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At least 37 records · Page 2

Winter soil freeze-thaw cycles lead to reductions in soil microbial biomass and activity not compensated for by soil warming

Air temperatures are rising and the winter snowpack is getting thinner in many high-latitude and high-elevation ecosystems around the globe. Past studies show that soil warming accelerates microbial metabolism and stimulates soil carbon (C) and nitrogen (N) cycling. Conversely, winter snow removal to simulate loss of snow cover leads to increased soil freezing and reductions in soil microbial biomass, exoenzyme activity, and N cycling. The Climate Change Across Seasons Experiment (CCASE), located at Hubbard Brook Experimental Forest, NH (USA) is designed to evaluate the combined effects of growing season soil warming and an increased frequency of winter soil freeze-thaw cycles on a northern forest ecosystem. Soils were collected from CCASE over two years (2014 and 2015) and extractable C and N pool sizes, as well as microbial biomass, exoenzymes, and potential net N mineralization and microbial respiration were measured. Soil warming alone did not stimulate microbial activity at any sampling time. Extractable amino acid N and organic C, proteolytic and acid phosphatase activity, and microbial respiration were reduced by the combination of warming in the growing season and winter soil freeze-thaw cycles during the period following snowmelt through tree leaf out in spring. The declines in microbial activity also coincided with an 85% decline in microbial biomass N at that time. Growing season warming and winter soil freeze-thaw cycles also resulted in a two-fold reduction in phenol oxidase activity and a 20% reduction in peroxidase activity and these declines persisted throughout the snow-free time of the year. Finally, the results from this study suggest that positive feedbacks between warming and rates of soil C and N cycling over the next 100 years will be partially mitigated by an increased frequency of winter soil freeze-thaw cycles, which decrease microbial biomass and rates of soil microbial activity.

54 ENVIRONMENTAL SCIENCES↗

In situ monitoring of H and O stable isotopes in soil water reveals ecohydrologic dynamics in managed soil systems [Urban ecohydrologic dynamics revealed by in situ monitoring of H and O stable isotopes in soil water]

The water cycle in urban and hydrologically managed settings is subject to perturbations that are dynamic on small spatial and temporal scales; the effects of which may be especially profound in soils. We deploy a membrane inlet-based laser spectroscopy system in conjunction with soil moisture and temperature sensors to monitor soil water dynamics and H and O stable isotope ratios (δ 2 H and δ 18 O values) in a seasonally irrigated urban-landscaped garden soil over the course of 9 months between the cessation of irrigation in the autumn and the onset of irrigation through the summer. Here, we find that soil water δ 2 H and δ 18 O values predominately reflect seasonal precipitation and irrigation inputs. A comparison of total soil water by cryogenic extraction and mobile soil water measured by in situ water vapor probes reveals that initial infiltration events after long periods of soil drying (the autumn season in this case) emplace water into the soil matrix that is not easily replaced by, or mixed with, successive pulses of infiltrating soil water. Tree stem xylem water H and O stable isotope composition did not match that of available water sources. Our findings suggest that partitioning of soil water into mobile and immobile “pools” and resulting ecohydrologic separation may occur in engineered and hydrologically managed soils and not be limited to natural settings. Furthermore, the laser spectroscopy method detailed here has potential to yield insights in a variety of critical zone and vadose zone studies, potential that is heightened by the simplicity and portability of the system.

07 ISOTOPE AND RADIATION SOURCES↗

Using soil library hyperspectral reflectance and machine learning to predict soil organic carbon: Assessing potential of airborne and spaceborne optical soil sensing

