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At least 37 records · Page 2

Pathway Model of the Kinetics of the TGFbeta Antagonist Smad7 and Cross-Talk with the ATM and WNT Pathways

Signal transduction controls cellular and tissue responses to radiation. Transforming growth factor beta (TGFbeta) is an important regulator of cell growth and differentiation and tissue homeostasis, and is often dis-regulated in tumor formation. Mathematical models of signal transduction pathways can be used to elucidate how signal transduction varies with radiation quality, and dose and dose-rate. Furthermore, modeling of tissue specific responses can be considered through mechanistic based modeling. We developed a mathematical model of the negative feedback regulation by Smad7 in TGFbeta-Smad signaling and are exploring possible connections to the WNT/beta -catenin, and ATM/ATF2 signaling pathways. A pathway model of TGFbeta-Smad signaling that includes Smad7 kinetics based on data in the scientific literature is described. Kinetic terms included are TGFbeta/Smad transcriptional regulation of Smad7 through the Smad3-Smad4 complex, Smad7-Smurf1 translocation from nucleus to cytoplasm, and Smad7 negative feedback regulation of the TGFO receptor through direct binding to the TGFO receptor complex. The negative feedback controls operating in this pathway suggests non-linear responses in signal transduction, which are described mathematically. We then explored possibilities for cross-talk mediated by Smad7 between DNA damage responses mediated by ATM, and with the WNT pathway and consider the design of experiments to test model driven hypothesis. Numerical comparisons of the mathematical model to experiments and representative predictions are described.

Carra, Claudio↗

How Does Escherichia coli Allocate Proteome?

Microorganisms are shown to actively partition their intracellular resources, such as pro- teins, for growth optimization. Recent experiments have begun to reveal molecular com- ponents unpinning the partition; however, it remains unclear quantitatively how individual parts orchestrate to yield precise resource allocation that is both robust and dynamic. Here we developed a coarse-grained mathematical framework that centers on guanosine pentaphosphate (ppGpp)-mediated regulation, and used it to systematically uncover the design principles of proteome allocation in Escherichia coli. Our results showed that cellular ability of resource partition lies in an ultrasensitive, negative feedback control- ling topology with the ultrasensitivity arising from zero-order amino acid kinetics and the negative feedback from ppGpp-controlled ribosome synthesis. In addition, together with the time-scale separation between slow ribosome kinetics and fast turnovers of ppGpp and amino acids, the network topology confers the organism an optimization mechanism which mimics sliding mode control, a nonlinear optimization strategy that is widely used in man-made systems. We further showed that such a controlling mechanism is robust against parameter variations and molecular fluctuations, and is also efficient for biomass production over time. Furthermore, this work elucidates the fundamental controlling mechanism of E. coli proteome allocation, thereby providing insights into quantitative microbial physiology as well as the design of synthetic gene networks.

59 BASIC BIOLOGICAL SCIENCES↗

FAST Discovery of a Fast Neutral Hydrogen Outflow

Abstract In this letter, we report the discovery of a fast neutral hydrogen outflow in SDSS J145239.38+062738.0, a merging radio galaxy containing an optical type I active galactic nucleus (AGN). This discovery was made through observations conducted by the Five-hundred-meter Aperture Spherical radio Telescope (FAST) using redshifted 21 cm absorption. The outflow exhibits a blueshifted velocity likely up to ∼−1000 km s −1 with respect to the systemic velocity of the host galaxy with an absorption strength of ∼−0.6 mJy beam −1 corresponding to an optical depth of 0.002 atv= −500 km s −1 . The mass outflow rate ranges between 2.8 × 10 −2 and 3.6M ⊙ yr −1 , implying an energy outflow rate ranging between 4.2 × 10 39 and 9.7 × 10 40 erg s −1 , assuming 100 K s< 1000 K. Plausible drivers of the outflow include the starbursts, AGN radiation, and radio jet, the last of which is considered the most likely culprit according to the kinematics. By analyzing the properties of the outflow, AGN, and jet, we find that if the Hioutflow is driven by the AGN radiation, the AGN radiation does not seem powerful enough to provide negative feedback, whereas the radio jet shows the potential to provide negative feedback. Our observations contribute another example of a fast outflow detected in neutral hydrogen and demonstrate the capability of FAST in detecting such outflows.

