Depth variation of cosmogenic nuclides in a lunar surface rock and lunar soil
Depth profiles of cosmogenic radionuclides in lunar rocks and soil samples from Apollo 11 and 12 flights, considering solar particle flux and spectra
Arnold, J. R.↗
SEARCH · Engineering Papers
Results for “soil depth”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Depth-dependent Metagenome-Assembled Genomes of Agricultural Soils under Managed Aquifer Recharge
Abstract Managed Aquifer Recharge (MAR) systems, which intentionally replenish groundwater aquifers with excess water, are critical for addressing water scarcity exacerbated by demographic shifts and climate variability. To date, little is known about the functional diversity of the soil microbiome at different soil depth inhabiting agricultural soils used for MAR. Knowing the functional diversity is pivotal in regulating nutrient cycling and maintaining soil health. Metagenomics, particularly Metagenome-Assembled Genomes (MAGs), provide a powerful tool to explore the diversity of uncultivated soil microbes, facilitating in-depth investigations into microbial functions. In a field experiment conducted in a California vineyard, we sequenced soil DNA before and after water application of MAR. Through this process, we assembled 146 medium and 14 high-quality MAGs, uncovering a wide array of archaeal and bacterial taxa across different soil depths. These findings advance our understanding of the microbial ecology and functional diversity of soils used for MAR, contributing to the development of more informed and sustainable land management strategies.
Science & Technology - Other Topics↗
Degradation Reduces Microbial Richness and Alters Microbial Functions in an Australian Peatland
Abstract Peatland ecosystems cover only 3% of the world’s land area; however, they store one-third of the global soil carbon (C). Microbial communities are the main drivers of C decomposition in peatlands, yet we have limited knowledge of their structure and function. While the microbial communities in the Northern Hemisphere peatlands are well documented, we have limited understanding of microbial community composition and function in the Southern Hemisphere peatlands, especially in Australia. We investigated the vertical stratification of prokaryote and fungal communities from Wellington Plains peatland in the Australian Alps. Within the peatland complex, bog peat was sampled from the intact peatland and dried peat from the degraded peatland along a vertical soil depth gradient (i.e., acrotelm, mesotelm, and catotelm). We analyzed the prokaryote and fungal community structure, predicted functional profiles of prokaryotes using PICRUSt, and assigned soil fungal guilds using FUNGuild. We found that the structure and function of prokaryotes were vertically stratified in the intact bog. Soil carbon, manganese, nitrogen, lead, and sodium content best explained the prokaryote composition. Prokaryote richness was significantly higher in the intact bog acrotelm compared to degraded bog acrotelm. Fungal composition remained similar across the soil depth gradient; however, there was a considerable increase in saprotroph abundance and decrease in endophyte abundance along the vertical soil depth gradient. The abundance of saprotrophs and plant pathogens was two-fold higher in the degraded bog acrotelm. Soil manganese and nitrogen content, electrical conductivity, and water table level (cm) best explained the fungal composition. Our results demonstrate that both fungal and prokaryote communities are shaped by soil abiotic factors and that peatland degradation reduces microbial richness and alters microbial functions. Thus, current and future changes to the environmental conditions in these peatlands may lead to altered microbial community structures and associated functions which may have implications for broader ecosystem function changes in peatlands.
