Heat stress during reproductive stages reduces camelina seed productivity and changes seed composition
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Growing AlN crystals on SiC seeds: Effects of growth temperature and seed orientation
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Hu, Weijie↗
Crystal structure of hetero hexameric 11S seed storage protein of hazelnut
Not provided.
Plant Sciences↗
An omnivorous mesopredator modifies predation of omnivore-dispersed seeds
Post-dispersal seed predation is an important determinant of plant recruitment. Although many plant species are dispersed following consumption by omnivorous vertebrates, the potential for these dispersal agents to indirectly affect seed fate by modifying seed predator behavior is poorly understood. We evaluated the hypothesis that the scat of an omnivorous vertebrate (coyote, Canis latrans), which is also a rodent predator, would reduce seed predation by rodent granivores. We also hypothesized that scat would lead to increased removal by arthropod seed predators by providing a resource that attracts ants and other arthropods. We examined the role of omnivore deposition on seed predation of two animal-dispersed species that differed in size: Larger Prunus serotina seeds are attacked only by rodents, whereas smaller Rubus allegheniensis seeds are attacked by arthropods and rodents. Using an experiment that manipulated the presence of coyote scat and access by different granivore guilds, we found that scat reduced the total number of seeds removed from full-access depots by 12%, but it increased the total number of seeds removed from arthropod-only depots by 43%. Rodent removal of P. serotina seeds was 21% lower in the presence of scat. Scat composition was also important in affecting rodent seed predation, with seed predation 50% lower in the presence of meat-rich scat compared with mixed or fruit-rich scat. Arthropod removal of R. allegheniensis seeds was 43% higher in the presence of scat. Prunus serotina seeds were generally removed at greater rates than R. allegheniensis seeds in full-access trays; however, scat reduced this difference in removal rates from 37% more P. serotina seeds removed to 18% more P. serotina seeds removed. These findings illuminate a new pathway through which omnivores may influence plant populations by modifying post-dispersal seed predation by arthropods and rodents. Moreover, our results indicate that the ultimate effect of vertebrate omnivores on seed survival in a given region may depend upon omnivore diet, dominant seed predator guilds, and differences in granivore seed preference.
60 APPLIED LIFE SCIENCES↗
Past and present disturbances generate spatial variation in seed predation
Seed survival is a key process for plant populations; variation in the activity and abundance of animals that consume seeds can lead to dramatic shifts in seed fate. Because granivores may respond to contemporary disturbance as well as to enduring changes in habitats caused by past disturbances, understanding seed fate requires studies capable of evaluating how past and present disturbances modify granivore communities, foraging activity, and ultimately, seed predation. Historic agricultural land use and contemporary canopy harvesting are widespread disturbances that could generate large-scale patterns of seed fate by modifying environmental characteristics that determine granivore identity and behavior. Here, to evaluate whether land-use history and canopy harvesting affect seed–animal interactions, we conducted an experiment distributed across 80,000 ha of longleaf pine woodlands that coupled large-scale canopy harvesting at seven 4-ha sites containing both post-agricultural land use and nonagricultural land use in South Carolina, United States. We deployed a total of 28,000 nail-tagged seeds and recovered the tags to quantify seed fate. Past agricultural land use and contemporary canopy harvesting interacted to affect the rate of seed predation. Seed predation rates in harvested sites depended on land-use history: Seed predation was 30% lower in post-agricultural plots than in nonagricultural plots. This interaction was driven by the differential effect of land-use history and canopy harvesting on rodent activity. Camera traps revealed that Sigmodon hispidus only foraged in harvested plots and was most active in nonagricultural plots. In harvested plots, seed removal increased with S. hispidus activity. In unharvested plots, seed removal increased with Sciurus niger activity, but S. niger was not affected by land-use history. In finding that land-use history and canopy harvesting determine the outcomes of seed–animal interactions, we show that understanding patterns of seed predation is contingent upon the interplay of disturbances in both the distant past and recent past. These results suggest that patterns of past land use and present land use may help reconcile the considerable variation in seed fate observed in ecological communities.