Soil organic carbon (SOC) is a key variable to determine soil functioning, ecosystem services, and global carbon cycles. Spectroscopy, particularly optical hyperspectral reflectance coupled with machine learning, can provide rapid, efficient, and cost-effective quantification of SOC. However, how to exploit soil hyperspectral reflectance to predict SOC concentration, and the potential performance of airborne and satellite data for predicting surface SOC at large scales remain relatively underknown. Here, this study utilized a continental-scale soil laboratory spectral library (37,540 full-pedon 350–2500 nm reflectance spectra with SOC concentration of 0–780 g·kg –1 across the US) to thoroughly evaluate seven machine learning algorithms including Partial-Least Squares Regression (PLSR), Random Forest (RF), K-Nearest Neighbors (KNN), Ridge, Artificial Neural Networks (ANN), Convolutional Neural Networks (CNN), and Long Short-Term Memory (LSTM) along with four preprocessed spectra, i.e. original, vector normalization, continuum removal, and first-order derivative, to quantify SOC concentration. Furthermore, by using the coupled soil-vegetation-atmosphere radiative transfer model, we simulated twelve airborne and spaceborne hyper/multi-spectral remote sensing data from surface bare soil laboratory spectra to evaluate their potential for estimating SOC concentration of surface bare soils. Results show that LSTM achieved best predictive performance of quantifying SOC concentration for the whole data sets (R 2 = 0.96, RMSE = 30.81 g·kg –1 ), mineral soils (SOC ≤ 120 g·kg –1 , R 2 = 0.71, RMSE = 10.60 g·kg –1 ), and organic soils (SOC > 120 g·kg –1 , R 2 = 0.78, RMSE = 62.31 g·kg –1 ). Spectral data preprocessing, particularly the first-order derivative, improved the performance of PLSR, RF, Ridge, KNN, and ANN, but not LSTM or CNN. We found that the SOC models of mineral and organic soils should be distinguished given their distinct spectral signatures. Finally, we identified that the shortwave infrared is vital for airborne and spaceborne hyperspectral sensors to monitor surface SOC. This study highlights the high accuracy of LSTM with hyperspectral/multispectral data to mitigate a certain level of noise (soil moisture <0.4 m 3 ·m –3 , green leaf area < 0.3 m 2 ·m –2 , plant residue <0.4 m 2 ·m –2 ) for quantifying surface SOC concentration. Forthcoming satellite hyperspectral missions like Surface Biology and Geology (SBG) have a high potential for future global soil carbon monitoring, while high-resolution satellite multispectral fusion data can be an alternative.

54 ENVIRONMENTAL SCIENCES↗

Radiocarbon of soil CO2 efflux and soils with experimental soil warming and drying in lowland tropical forests in Panama

In 2019, we measured the Δ14C and δ13C of soil respired carbon dioxide (CO2) in Panamanian forests that are subject to either in situ experimental soil warming (4C above ambient temperature to 1.2 m depth) or in situ experimental drying (50% throughfall exclusion). The warming site and one drying site are both within the Barro Colorado Nature Monument in nearby and similar forests on similar soils, enabling direct comparison of warming and drying effects on soil CO2 efflux. A second drying experiment is on the northern side of the Panama Isthmus on infertile soils where mean annual precipitation is greater, representative of a broad geographic area of the tropics. Given the seasonality of these forests, we performed measurements at stages of the seasonal cycle for which we expected the largest variation in CO2 efflux between control and experimental plots based on previous studies – the wet season (October-December) and dry season (March/April) or dry-to-wet season transition (May). This dataset includes Δ14C and δ13C of in situ soil surface CO2 flux as well as CO2 flux rates, volumetric soil moisture, soil temperature, and calculated partitioning of the fraction of total soil respiration from heterotrophs vs roots at the time of isotope sampling in AllSites_SoilResp_14C_data.xlsx. This dataset also includes Δ14C and δ13C of bulk soil, density fractions, and CO2 respired during laboratory incubations in AllSites_bulk_soil14C.xlsx. Datafiles are also available in csv format.

54 ENVIRONMENTAL SCIENCES↗

Hotspots of soil N 2 O emission enhanced through water absorption by plant residue

N 2 O is a highly potent greenhouse gas and arable soils represent its major anthropogenic source. Field-scale assessments and predictions of soil N 2 O emission remain uncertain and imprecise due to the episodic and microscale nature of microbial N 2 O production, most of which occurs within very small discrete soil volumes. Such hotspots of N 2 O production are often associated with decomposing plant residue. Here we quantify physical and hydrological soil characteristics that lead to strikingly accelerated N 2 O emissions in plant residue-induced hotspots. Results reveal a mechanism for microscale N 2 O emissions: water absorption by plant residue that creates unique micro-environmental conditions, markedly different from those of the bulk soil. Moisture levels within plant residue exceeded those of bulk soil by 4–10-fold and led to accelerated N 2 O production via microbial denitrification. The presence of large (Ø >35 μm) pores was a prerequisite for maximized hotspot N 2 O production and for subsequent diffusion to the atmosphere. Understanding and modelling hotspot microscale physical and hydrologic characteristics is a promising route to predict N 2 O emissions and thus to develop effective mitigation strategies and estimate global fluxes in a changing environment.