Environmental Sciences & Ecology↗
Monitoring of ground water table depth and soil moisture at the Point Reyes field site
Ground water table (GWT) depth and soil moisture (SM) have been monitored at several locations at the Point Reyes field site (Californian coastal grassland) from 2021 to 2024. Monitoring is still on-going and data may be added to this archive at later time. The SM data have been acquired using Teros 12 Meter soil moisture sensors placed at 10, 30, 60 and 90 cm depth at 5 locations along a small hillslope. These sensors also collect soil temperature and bulk conductance. In addition, some collocated sensors provide pore pressure and Photochemical Reflectance Index (PRI). The GWT depth has been inferred from various type of Onset pressure transducers. The pressure measurements have been corrected for atmospheric pressure variations and sensor position relative to the ground surface to infer GWT depth, as well as with RTK GPS data to infer GWT elevation. The GWT data have been acquired at 5 distinct locations from 2020 to 2024 with the sensors placed at about 4 m depth. In addition, GWT data has been acquired for the 2023-2024 period with sensors located in 1 m deep shallow wells installed near each deeper well. This data is intended to evaluate possibly different dynamic in shallow (perched) and deep aquifer. The datasets are all provided in csv format. Please note that the interpretation of the GWT data needs to be done with consideration of environmental and well characteristics at the site and uncertainty in various variables. For more information on GWT and SM data, please contact the author.
54 ENVIRONMENTAL SCIENCES↗
Plant physiology, shrub size, thaw depth and soil water content, Seward Peninsula, Alaska, 2023
Stomatal response to changing irradiance measurements (m curves), CO2 response (ACi) and light response (AQ) curves on common tussock tundra shrub, graminoid and forb species. Data were collected in July 2023 from three sites on the Seward Peninsula, Kougarok Mile 64, Teller Mile 27 and Council. Measurements were made with LI-COR LI-6800 gas exchange systems on 18 species. For samples from Teller and Kougarok, thaw depth, soil moisture content and dGPS locations are also provided for most samples. Canopy height and canopy diameter are provided for shrubs measured at the Teller site. The data package files include data files, metadata files and the complete instrument output for all gas exchange measurements in .csv format, and a pdf describing the experimental protocols. See the related data package NGA508 for foliar trait data (leaf mass per area, leaf nitrogen concentration).The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
54 ENVIRONMENTAL SCIENCES↗
Quantifying and Reducing Uncertainty in Microwave Vegetation Optical Depth and Soil Moisture Retrievals
Soil moisture and vegetation optical depth (VOD; related to vegetation water content) retrieved from SMAP and SMOS satellites are widely used for a range of hydrosphere and biosphere applications. However, while soil moisture has been globally well-validated, VOD validation has been sparse. Furthermore, simultaneously retrieval of these parameters results in uncertainties both individually in soil moisture and VOD retrievals as well as in compensation between the parameters. Here, we show global locations where soil moisture and VOD retrievals will have lower uncertainty, based on complementary brightness temperature information content and signal-to-noise ratio metrics. In these same locations, we show that error still propagates more into VOD. However, using VOD regularization algorithms, this error is greatly reduced, especially at sub-weekly timescales where algorithmic error can be most apparent. Despite these regularization approaches that reduce errors, there are yet vast differences in available global regularized retrievals originating from different algorithmic choices.
Passive microwave radiometry↗
The direct and indirect drivers shaping RNA viral communities in grassland soil
Recent studies have revealed diverse RNA viral communities in soils. Yet, how environmental factors influence soil RNA viruses remains largely unknown. Here, we recovered RNA viral communities from 24 metatranscriptomes sequenced from grassland soils managed under a range of environmental conditions including 1) water content: 100% and 25% water holding capacity, 2) plant presence: planted with tall wheatgrass (Thinopyrum ponticum) and bare soil, 3) cultivar type: Alkar and Jose, and 4) soil depth: 0-5 cm and 15-25 cm. The recovered RNA viral communities were novel with nearly one-third of the RNA viral contigs uniquely detected in the studied grassland. The classified RNA viral contigs are mostly known as eukaryotic RNA viruses (74.7%) belonging to Phyla Duplornaviricota, Kitrinoviricota, Lenarviricota, and Pisuviricota. Eukaryotic RNA viruses of Family Mitoviridae as well as their natural hosts, Fungi, are one of the most dominant taxa. Consistent with the results of nonmetric multidimensional scaling analysis, the four environmental conditions (water content, plant presence, cultivar, and soil depth) significantly influence the assemblages of soil RNA viral communities as suggested by the correlation analysis and the random forest algorithm. The modularity analysis of the factor network and the structural equation modeling further support the hierarchical associations among the four environmental factors and the community factors representing the co-existing eukaryotic, prokaryotic, and RNA viral communities. The soil water content, plant presence, and type of cultivar demonstrate a significant positive impact on eukaryotic RNA viral richness directly as well as indirectly on eukaryotic RNA viral abundance via influencing the co-existing eukaryotic members in this soil. Our data also provide statistical support for the negative influence of soil depth on soil eukaryotic richness and abundances resulting in its indirect impact on soil eukaryotic RNA viral communities. This study provides field-relevant information on how environmental and community factors collectively shape soil RNA communities and contribute to ecological understanding of RNA viral survival under various environmental conditions and virus-host interactions in soil.