60 APPLIED LIFE SCIENCES↗
Genetic and Biochemical Investigation of Seed Fatty Acid Accumulation in Arabidopsis
As a vegetable oil, consisting principally of triacylglycerols, is the major storage form of photosynthetically-fixed carbon in oilseeds which are of significant agricultural and industrial value. Photosynthesis in chlorophyll-containing green seeds, along with photosynthesis in leaves and other green organs, generates ATP and reductant (NADPH and NADH) needed for seed fatty acid production. However, contribution of seed photosynthesis to fatty acid accumulation in seeds have not been well-defined. Here, we report the contribution of seed-photosynthesis to fatty acid production by probing segregating green (photosynthetically-competent) and non-green or yellow (photosynthetically-non-competent) seeds in siliques of an Arabidopsis chlorophyll synthase mutant. Using this mutant, we found that yellow seeds lacking photosynthetic capacity reached 80% of amounts of oil in green seeds at maturity. Combining this with studies using shaded siliques, we determined that seed-photosynthesis accounts for 20% and silique and leaf/stem photosynthesis each account for ~40% of the ATP and reductant for seed oil production. Transmission electron microscopy (TEM) and pyridine nucleotides and ATP analyses revealed that seed photosynthesis provides ATP and reductant for oil production mostly during early development, as evidenced by delayed oil accumulation in non-green seeds. Transcriptomic analyses suggests that the oxidative pentose phosphate pathway could be the source of carbon, energy and reductants required for fatty acid synthesis beyond the early stages of seed development.
Nwafor, Chinedu Charles↗
Role of Cell Wall Polysaccharides in Water Distribution During Seed Imbibition of Hymenaea courbaril L.
Seed water imbibition is critical to seedling establishment in tropical forests. The seeds of the neotropical tree Hymenaea courbaril have no oil reserves and have been used as a model to study storage cell wall polysaccharide (xyloglucan - XyG) mobilization.We studied pathways of water imbibition in Hymenaea seeds. To understand seed features, we performed carbohydrate analysis and scanning electron microscopy. We found that the seed coat comprises a palisade of lignified cells, below which are several cell layers with cell walls rich in pectin. The cotyledons are composed mainly of storage XyG. From a single point of scarification on the seed surface, we followed water imbibition pathways in the entire seed using fluorescent dye and NMRi spectroscopy. We constructed composites of cellulose with Hymenaea pectin or XyG. In vitro experiments demonstrated cell wall polymer capacity to imbibe water, with XyG imbibition much slower than the pectin-rich layer of the seed coat.We found that water rapidly crosses the lignified layer and reaches the pectin-rich palisade layer so that water rapidly surrounds the whole seed. Water travels very slowly in cotyledons (most of the seed mass) because it is imbibed in the XyG-rich storage walls. However, there are channels among the cotyledon cells through which water travels rapidly, so the primary cell walls containing pectins will retain water around each storage cell.The different seed tissue dynamic interactions between water and wall polysaccharides (pectins and XyG) are essential to determining water distribution and preparing the seed for germination.
arabinoxylan↗
Symmetry in Seeded Metal Nanocrystal Growth
Symmetry underpins the structure and function of the world around us and is also captured in modern nanomaterials, where changing the symmetry of a nanocrystal or the interparticle spacing and orientation of nanocrystal building blocks in a superlattice can give new function. However, the synthesis and assembly of nanocrystals have been limited largely to simple compositions and structures. It remains a grand challenge to achieve nanocrystals with compositional and structural complexity while maintaining the monodispersity required for their use. This Account will illustrate through recent examples that seeded methods enable the synthesis of compositionally and structurally complex multimetallic crystals with defined and predictable symmetries for applications in plasmonics and catalysis. This outcome arises because the barrier for heterogeneous nucleation (i.e., seeded) is lower than that of homogeneous nucleation, where seeds can serve as preferential sites for the growth of complex structures and crystal phases. Our analysis begins by considering metal overgrowth from single-crystalline seeds of different shapes and symmetries, where the kinetics of adatom addition to seeds relative to their diffusion across seeds accounts for the expressed nanocrystal shapes. These results are then compared to overgrowth from seeds with different internal structures (i.e., planar defects), where the relationships between nanocrystal size and volumetric strain energy and surface energy are discussed. A major finding from this analysis is that often the underlying symmetry of seeds can be predictably transferred to the final crystals during overgrowth processes. Consequences of this finding are the predictable syntheses of crystals with different hierarchies akin to snowcrystals as well as nanocrystals with complex compositions (e.g., quaternary nanoparticles). Yet, there are subtle aspects to seeded growth that pave a path toward examples where nanocrystal symmetry has been reduced compared to the original seeds in a controlled manner. As we found, both the concentrations of metal precursors and capping agents can impact whether symmetry is transferred or reduced during overgrowth. Examples from our laboratory will be placed in context to other reported strategies for symmetry breaking. As will be argued, understanding what conditions favor symmetry preservation versus symmetry reduction during seeded crystal growth is central to accessing next-generation crystal forms. The Account concludes by outlining synthetic challenges associated with forming nanoscale heterostructures with precise 3-D placement of different materials within a given nanocrystal as well as facet control within different material domain and interface engineering. Furthermore, we envision meeting these challenges through regioselective and chemoselective seeded syntheses for which a foundation is outlined herein.
