLCI) onboard Sentinel-3. CyanoHAB spatial extent was defined for each geographic area as the percentage of valid satellite pixels that exhibited cyanobacteria above the detection limit of the satellite sensor. This study quantified cyanoHAB spatial extent for over 2,000 large lakes and reservoirs across the contiguous United States (CONUS) during two time periods: 2008–2011 via MERIS and 2017–2020 via OLCI when cloud-, ice-, and snow-free imagery was available. Approximately 56% of resolvable lakes were glaciated, 13% were headwater, isolated, or terminal lakes, and the rest were primarily drainage lakes. Results were summarized at national-, regional-, state-, and lake-scales, where regions were defined as nine climate regions which represent climatically consistent states. As measured by satellite, changes in national cyanoHAB extent did have a strong increase of 6.9% from 2017 to 2020 (|Kendall’s tau (τ)| = 0.56; gamma (γ) = 2.87 years), but had negligible change (|τ| = 0.03) from 2008 to 2011. Two of the nine regions had moderate (0.3 ≤ |τ| < 0.5) increases in spatial extent from 2017 to 2020, and eight of nine regions had negligible (|τ| < 0.2) change from 2008 to 2011. Twelve states had a strong or moderate increase from 2017 to 2020 (|τ| ≥ 0.3), while only one state had a moderate increase and two states had a moderate decrease from 2008 to 2011. A decrease, or no change, in cyanoHAB spatial extent did not indicate a lack of issues related to cyanoHABs. Sensitivity results of randomly omitted daily CONUS scenes confirm that even with reduced data availability during a short four-year temporal assessment, the direction and strength of the changes in spatial extent remained consistent. We present the first set of national maps of lake cyanoHAB spatial extent across CONUS and demonstrate an approach for quantifying past and future changes at multiple spatial scales. Results presented here provide water quality managers information regarding current cyanoHAB spatial extent and quantify rates of change.

Harmful Algal Blooms↗
DOE OSTI2025

Angular-spatial hp -adaptivity for radiative transfer with discontinuous Galerkin spectral element methods

Radiative transfer is important for many science and engineering applications, and numerical simulations of radiative transfer can be challenging. For instance, the radiation field is seven-dimensional – three spatial, two angular, one wavelength, and one temporal – and often features steep gradients. Therefore, memory usage is a key issue. To reduce memory, some past work has investigated the use of adaptive mesh refinement (AMR), typically for either the spatial or angular coordinate, and typically for only h -adaptivity. Here, we propose the use of AMR for the spatial and angular coordinates together, and the use of h - and p -adaptivity together as hp -AMR for the potential for further memory savings. We implemented the proposed method for several test cases in two spatial and one angular dimension, with the discontinuous Galerkin spectral element method. These test cases featured highly anisotropic angular radiation, with or without steep spatial gradients. Our primary findings from these test cases were: (1) Angular hp -adaptivity can deliver the radiation solution with the same accuracy as, and with much less computational memory than, uniform angular h - or p -refinements, or angular h -adaptivity alone. This is most obvious when the incoming radiation is highly anisotropic, in which case the savings can be orders of magnitude. (2) Full spatial-angular hp -adaptivity is more efficient in solution representation, compared to solely spatial or solely angular -adaptivity. This is most evident when steep gradients are present in both the spatial and angular distribution. These results suggest that adaptive spatial- hp angular-refinement may perform well in large-scale seven-dimensional applications.

Adaptive refinement↗
DOE OSTI2026

Knowledge-guided graph machine learning for spatially distributed prediction of daily discharge and nitrogen export dynamics

Spatially distributed prediction of streamflow and nitrogen export dynamics is essential for precision management of agricultural watersheds. While temporal deep learning models such as Long Short-Term Memory (LSTM) have shown strong performance at basin scales, their ability to generalize spatially is limited by insufficient representation of spatial dependencies and flow paths, particularly under data-scarce conditions. To address this gap, we propose HydroGraphNet, a knowledge-guided graph machine learning framework that integrates process-based knowledge and explicit spatial learning into temporal modeling. This framework incorporates directed graph topology to encode watershed connectivity and upstream inflows, with mass balance constraints to improve physical consistency. To enhance generalization in sparsely monitored regions, HydroGraphNet is pretrained on synthetic data generated by the SWAT+ (Soil and Water Assessment Tool Plus) model. We evaluated HydroGraphNet in the Upper Sangamon River Basin (44 HUC-12 subwatersheds, 2001–2020) against two LSTM baselines: a lumped basin-level model and a distributed variant. When benchmarked on SWAT+ simulations in pretraining, HydroGraphNet improved test NSEs by 8.9% (discharge) and 13.7% (NO₃–N load) in temporal extrapolation, and by 27.1% and 34.7% in spatial extrapolation, relative to the Lumped LSTM baseline. After fine-tuning with USGS monitoring data, the model achieved mean test NSE (KGE) scores of 0.768 (0.861) for discharge and 0.626 (0.664) for NO₃–N load, substantially outperforming baselines. Attribution analysis further highlighted the importance of upstream inflow representation and graph-based spatial learning in capturing cross-subwatershed dependencies. The model also reproduced seasonal hydrological and biogeochemical patterns consistent with known processes, demonstrating its robustness and process fidelity for spatially distributed prediction. Altogether, HydroGraphNet advances the integration of physical knowledge and spatially explicit learning in hydrological modeling, offering a generalizable framework for distributed modeling to support spatially targeted water quality management in data-scarce watersheds.

54 ENVIRONMENTAL SCIENCES↗