59 BASIC BIOLOGICAL SCIENCES↗

Soil porous microstructure control over soil organic matter mobility: A multimethod workflow for understanding chemistry-dependent organic matter binding in soil

Soil organic matter (SOM) has attracted a great deal of interest; particularly for its potential to mitigate human derived CO 2 emissions. Studies have demonstrated that SOM plays a critical role in carbon storage and CO 2 sequestration. However, the sorption properties of SOM, which influence its transport in pore water and stabilization within the soil, remain poorly understood. This study develops a workflow to: (1) examine compound-specific advective and diffusive transport and desorption behaviors, (2) quantify desorption rates through stop-flow and continuous-flow column experiments, and (3) evaluate the impact of soil microporosity on SOM mobility using high-resolution imaging and extractions. Intact core column experiments were conducted on Uncultivated (Natural) and Cultivated soil samples, both were arid soils, collected in Washington State. X-ray computed tomography was employed to measure porosity and pore connectivity, while Fourier-transform ion cyclotron resonance mass spectrometry was used to analyze SOM composition. The findings revealed that cultivation increased total carbon and nitrogen levels due to irrigation and fertilization, enhancing carbon capture potential in arid soils. In contrast, the Natural soil, characterized by higher porosity and connectivity, contained more oxidized carbon. Pore network analysis indicated that soil compaction in the Cultivated soil may lead to longer diffusion pathways, significantly influencing SOM transport and stability.

Hydraulic Properties↗

Soil pH Buffering Capacity, Geochemical Characterization, and Soil Water Retention for Arctic Soils of Seward Peninsula and Utqiagvik, Alaska, 2013-2019

This dataset provides pH titration data and soil pH buffering capacities of 21 Arctic soils that were collected between 2013-2019. Geochemical data including soil organic carbon, carbon:nitrogen ratio, initial pH, and gravimetric water content are also reported. Additional measurements of cation exchange capacity and soil water retention (dry range) are presented for selected soils. A script, developed in R, is also included for a simple biogeochemical simulation that incorporates soil pH buffering capacity. This dataset contains 7 csv files and one R script.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition

Protists, in particular bacterivores, are essential players in the rhizosphere; thus, how their interactions with bacteria and fungi affect plant productivity and soil nutrient cycles warrants more attention. Using next-generation sequencing of the 18 S rRNA gene, we investigated the distribution of two major protistan phyla, Cercozoa and Endomyxa, across four seasons, and four soil compartments - rhizosphere, root, soil and litter. The sampling was replicated in two forests in Norway and the Czech Republic, in order to test our results across biogeographic scales. Compartment had a major influence in shaping protistan communities, over and above spatial distance and seasonal variation. Protistan diversity was highest in the bulk soil while lowest in the roots, suggesting that the plants select for restricted assemblages of protists. Accordingly, only the root compartment harboured a subset of the bulk soil protistan diversity. In addition, protistan communities showed markedly different distributions according to their feeding modes, with opposite patterns for bacterivores versus omnivores and eukaryvores. The small bacterivorous flagellates (mostly Glissomonadida) were more abundant in roots, while the larger amoeboid eukaryvores (e.g. some of the Cryomonadida and vampyrellids) dominated in soil and in the rhizosphere, and the omnivores (e.g. Euglyphida and part of the Cercomonadida), also large and mostly amoeboid, were more abundant in litter. The current view of the soil microbiome is mostly focused on bacteria and fungi: this detailed study on the community distribution of protists according to their feeding modes reveals the essential role they play in each of the soil compartments, an essential precondition for a detailed understanding of the soil food web and nutrient cycling in forest.

59 BASIC BIOLOGICAL SCIENCES↗

The microbiome structure of decomposing plant leaves in soil depends on plant species, soil pore sizes, and soil moisture content

Microbial communities are known as the primary decomposers of all the carbon accumulated in the soil. However, how important soil structure and its conventional or organic management, moisture content, and how different plant species impact this process are less understood. To answer these questions, we generated a soil microcosm with decomposing corn and soy leaves, as well as soil adjacent to the leaves, and compared it to control samples. We then used high-throughput amplicon sequencing of the ITS and 16S rDNA regions to characterize these microbiomes. Leaf microbiomes were the least diverse and the most even in terms of OTU richness and abundance compared to near soil and far soil, especially in their bacterial component. Microbial composition was significantly and primarily affected by niche (leaves vs. soil) but also by soil management type and plant species in the fungal microbiome, while moisture content and pore sizes were more important drivers for the bacterial communities. The pore size effect was significantly dependent on moisture content, but only in the organic management type. Overall, our results refine our understanding of the decomposition of carbon residues in the soil and the factors that influence it, which are key for environmental sustainability and for evaluating changes in ecosystem functions.