36 MATERIALS SCIENCE↗
Little prairie under the panel: testing native pollinator habitat seed mix establishment at three utility-scale solar sites in Minnesota
Abstract As more land is being utilized for large-scale solar energy projects, there are increasing discussions from stakeholders on how to utilize land under solar panels to promote biodiversity. One path is to plant habitat beneficial to pollinators and other insects, but there have been few long-term studies that examine how different vegetation and seed mixes establish underneath solar panels. This study addresses a scientific gap to determine whether native pollinator seed mixes successfully establish over time under solar arrays using a systematic assessment of eight seed mixes planted at three utility-scale solar sites in Minnesota. We assess establishment with a percent native coverage metric, which is an assessment of native species observations compared to total observations during percent cover analyses in our vegetative test plots. The percent native coverage metric allows for a measurement of how the seed mix established and how the seed mix persists over time. The percent native coverage under and in between the solar photovoltaic (PV) arrays rose from 10% after one year of planting to 58% after three years across all sites, while the native coverage of the full sun control area rose from 9.6% to 70% under the same period, showing that native prairie and pollinator plants successfully established under the array, although to a lesser extent than in full sun conditions. Percent native coverage under the PV arrays rose 5- to 8-fold for each of the three sites from over the course of the study, while the coverage of weeds decreased for all three sites over the same period. Percent native coverage varied by seed mix over the project years, but every seed mix experienced a higher percent native coverage year after year under the PV arrays. Our results did not indicate a difference in establishment across placement within the array; the center, west, and east portions of the areas in between panels had similar establishment rates at two out of three sites, indicating that the same seed mix can be applied throughout the array. Out of 101 plant species seeded, we observed the establishment of 68 species in our vegetative test plots, and we detailed the top 20 observed species to inform future seed mix development. Based on these findings, native pollinator vegetation can establish over time at solar arrays, and it can be suitable for creating habitat at utility-scale solar sites.
14 SOLAR ENERGY↗
Red Wine Fermentation Alters Grape Seed Morphology and Internal Porosity
During wine fermentation, grape berry components, including seeds, undergo extensive physical and chemical changes that result in the release of flavonoids, such as tannins, from seeds into wine. Understanding changes in seed morphology during fermentation is crucial for aiding the development of accurate prediction models for flavonoid extraction during winemaking, which enhances fermentation management and ensures consistency in wines from year to year. High-resolution x-ray microcomputed tomography (x-ray μCT) was used to investigate the effect of red wine fermentation on changes in grape seed morphology. Using a PyTorch-based implementation of a fully convolutional network with a Resnet-101 backbone for semantic segmentation of x-ray μCT images, we quantified extensive alteration to grape seed structure during fermentation. Image analyses revealed the development of a pore network breaking apart the seed endosperm by the end of fermentation, leading to an increase in surface area. Fermentation significantly altered grape seed morphology. Such alterations could enable transport of seed flavonoids from inside the endosperm and integument to outside the seed. Further research on the physical processes occurring in seeds during wine fermentation is necessary to build better physiochemical models.