Astronomy & Astrophysics↗

Discrete-time stability of continuous-time controller designs for large space structures

In most of the stable control designs for flexible structures, continuous time is assumed. However, in view of the implementation of the controllers by on-line digital computers, the discrete-time stability of such controllers is an important consideration. In the case of direct-velocity feedback (DVFB), involving negative feedback from collocated force actuators and velocity sensors, it is not immediately apparent how much delay due to digital implementation of DVFB can be tolerated without loss of stability. The present investigation is concerned with such questions. A study is conducted of the discrete-time stability of DVFB, taking into account an employment of Euler's method of approximation of the time derivative. The obtained result gives an indication of the acceptable time-step size for stable digital implementation of DVFB. A result derived in connection with the consideration of the discrete-time stability of stable continuous-time systems provides a general condition under which digital implementation of such a system will remain stable.

Balas, M. J.↗

Biocybernetic system evaluates indices of operator engagement in automated task

A biocybernetic system has been developed as a method to evaluate automated flight deck concepts for compatibility with human capabilities. A biocybernetic loop is formed by adjusting the mode of operation of a task set (e.g., manual/automated mix) based on electroencephalographic (EEG) signals reflecting an operator's engagement in the task set. A critical issue for the loop operation is the selection of features of the EEG to provide an index of engagement upon which to base decisions to adjust task mode. Subjects were run in the closed-loop feedback configuration under four candidate and three experimental control definitions of an engagement index. The temporal patterning of system mode switching was observed for both positive and negative feedback of the index. The indices were judged on the basis of their relative strength in exhibiting expected feedback control system phenomena (stable operation under negative feedback and unstable operation under positive feedback). Of the candidate indices evaluated in this study, an index constructed according to the formula, beta power/(alpha power + theta power), reflected task engagement best.

Cerebral Cortex/physiology↗

Deriving Material Properties from Feedback Error Signals in Scanning Tunneling Microscopy

Imperfections in measurements, e.g., deviations and broadening, are not devoid of information; rather, they can reveal valuable physical properties and processes. Scanning tunneling microscopy leverages a negative feedback loop to regulate the tunneling current. Practically, current fluctuates around its set point, and such deviations are considered insignificant and ignored. Here, in this study, we investigate the information embedded in these deviations. In the constant-current mode with an active feedback loop, we observe an unexpected persistent DC current offset from its set point when the tunneling junction is periodically perturbed. We demonstrate both experimentally and theoretically that such error signals encode local tunneling barrier heights and the square of local differential conductance as a consequence of the interplay between rectification and active feedback compensation. We provide evidence on the generalizability of this phenomenology to other negative feedback systems. This new approach has the potential to broadly impact physical sciences by allowing rapid measurements without lock-in amplifiers.

36 MATERIALS SCIENCE↗

Deciphering the sensitivity of urban canopy air temperature to anthropogenic heat flux with a forcing-feedback framework

Abstract The sensitivity of urban canopy air temperature ( T a ) to anthropogenic heat flux ( Q A H ) is known to vary with space and time, but the key factors controlling such spatiotemporal variabilities remain elusive. To quantify the contributions of different physical processes to the magnitude and variability of Δ T a / Δ Q A H (where Δ represents a change), we develop a forcing-feedback framework based on the energy budget of air within the urban canopy layer and apply it to diagnosing Δ T a / Δ Q A H simulated by the Community Land Model Urban over the contiguous United States (CONUS). In summer, the median Δ T a / Δ Q A H is around 0.01 K W m − 2 − 1 over the CONUS. Besides the direct effect of Q A H on T a , there are important feedbacks through changes in the surface temperature, the atmosphere–canopy air heat conductance ( c a ), and the surface–canopy air heat conductance. The positive and negative feedbacks nearly cancel each other out and Δ T a / Δ Q A H is mostly controlled by the direct effect in summer. In winter, Δ T a / Δ Q A H becomes stronger, with the median value increased by about 20% due to weakened negative feedback associated with c a . The spatial and temporal (both seasonal and diurnal) variability of Δ T a / Δ Q A H as well as the nonlinear response of Δ T a to Δ Q A H are strongly related to the variability of c a , highlighting the importance of correctly parameterizing convective heat transfer in urban canopy models.

54 ENVIRONMENTAL SCIENCES↗

Century/millennium internal climate oscillations in an ocean-atmosphere-continental ice sheet model

We demonstrate in a simple climate model that there exist nonlinear feedbacks between the atmosphere, ocean, and ice sheets capable of producing century/millennium timescale internal oscillations resembling those seen in the paleoclimate record. Feedbacks involve meridional heat and salt transports in the North Atlantic, surface ocean freshwater fluxes associated with melting and growing continental ice sheets in the northen hemisphere and with Atlantic to Pacific water vapor transport. The positive feedback between the production of North Atlantic Deep Water (NADW) and the meridional salt transport by the Atlantic thermohaline circulation tends to destabilize the climate system, while the negative feedback between the freshwater flux, either to or from the continental ice sheets, and meridional heat flux to the high-latitude North Atlantic, accomplished by the thermohaline circulation, stabilizes the system. The thermohaline circulation plays a central role in both positive and negative feedbacks because of its transport of both heat and salt. Because of asymmetries between the growth and melt phases the oscillations are, in general, accompanied by a growing or decreasing ice volume over each cycle, which in the model is reflected by increasing or decreasing mean salinity.