16S rDNA↗

Microwave backscatter dependence on surface roughness, soil moisture, and soil texture. II - Vegetation-covered soil

Results are presented for an experimental investigation to determine the relationship between radar backscatter coefficient (sigma) and soil moisture for vegetation-covered soil. These results extend a previous report which showed the experimental relationship between sigma and soil moisture for bare soil. It is shown that the highest correlation between sigma and soil moisture is 0.92 for the combined response of four crop types measured at 4.25 GHz, 10 deg incidence angle, and HH polarization. Radar look direction, relative to the crop row direction, is shown to have an insignificant effect on soil-moisture estimation if the radar frequency is higher than 4 GHz. The dependence on soil type can be minimized by expressing soil moisture in units of percent of field capacity. The possibility of using a single radar for measuring soil moisture for both bare and vegetated fields is demonstrated with a linear estimation algorithm having an experimental correlation coefficinet of 0.8.

Ulaby, F. T.↗

The hysteresis response of soil CO 2 concentration and soil respiration to soil temperature

Diurnal hysteresis between soil temperature (T s ) and both CO 2 concentration ([CO 2 ]) and soil respiration rate (R s ) were reported across different field experiments. However, the causes of these hysteresis patterns remain a subject of debate, with biotic and abiotic factors both invoked as explanations. Here, to address these issues, a CO 2 gas transport model is developed by combining a layer-wise mass conservation equation for subsurface gas phase CO 2 , Fickian diffusion for gas transfer, and a CO 2 source term that depends on soil temperature, moisture, and photosynthetic rate. Using this model, a hierarchy of numerical experiments were employed to disentangle the causes of the hysteretic [CO 2 ]-T s and CO 2 flux T s (i.e., F-T s ) relations. Model results show that gas transport alone can introduce both [CO 2 ]-T s and F-T s hystereses and also confirm prior findings that heat flow in soils lead to [CO 2 ] and F being out of phase with T s , thereby providing another reason for the occurrence of both hystereses. The area (A hys ) of the [CO 2 ]-T s hysteresis near the surface increases, while the A hys of the Rs-Ts hysteresis decreases as soils become wetter. Moreover, a time-lagged carbon input from photosynthesis deformed the [CO 2 ]-T s and R s -T s patterns, causing a change in the loop direction from counterclockwise to clockwise with decreasing time lag. An asymmetric 8-shaped pattern emerged as the transition state between the two loop directions. Lastly, tracing the pattern and direction of the hysteretic [CO 2 ]-T s and R s -T s relations can provide new ways to fingerprint the effects of photosynthesis stimulation on soil microbial activity and detect time lags between rhizospheric respiration and photosynthesis.

58 GEOSCIENCES↗

A novel approach to evaluate soil heat flux calculation: An analytical review of nine methods

Abstract There are no direct methods to evaluate calculated soil heat flux (SHF) at the surface ( G 0 ). Instead, validation and cross evaluation of methods for calculating G 0 usually rely on the conventional calorimetric method or the degree of the surface energy balance closure. However, there is uncertainty in the calorimetric method itself, and factors apart from G 0 also contribute to nonclosure of the surface energy balance. Here we used a novel approach to evaluate nine different methods for calculating SHF, including the calorimetric method and methods based on analytical solutions of the heat diffusion equation. The SHF ( G z ) measured by a self‐calibrating SHF plate at a depth of z = 5 cm below the surface (hereafter G m _5 cm ) was deployed as a reference. Each SHF calculation method was assessed by comparing the calculated G z at the same depth (hereafter G c _5 cm ) with G m _5 cm . The calorimetric method and simple measurement method performed best in determining G c _5 cm but still underestimated G m _5 cm by 19% during the daytime. Possible causes for this underestimation include errors and uncertainties in SHF measurements and soil thermal properties, as well as the phase lag between G c _5 cm and G m _5 cm . Our results indicate that the calorimetric method achieves the most accurate SHF estimates if self‐calibrating SHF plates are deployed at two depths (e.g., 5 cm and 10 cm), soil temperature and water content measurements are made in a few depths between the two plates, and soil thermal properties are accurately quantified.