59 BASIC BIOLOGICAL SCIENCES↗
Speeding-up fuzzing through directional seeds
Abstract Fuzzing is an automated process for discovering inputs in a program that may trigger unexpected behavior. Today, fuzzing has become a standard practice for the discovery of bugs and security vulnerabilities. However, the main issue with such practices is that the exploration of the input space of programs can often be prohibitively expensive. Therefore, several alternative fuzzing strategies have been introduced during the last few years. Some fuzzing techniques rely on human expertise to provide a plausible set of initial input examples, namely, seeds. However, the process of handcrafting seeds for fuzzing purposes often becomes strenuous for humans as it requires a deeper understanding of the Program-Under-Test (PUT). Also, the use of known inputs to programs often does not trigger vulnerable program behavior or may not reach potentially vulnerable code locations. To address those issues, we propose a seed generation framework that enables Human-In-The-Loop (HITL) directed fuzzing where the human assumes a more active role in the creation of seeds that can penetrate and assess desired locations of the PUT. Our proposed framework uses Symbolic Execution (SE) to generate seeds that exercise paths to target program locations. Moreover, our framework enables the visualization of the explored execution paths in the binary of the PUT for the generated seeds. We evaluated our approach on a set of 12 carefully designed C programs with diverse characteristics that mimic real-world programs. The experimental results show the effectiveness of the proposed approach in improving the performance of standard fuzzing tools such as the American Fuzzy Lop ("Image missing" <#comment/> ). Specifically, our solution can generate seeds that substantially enhance the performance of the fuzzer, achieving speedups ranging from $$1.46\times $$ 1.46 × to $$68.53\times $$ 68.53 × for branch conditions, $$1.39\times $$ 1.39 × to $$254.62\times $$ 254.62 × for branch depths, $$14,879.59\times $$ 14 , 879.59 × to $$30,295.88\times $$ 30 , 295.88 × for branch widths over traditional seeds. Additionally, the speedup increases with the number of target function ranging from $$12,260\times $$ 12 , 260 × to $$22,856.07\times $$ 22 , 856.07 × over traditional seeds while only requiring less than 15 seconds on average for the seed generation step.
97 MATHEMATICS AND COMPUTING↗
Nonspecific phospholipase C6 increases seed oil production in oilseed Brassicaceae plants
Summary Plant oils are valuable commodities for food, feed, renewable industrial feedstocks and biofuels. To increase vegetable oil production, here we show that the nonspecific phospholipase C6 (NPC6) promotes seed oil production in the Brassicaceae seed oil species Arabidopsis, Camelina and oilseed rape. Overexpression of NPC6 increased seed oil content, seed weight and oil yield both in Arabidopsis and Camelina, whereas knockout of NPC6 decreased seed oil content and seed size. NPC6 is associated with the chloroplasts and microsomal membranes, and hydrolyzes phosphatidylcholine and galactolipids to produce diacylglycerol. Knockout and overexpression of NPC6 decreased and increased, respectively, the flux of fatty acids from phospholipids and galactolipids into triacylglycerol production. Candidate‐gene association study in oilseed rape indicates that only BnNPC6.C01 of the four homeologues NPC6s is associated with seed oil content and yield. Haplotypic analysis indicates that the BnNPC6.C01 favorable haplotype can increase both seed oil content and seed yield. These results indicate that NPC6 promotes membrane glycerolipid turnover to accumulate TAG production in oil seeds and that NPC6 has a great application potential for oil yield improvement.
Cai, Guangqin↗
Expression of a Bacterial Trehalose 6-Phosphate Synthase Gene otsA in Camelina sativa Seeds Promotes the Channelling of Carbon Towards Oil Accumulation
Improving seed oil yield is essential for developing Camelina sativa as a sustainable biofuel crop. Fatty acid synthesis depends on the production of acetyl-CoA from photosynthetically derived sugars. Trehalose 6-phosphate (T6P), a proxy for sucrose availability, can link sugar status to plant growth and development. Synthesised by trehalose 6-phosphate synthase (TPS) from UDP-glucose and glucose-6-phosphate, T6P plays a regulatory role in metabolism. Our previous studies on Arabidopsis transgenic lines constitutively expressing the E. coli otsA (encoding TPS) showed increased T6P levels and seed triacylglycerol, along with stunted growth. In the present study we express otsA in camelina under the control of a seed-specific Phaseolin promoter. Seeds of the resulting transgenic lines accumulated high levels of T6P, and a 15%–20% increase in total fatty acids and triacylglycerol compared to wild-type. Molecular analysis showed the transgenic seeds had reduced SnRK1 activity, elevated WRI1 protein levels, and increased the levels of WRI1 and its target genes, along with enhanced rates of fatty acid synthesis that increased seed weights relative to wild type. Notably, the increase in oil did not affect seed protein levels but did reduce the soluble metabolite fraction. Crucially, seed-specific expression of otsA mitigated the growth defects associated with constitutive otsA expression, and the transgenic lines showed normal seed development and germination. These findings demonstrate that targeted T6P modulation via seed-specific otsA expression is an effective metabolic engineering strategy to boost oil production in camelina and potentially in other oilseed crops and bioenergy crops such as energycane, sorghum and miscanthus.