Wu, Ruonan↗
The direct and indirect drivers shaping RNA viral communities in grassland soils
ABSTRACT Recent studies have revealed diverse RNA viral communities in soils. Yet, how environmental factors influence soil RNA viruses remains largely unknown. Here, we recovered RNA viral communities from bulk metatranscriptomes sequenced from grassland soils managed for 5 years under multiple environmental conditions including water content, plant presence, cultivar type, and soil depth. More than half of the unique RNA viral contigs (64.6%) were assigned with putative hosts. About 74.7% of these classified RNA viral contigs are known as eukaryotic RNA viruses suggesting eukaryotic RNA viruses may outnumber prokaryotic RNA viruses by nearly three times in this grassland. Of the identified eukaryotic RNA viruses and the associated eukaryotic species, the most dominant taxa were Mitoviridae with an average relative abundance of 72.4%, and their natural hosts, Fungi with an average relative abundance of 56.6%. Network analysis and structural equation modeling support that soil water content, plant presence, and type of cultivar individually demonstrate a significant positive impact on eukaryotic RNA viral richness directly as well as indirectly on eukaryotic RNA viral abundance via influencing the co-existing eukaryotic members. A significant negative influence of soil depth on soil eukaryotic richness and abundance indirectly impacts soil eukaryotic RNA viral communities. These results provide new insights into the collective influence of multiple environmental and community factors that shape soil RNA viral communities and offer a structured perspective of how RNA virus diversity and ecology respond to environmental changes. IMPORTANCE Climate change has been reshaping the soil environment as well as the residing microbiome. This study provides field-relevant information on how environmental and community factors collectively shape soil RNA communities and contribute to ecological understanding of RNA viral survival under various environmental conditions and virus-host interactions in soil. This knowledge is critical for predicting the viral responses to climate change and the potential emergence of biothreats.
59 BASIC BIOLOGICAL SCIENCES↗
Data for "A 13-year record indicates differences in the duration and depth of soil carbon accrual among potential bioenergy crops"
Data sets for material included in "A 13-year record indicates differences in the duration and depth of soil carbon accrual among potential bioenergy crops" by Kantola et al., 2025, in Global Change Biology Bioenergy. Data include soil organic carbon (SOC), carbon stable isotope ratios, annual belowground biomass, and annual post-harvest litter for four crops, maize/soybean, miscanthus, switchgrass, and prairie, between 2008 and 2021.
bioenergy crops↗
Factors and processes governing the C-14 content of carbonate in desert soils
A model is presented describing the factors and processes which determine the measured C-14 ages of soil calcium carbonate. Pedogenic carbonate forms in isotopic equilium with soil CO2. Carbon dioxide in soils is a mixture of CO2 derived from two biological sources: respiration by living plant roots and respiration of microorganisms decomposing soil humus. The relative proportion of these two CO2 sources can greatly affect the initial C-14 content of pedogenic carbonate: the greater the contribution of humus-derived CO2, the greater the initial C-14 age of the carbonate mineral. For any given mixture of CO2 sources, the steady-state (14)CO2 distribution vs. soil depth can be described by a production/diffusion model. As a soil ages, the C-14 age of soil humus increases, as does the steady-state C-14 age of soil CO2 and the initial C-14 age of any pedogenic carbonate which forms. The mean C-14 age of a complete pedogenic carbonate coating or nodule will underestimate the true age of the soil carbonate. This discrepancy increases the older a soil becomes. Partial removal of outer (and younger) carbonate coatings greatly improves the relationship between measured C-14 age and true age. Although the production/diffusion model qualitatively explains the C-14 age of pedogenic carbonate vs. soil depth in many soils, other factors, such as climate change, may contribute to the observed trends, particularily in soils older than the Holocene.