Birchfield, Edward G.↗

Radiative feedbacks on land surface change and associated tropical precipitation shifts

Changes in land surface albedo and land surface evaporation modulate the atmospheric energy budget by changing temperatures, water vapor, clouds, snow and ice cover, and the partitioning of surface energy fluxes. Here idealized perturbations to land surface properties are imposed in a global model to understand how such forcings drive shifts in zonal mean atmospheric energy transport and zonal mean tropical precipitation. For a uniform decrease in global land albedo, the albedo forcing and a positive water vapor feedback contribute roughly equally to increased energy absorption at the top of the atmosphere (TOA), while radiative changes due to the temperature and cloud cover response provide a negative feedback and energy loss at TOA. Decreasing land albedo causes a northwards shift in the zonal mean intertropical convergence zone (ITCZ). The combined effects on ITCZ location of all atmospheric feedbacks roughly cancel for the albedo forcing; the total ITCZ shift is comparable to that predicted for the albedo forcing alone. For an imposed increase in evaporative resistance that reduces land evaporation, low cloud cover decreases in the northern mid-latitudes and more energy is absorbed at TOA there; longwave loss due to warming provides a negative feedback on the TOA energy balance and ITCZ shift. Imposed changes in land albedo and evaporative resistance modulate fundamentally different aspects of the surface energy budget. However, the pattern of TOA radiation changes due to the water vapor and air temperature responses are highly correlated for these two forcings because both forcings lead to near-surface warming.

54 ENVIRONMENTAL SCIENCES↗

Decomposing Cloud Radiative Feedbacks by Cloud-Top Phase

Changes in cloud scattering properties and emissivity that arise from atmospheric warming cause substantial radiative feedbacks in model projections of anthropogenic climate change, and the relative importance of the underlying mechanisms is poorly understood. One leading hypothesis is that ice-to-liquid conversions cause clouds to optically thicken, producing a major negative feedback. We test this hypothesis by developing a method to decompose cloud radiative feedbacks by cloud-top phase. The method is applied to an ensemble of six state-of-the-art global climate models run with prescribed sea surface temperature. In these simulations, the global mean of the net cloud scattering and emissivity feedback from cloud-phase conversions ranges from −0.17 to −0.01 W m −2 K −1 , while the overall net cloud feedback ranges from 0.02 to 0.91 W m −2 K −1 . The multimodel mean of the cloud scattering and emissivity feedback from cloud-phase conversions is approximately 19% of the magnitude of the multimodel mean of the overall cloud feedback (−0.10 vs 0.52 W m −2 K −1 ). These results indicate that cloud-phase conversions cause a robust negative feedback by changing cloud scattering and emissivity, but this mechanism makes a modest contribution to the overall cloud feedback at the global scale.

Climate change↗

Experimental Comparison of two Active Vibration Control Approaches: Velocity Feedback and Negative Capacitance Shunt Damping

This paper outlines a direct, experimental comparison between two established active vibration control techniques. Active vibration control methods, many of which rely upon piezoelectric patches as actuators and/or sensors, have been widely studied, showing many advantages over passive techniques. However, few direct comparisons between different active vibration control methods have been made to determine the performance benefit of one method over another. For the comparison here, the first control method, velocity feedback, is implemented using four accelerometers that act as sensors along with an analog control circuit which drives a piezoelectric actuator. The second method, negative capacitance shunt damping, consists of a basic analog circuit which utilizes a single piezoelectric patch as both a sensor and actuator. Both of these control methods are implemented individually using the same piezoelectric actuator attached to a clamped Plexiglas window. To assess the performance of each control method, the spatially averaged velocity of the window is compared to an uncontrolled response.

Beck, Benjamin↗

Power semiconductor device with negative thermal feedback

Composite power semiconductor avoids second breakdown and provides stable operation. It consists of an array of parallel-connected integrated circuits fabricated in a single chip. The output power device and associated low-level amplifier are closely coupled thermally, so that they have a predetermined temperature relationship.