59 BASIC BIOLOGICAL SCIENCES↗
Pectin methyltransferase QUASIMODO2 functions in the formation of seed coat mucilage in Arabidopsis
Pectin, cellulose, and hemicelluloses are major components of primary cell walls in plants. In addition to cell adhesion and expansion, pectin plays a central role in seed mucilage. Seed mucilage contains abundant pectic rhamnogalacturonan-I (RG-I) and lower amounts of homogalacturonan (HG), cellulose, and hemicelluloses. Previously, accumulated evidence has addressed the role of pectin RG-I in mucilage production and adherence. However, less is known about the function of pectin HG in seed coat mucilage formation. In this study, we analyzed a novel mutant, designated things fall apart2 (tfa2), which contains a mutation in HG methyltransferase QUASIMODO2 (QUA2). Etiolated tfa2 seedlings display short hypocotyls and adhesion defects similar to qua2 and tumorous shoot development2 (tsd2) alleles, and show seed mucilage defects. Here, the diminished uronic acid content and methylesterification degree of HG in mutant seed mucilage indicate the role of HG in the formation of seed mucilage. Cellulosic rays in mutant mucilage are collapsed. The epidermal cells of seed coat in tfa2 and tsd2 display deformed columellae and reduced radial wall thickness. Under polyethylene glycol treatment, seeds from these three mutant alleles exhibit reduced germination rates. Together, these data emphasize the requirement of pectic HG biosynthesis for the synthesis of seed mucilage, and the functions of different pectin domains together with cellulose in regulating its formation, expansion, and release.
59 BASIC BIOLOGICAL SCIENCES↗
Interzeolite Transformation through Cross-Nucleation: A Molecular Mechanism for Seed-Assisted Synthesis
Polymorph selection and efficient crystallization are central goals in zeolite synthesis. Crystalline seeds are used for both purposes. While it has been proposed that zeolite seeds induce interzeolite transformation by dissolving into structural units that promote nucleation of the daughter crystal, the seed’s structural elements do not always match those of the target zeolite. This discrepancy raises the question of how the seed promotes the daughter phase. Here, we present the first molecularly resolved investigation of seed-assisted zeolite synthesis. Using molecular simulations, we reproduce the experimental finding that a parent zeolite can promote the nucleation of a daughter zeolite even when it lacks common composite building units (CBUs) or crystal planes. Modeling the seed-assisted synthesis of an AFI-type zeolite using zeolite CHA, our simulations indicate that stand-alone CBUs from the parent seed do not facilitate daughter crystal formation. However, introducing the intact seed significantly reduces the synthesis time, supporting that seed integrity is key to increased efficiency. This reduction arises from the cross-nucleation of the AFI-type zeolite on the CHA (001) face. We find that parent and daughter zeolites are connected by an interfacial transition layer with an order distinct from that of both zeolites. Simulations reveal that cross-nucleation occurs over a broad range of synthesis conditions. We argue that cross-nucleation would be most favorable for zeolite pairs that share crystalline planes such as those forming intergrowths. In conclusion, our findings suggest that the prevalence of intergrowths with a common lattice plane in zeolite synthesis is likely a kinetic effect of accelerated cross-nucleation.