Amundson, Ronald↗
A 13‐Year Record Indicates Differences in the Duration and Depth of Soil Carbon Accrual Among Potential Bioenergy Crops
Six years after replacing a maize/soybean cropping system, perennial grasses miscanthus (Miscanthus × giganteus) and switchgrass (Panicum virgatum), and a 28-species restored prairie increased particulate organic carbon in surface soils without increasing soil organic carbon (SOC). To resolve potential changes in the quantity and distribution of SOC, soils were resampled after seven to thirteen years to measure bulk density, carbon (C) content, and stable C isotopes to a depth of 1 m. SOC stocks increased between 1.75 and 2.5 Mg ha −1 year −1 in all perennial crops between 2008 and 2016 (nine growing seasons). Despite relatively low litter inputs and belowground biomass, the highest rate of SOC accrual was in restored prairie (2.5 Mg ha −1 year −1 ), followed by miscanthus (2.0 Mg ha −1 year −1 ) and switchgrass (1.75 Mg ha −1 year −1 ). The change in SOC in maize/soybean was not significant. After 2016, total SOC decreased in maize/soybean and miscanthus, resulting in slower overall rates of SOC accumulation over the full sampling period for miscanthus (0.8 Mg ha −1 year −1 ). The rate of SOC accumulation was greatest below 50 cm depth for restored prairie and switchgrass but in the top 10 cm for miscanthus. Stable isotope analysis showed 13 C enrichment in all depths of switchgrass soils, an indication of new organic C accumulation, but mixed results in all other crops. Planting perennial crops on land formerly in an annual maize/soybean cropping system can slow or reverse soil carbon losses, with the greatest increases in SOC from species-rich prairie.
agriculture↗
Permafrost microbial communities and functional genes are structured by latitudinal and soil geochemical gradients
Permafrost underlies approximately one quarter of Northern Hemisphere terrestrial surfaces and contains 25–50% of the global soil carbon (C) pool. Permafrost soils and the C stocks within are vulnerable to ongoing and future projected climate warming. The biogeography of microbial communities inhabiting permafrost has not been examined beyond a small number of sites focused on local-scale variation. Permafrost is different from other soils. Perennially frozen conditions in permafrost dictate that microbial communities do not turn over quickly, thus possibly providing strong linkages to past environments. Thus, the factors structuring the composition and function of microbial communities may differ from patterns observed in other terrestrial environments. Here, we analyzed 133 permafrost metagenomes from North America, Europe, and Asia. Permafrost biodiversity and taxonomic distribution varied in relation to pH, latitude and soil depth. The distribution of genes differed by latitude, soil depth, age, and pH. Genes that were the most highly variable across all sites were associated with energy metabolism and C-assimilation. Specifically, methanogenesis, fermentation, nitrate reduction, and replenishment of citric acid cycle intermediates. This suggests that adaptations to energy acquisition and substrate availability are among some of the strongest selective pressures shaping permafrost microbial communities. The spatial variation in metabolic potential has primed communities for specific biogeochemical processes as soils thaw due to climate change, which could cause regional- to global- scale variation in C and nitrogen processing and greenhouse gas emissions.