Gao, Zhongming↗

Phenazine‐1‐carboxylic acid and soil moisture influence biofilm development and turnover of rhizobacterial biomass on wheat root surfaces

Summary Phenazine‐1‐carboxylic acid (PCA) is produced by rhizobacteria in dryland but not in irrigated wheat fields of the Pacific Northwest, USA. PCA promotes biofilm development in bacterial cultures and bacterial colonization of wheat rhizospheres. However, its impact upon biofilm development has not been demonstrated in the rhizosphere, where biofilms influence terrestrial carbon and nitrogen cycles with ramifications for crop and soil health. Furthermore, the relationships between soil moisture and the rates of PCA biosynthesis and degradation have not been established. In this study, expression of PCA biosynthesis genes was upregulated relative to background transcription, and persistence of PCA was slightly decreased in dryland relative to irrigated wheat rhizospheres. Biofilms in dryland rhizospheres inoculated with the PCA‐producing (PCA + ) strain Pseudomonas synxantha 2‐79RN 10 were more robust than those in rhizospheres inoculated with an isogenic PCA‐deficient (PCA ‐ ) mutant strain. This trend was reversed in irrigated rhizospheres. In dryland PCA + rhizospheres, the turnover of 15 N‐labelled rhizobacterial biomass was slower than in the PCA ‐ and irrigated PCA + treatments, and incorporation of bacterial 15 N into root cell walls was observed in multiple treatments. These results indicate that PCA promotes biofilm development in dryland rhizospheres, and likely influences crop nutrition and soil health in dryland wheat fields.

LeTourneau, Melissa K.↗

L-Band Microwave Satellite Data and Model Simulations Over the Dry Chaco to Estimate Soil Moisture, Soil Temperature, Vegetation and Soil Salinity

The Dry Chaco in South America is a semi-arid ecoregion prone to dryland salinization. In this region, we investigated coarse-scale surface soil moisture (SM), soil temperature, soil salinity and vegetation, using L-band microwave brightness temperature (TB) observations and retrievals from the Soil Moisture Ocean Salinity (SMOS) and Soil Moisture Active Passive (SMAP) satellite missions, Catchment Land Surface Model (CLSM) simulations, and in situ measurements within 26 sampled satellite pixels. Across these 26 sampled pixels, the satellite-based SM outperformed CLSM SM compared to field data, and forward L-band TB simulations derived from in situ SM and temperature performed better than those derived from CLSM estimates relative to SMOS TB observations. The surface salinity for the sampled pixels was on average only 4 mg/g and only locally influenced the TB simulations, when including salinity in the dielectric mixing model of the forward radiative transfer model (RTM) simulations. To explore the potential of retrieving salinity together with other RTM parameters to optimize TB simulations over the entire Dry Chaco, the RTM was inverted using 10 years of multi-angular SMOS TB data and constraints of CLSM SM and temperature. However, the latter modeled SM was not sufficiently accurate and factors such as open surface water were missing in the background constraints, so that the salinity retrievals effectively represented a bulk correction of the dielectric constant, rather than salinity per se. However, the retrieval of vegetation, scattering albedo and surface roughness resulted in realistic values.

L-Band↗

Interactive Soil Dust Aerosol Model in the GISS GCM: Sensitivity of the Soil Dust Cycle to Radiative Properties of Soil Dust Aerosols - Part 1

The sensitivity of the soil dust aerosol cycle to the radiative forcing by soil dust aerosols is studied. Four experiments with the NASA/GISS atmospheric general circulation model, which includes a soil dust aerosol model, are compared, all using a prescribed climatological sea surface temperature as lower boundary condition. In one experiment, dust is included as dynamic tracer only (without interacting with radiation), whereas dust interacts with radiation in the other simulations. Although the single scattering albedo of dust particles is prescribed to be globally uniform in the experiments with radiatively active dust, a different single scattering albedo is used in those experiments to estimate whether regional variations in dust optical properties, corresponding to variations in mineralogical composition among different source regions, are important for the soil dust cycle and the climate state. On a global scale, the radiative forcing by dust generally causes a reduction in the atmospheric dust load corresponding to a decreased dust source flux. That is, there is a negative feedback in the climate system due to the radiative effect of dust. The dust source flux and its changes were analyzed in more detail for the main dust source regions. This analysis shows that the reduction varies both with the season and with the single scattering albedo of the dust particles. By examining the correlation with the surface wind, it was found that the dust emission from the Saharan/Sahelian source region and from the Arabian peninsula, along with the sensitivity of the emission to the single scattering albedo of dust particles, are related to large scale circulation patterns, in particular to the trade winds during Northern Hemisphere winter and to the Indian monsoon circulation during summer. In the other regions, such relations to the large scale circulation were not found. There, the dependence of dust deflation to radiative forcing by dust particles is probably dominated by physical processes with short time scales. The experiments show that dust radiative forcing can lead to significant changes both in the soil dust cycle and in the climate state. To estimate dust concentration and radiative forcing by dust more accurately, dust size distributions and dust single scattering albedo in the model should be a function of the source region, because dust concentration and climate response to dust radiative forcing are sensitive to dust radiative parameters.

Perlwitz, Jan↗