Crystallization↗
A modeling examination of cloud seeding conditions under the warmer climate in Utah, USA
Assessment of how the wintertime cloud seeding conditions over Utah's mountains may change provides essential information for the state to work on increasing its snowpack in the warmer climate. Here in this study, data from the National Center for Atmospheric Research's high-resolution, convection-permitting Weather Research and Forecasting model are used to evaluate suitable conditions for wintertime cloud seeding over Utah's mountains, and to estimate future changes to these conditions under a pseudo-global warming scenario. While previous studies have examined historical cloud seeding conditions, this is the first study that explores the impact of future climate change on these conditions. Based on two atmospheric variables commonly used in cloud-seeding operations, i.e. average temperature from the surface to 1 km above ground level (-20 °C≤T≤-6 °C) and vertically integrated supercooled liquid water (SLW > 0.01 mm), Utah's mountains are suitable for seeding more than 20% of the time during winter. A greater rate of suitability exists in the northern and Uinta Mountains. In the warmer climate under a high-emissions scenario, these seeding conditions may wane as the percentage of precipitating clouds suitable for seeding, about 60% under current conditions, would decline to about 40% across the state with significance. This projected decrease is due to rising temperatures and a decreased frequency of precipitation events. These findings imply that climate warming will narrow the window of opportunity for winter cloud seeding operation in Utah.
54 ENVIRONMENTAL SCIENCES↗
Nitrogen-seeded divertor detachment in TCV L-mode plasmas
Most of the detachment experiments done to date on the tokamak à configuration variable (TCV), both in standard and alternative divertor geometries, focused on L-mode integrated core density ramps. In view of extending these studies to high-power, high-confinement regimes, where impurity seeding will be necessary for detachment, the properties of nitrogen seeded L-mode detachment in TCV are assessed here with the extensive set of edge and divertor diagnostics and similarities and differences with integrated core density ($\langle n_e \rangle$) ramp detachment experiments are elucidated. It is found that in high current, reversed field plasmas, detachment at the outer target is achieved with N 2 -seeding and density ramps, with target heat flux reductions of up to 90%, while the inner target only detaches with seeding. The Scrape-Off Layer radiation fraction reaches values of 60%–80% and in all situations, a stable radiator can form around the X-point. In this work, the most striking difference between seeding and density ramp is the behavior of the upstream quantities. During the $\langle n_e \rangle$-ramp, a broadening of the upstream density profile (density ‘shoulder’) occurs, concurrent with the outer target ion flux roll-over, while no such behavior occurs during nitrogen seeded detachment. Separatrix density, electron temperature and pressure also evolve strongly with increasing density, and are largely unaffected by the injection of nitrogen. Comparison of upstream and target pressures reveals that, in all cases, the outer target ion flux reduction coincides with the development of a parallel gradient of the total pressure. Common to all cases is also a reduction of energy confinement time with detachment, although this effect is weak for seeding at relatively high density. Studying the impact of the ∇B-drift direction in both nitrogen seeding and core density ramps reveals that drifts mainly affect the behavior at the inner strike point, highlighting the need to include them in edge transport simulations.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Comparison of divertor behavior and plasma confinement between argon and neon seeding in EAST
The exhaust of excessively high heat and particle fluxes on the divertor target is crucial for EAST long-pulse operation. In the recent EAST experiments, stable partial energy detachment around the upper outer strike point with H 98,y2 ~ 1 was achieved with either Ne or Ar seeding from the upper outer divetor target in the upper single null configuration with ITER-like tungsten divertor. With either Ar or Ne seeding, the electron temperature around the upper outer strike point (T et,UOSP ) was maintained at around 5 eV, the peak temperature of divertor target surface around the upper outer strike point (T div,UO ) decreased significantly, and material sputtering was well suppressed. Here, it was observed that there was less Ar seeding needed for partial energy detachment onset than Ne seeding, which shows that Ar is more efficient in the cooling of T et on the upper outer divertor than Ne. However, there was no detachment on the upper inner divertor with T et around strike point (T et,UISP ) remaining >10 eV with either Ar or Ne seeding from the upper outer divertor. Accompanied with the disappearance of double peak phenomenon of ion flux density on the upper inner divertor target (j s,UI ), the peak T div,UI around the strike point increased to around 300 °C. Although the heat flux on the upper inner divertor target (q t,UI ) is still in the acceptable level, either Ar or Ne seeding only from the upper outer divertor target is not enough to protect the upper inner divertor target from sputtering under current EAST conditions. On the other hand, Ar seeding always causes confinement degradation in the partial energy detachment state. It was observed that there is a slight confinement improvement (~10%) with Ne seeding, which may be due to density peaking, dilution effects and stabilization of the ion temperature gradient mode.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