59 BASIC BIOLOGICAL SCIENCES↗
Microwave emission from smooth bare fields and soil moisture sampling depth
This paper studies the depth to which soil moisture can be directly estimated with microwave measurements over smooth bare fields. The analyses are based on both theoretical and experimental considerations at the frequencies of 1.4, 5.0, and 10.7 GHz. Radiative transfer calculations of microwave emissivities at these frequencies are performed with a number of moisture profiles measured for two soils. The calculated emissivities are compared with those derived from the Fresnel equation to deduce the microwave sampling depth in soils. The data acquired from the ground-level radiometric measurements during the summers of 1979-1981 are examined and compared with the theoretical analysis. Both theoretical and experimental analyses lead to the conclusion that the microwave samplinhg depth in soils is about one tenth of the wavelength of observation. It is shown that the moisture content at any depth near the surface of a smooth soil can be estimated, in principle, by a combination of a radiometric measurement and a curve generated by the Fresnel equation at an appropriate frequency, provided that the texture of the soil is known.
Wang, James R.↗
Active layer depth and soil properties impact specific leaf area variation and ecosystem productivity in a boreal forest
Specific leaf area (SLA, leaf area per unit dry mass) is a key canopy structural characteristic, a measure of photosynthetic capacity, and an important input into many terrestrial process models. Although many studies have examined SLA variation, relatively few data exist from high latitude, climate-sensitive permafrost regions. We measured SLA and soil and topographic properties across a boreal forest permafrost transition, in which dominant tree species changed as permafrost deepened from 54 to >150 cm over 75 m hillslope transects in Caribou-Poker Creeks Research Watershed, Alaska. We characterized both linear and threshold relationships between topographic and edaphic variables and SLA and developed a conceptual model of these relationships. We found that the depth of the soil active layer above permafrost was significantly and positively correlated with SLA for both coniferous and deciduous boreal tree species. Intraspecific SLA variation was associated with a fivefold increase in net primary production, suggesting that changes in active layer depth due to permafrost thaw could strongly influence ecosystem productivity. While this is an exploratory study to begin understanding SLA variation in a non-contiguous permafrost system, our results indicate the need for more extensive evaluation across larger spatial domains. These empirical relationships and associated uncertainty can be incorporated into ecosystem models that use dynamic traits, improving our ability to predict ecosystem-level carbon cycling responses to ongoing climate change.
59 BASIC BIOLOGICAL SCIENCES↗
Soil carbon, nitrogen, and ice content data (2014-2018) at Happy Valley and Sagwon Hills in Northern Alaska, United States
This dataset contains three data files from soil data collected by sampling soil cores and pits across a toposequence on two hillslopes in permafrost affected soils in Northern Alaska, USA. Soil cores and profiles were excavated to 3m or until auger refusal. Samples were collected by genetic soil horizons for laboratory analysis and organized into complete soil profiles ordered depth. Soil carbon, nitrogen, and ice stocks (stocks_by_core.csv) were calculated from the core dataset . Data for mean values by depth increments (20,50,100,150,200 cm) of total soc, total nitrogen, bulk density, and ice content were determined and made available in this dataset (soc-tn-bd-ice-slab_tables.csv). Stocks by site are included in a separate file (stocks_by_site.csv). Each of these three files also has an associated data dictionary file (stocks_by_core_dd.csv, soc-tn-bd-ice-slab_tables_dd.csv, stocks_by_site_dd.csv). Finally, an FLMD file is also included (FLMD_Happy_Valley_Sagwon.csv).
54 ENVIRONMENTAL SCIENCES↗
Controls and variability of soil respiration temperature sensitivity across China
Understanding the temperature sensitivity (Q 10 ) of soil respiration is critical for benchmarking the potential intensity of regional and global terrestrial soil carbon fluxes-climate feedbacks. Although field observations have demonstrated the strong spatial heterogeneity of Q 10 , a significant knowledge gap still exists regarding to the factors driving spatial and temporal variabilities of Q 10 at regional scales. Here, therefore, we used a machine learning approach to predict Q 10 from 1994 to 2016 with a spatial resolution of 1 km across China from 515 field observations at 5 cm soil depth using climate, soil and vegetation variables. Predicted Q 10 varied from 1.54 to 4.17, with an area-weighted average of 2.52. There was no significant temporal trend for Q 10 (p = 0.32), but annual vegetation production (indicated by normalized difference vegetation index, NDVI) was positively correlated to it (p < 0.01). Spatially, soil organic carbon (SOC) was the most important driving factor in 62 % of the land area across China, and varied greatly, demonstrating soil controls on the spatial pattern of Q 10 . These findings highlighted different environmental controls on the spatial and temporal pattern of soil respiration Q 10 , which should be considered to improve global biogeochemical models used to predict the spatial and temporal patterns of soil carbon fluxes to ongoing climate change.
54 ENVIRONMENTAL SCIENCES↗
Winter warming rapidly increases carbon degradation capacities of fungal communities in tundra soil: Potential consequences on carbon stability
We report high-latitude tundra ecosystems are increasingly affected by climate warming. As an important fraction of soil microorganisms, fungi play essential roles in carbon degradation, especially the old, chemically recalcitrant carbon. However, it remains obscure how fungi respond to climate warming and whether fungi, in turn, affect carbon stability of tundra. In a 2-year winter soil warming experiment of 2°C by snow fences, we investigated responses of fungal communities to warming in the active layer of an Alaskan tundra. Although fungal community composition, revealed by the 28S rRNA gene amplicon sequencing, remained unchanged (p > .05), fungal functional gene composition, revealed by a microarray named GeoChip, was altered (p < .05). Changes in functional gene composition were linked to winter soil temperature, thaw depth, soil moisture, and gross primary productivity (canonical correlation analysis, p < .05). Specifically, relative abundances of fungal genes encoding invertase, xylose reductase and vanillin dehydrogenase significantly increased (p < .05), indicating higher carbon degradation capacities of fungal communities under warming. Accordingly, we detected changes in fungal gene networks under warming, including higher average path distance, lower average clustering coefficient and lower percentage of negative links, indicating that warming potentially changed fungal interactions. Together, our study reveals higher carbon degradation capacities of fungal communities under short-term warming and highlights the potential impacts of fungal communities on tundra ecosystem respiration, and consequently future carbon stability of high-latitude tundra.
59 BASIC BIOLOGICAL SCIENCES↗
Measuring and modeling soil moisture and runoff at solar farms using a disconnected impervious surface approach
Abstract Ground‐mounted photovoltaic sites are often treated as impervious surfaces in stormwater permits. This ignores the pervious soils beneath and between solar arrays and leads to an overestimation of runoff. Our objective was to improve solar farm stormwater hydrology models by explicitly considering the disconnected impervious nature of solar design and site characteristics. Experimental sites established on utility scale solar farms in Colorado, Georgia, Minnesota, New York, and Oregon had perennial vegetative plantings with mean precipitation ranging from 40.6 to 124.5 cm, and soil texture ranging from loamy sand to clay. Soil moisture measurements were collected beneath arrays, under drip edges, and in the vegetated area between arrays at each site. Hydrus‐3D models for soil moisture and stormwater hydrology were developed that accounted for precipitation falling on solar panels, drip edge redistribution of rainfall, infiltration, and runoff in the pervious areas between solar arrays and beneath panels. Drip edge runoff averaged 3‐ to 10‐times incident precipitation at the New York and Minnesota sites, respectively. Root mean square error values between measured sub‐hourly soil moisture and predicted moisture for large measured single storm events averaged 0.029 across all five sites. Predicted runoff depths were strongly affected by precipitation depth, soil texture, soil profile depth, and soil bulk density. Runoff depths across the five experimental sites averaged 13%, 25%, and 45% of the 2‐, 10‐, and 100‐year design storm depths, clearly showing that these solar farms do not behave like impervious surfaces, but rather as disconnected impervious surfaces with substantial infiltration of runoff in the vegetated areas between and beneath solar arrays.
Agriculture↗