Borky, J. M.↗

A Theory for the Balance between Warm Rain and Ice Crystal Processes of Precipitation in Mixed-Phase Clouds

Abstract Mixed-phase clouds contain both supercooled cloud liquid and ice crystals. In principle, precipitation may be initiated either by the liquid phase or by the ice phase. Ice crystals may grow by vapor diffusion to become snow (“ice crystal process”), forming “cold” precipitation. Equally, cloud droplets, when large enough, coalesce to form “warm” precipitation by the “warm rain process.” Warm rain could be supercooled and freeze as “warm” graupel. In the present paper, a new simplified theoretical analysis is provided to examine the microphysical system consisting of three species of hydrometeor, namely, cloud liquid, “cold ice” (crystals, snow), and “warm rain” (frozen or supercooled). This is obtained by nondimensionalizing and simplifying the evolution equations for the mass of each species. Analytical formulas are given for equilibria. Feedback analysis shows that the sign of the feedback is linked to the abundance of precipitation, with a neutral surface in the 3D phase space. The system’s precipitation amount explodes while in the initial unstable regime, crossing the neutral surface and approaching the equilibrium point that is a stable attractor. Positive and negative feedbacks are elucidated. In a standard case, the cold ice mass is about 1000 times larger than the warm rain mass. To illustrate the physical behavior of the theory, sensitivity tests are performed with respect to environmental conditions (e.g., aerosol, updraft speed) and microphysical parameters (e.g., riming and sedimentation rates for cold ice). Cold ice prevails, especially in fast ascent, due to its low bulk density, favoring slow sedimentation and a wide cross-sectional area for riming. Significance Statement The theory elucidates how the ice phase can prevail in the precipitation from any mixed-phase clouds with supercooled cloud liquid and crystals. The ice phase radically suppresses cloud liquid by riming when active and “wins” the competition against coalescence. This prevalence of ice is shown to arise from the low bulk density of snow. The cloud is viewed as a system of negative and positive feedbacks that prevail in realms of stability and instability in a 3D phase space.

Meteorology & Atmospheric Sciences↗

Logarithmic circuit with wide dynamic range

A circuit deriving an output voltage that is proportional to the logarithm of a dc input voltage susceptible to wide variations in amplitude includes a constant current source which forward biases a diode so that the diode operates in the exponential portion of its voltage versus current characteristic, above its saturation current. The constant current source includes first and second, cascaded feedback, dc operational amplifiers connected in negative feedback circuit. An input terminal of the first amplifier is responsive to the input voltage. A circuit shunting the first amplifier output terminal includes a resistor in series with the diode. The voltage across the resistor is sensed at the input of the second dc operational feedback amplifier. The current flowing through the resistor is proportional to the input voltage over the wide range of variations in amplitude of the input voltage.

Wiley, P. H.↗

Global Radiative Flux Profile Dataset: Revised and Extended

The third generation of the radiative flux profile data product, called ISCCP-FH, is described. The revisions over the previous generation (called ISCCP-FD) include improvements in the radiative model representation of gaseous and aerosol effects, as well as a refined statistical model of cloud vertical layer variations with cloud types, and increased spatial resolution. The new product benefits from the changes in the new H-version of the ISCCP cloud products (called ISCCP-H): higher spatial resolution, revised radiance calibration and treatment of ice clouds, treatment of aerosol effects, and revision of all the ancillary atmosphere and surface property products. The ISCCP-FH product is evaluated against more direct measurements from the Clouds and the Earth’s Radiant Energy System and the Baseline Surface Radiation Network products, showing some small, overall reductions in average flux uncertainties; but the main results are similar to ISCCP-FD: the ISCCP-FH uncertainties remain ≲10 Wm −2 at the top-of-atmosphere (TOA) and ≲15 Wm −2 at surface for monthly, regional averages. The long-term variations of TOA, surface and in-atmosphere net fluxes are documented and the possible transient cloud feedback implications of a long-term change of clouds are investigated. The cloud and flux variations from 1998 to 2012 suggest a positive cloud-radiative feedback on the oceanic circulation and a negative feedback on the atmospheric circulation. This example demonstrates that the ISCCP-FH product can provide useful diagnostic information about weather-to-interannual scale variations of radiation induced by changes in cloudiness as well as atmospheric and surface properties.

ISCCP-FH↗

Structure of WNT inhibitor adenomatosis polyposis coli down-regulated 1 (APCDD1), a cell-surface lipid-binding protein

Diverse extracellular proteins negatively regulate WNT signaling. One such regulator is adenomatosis polyposis coli down-regulated 1 (APCDD1), a conserved single-span transmembrane protein. In response to WNT signaling in a variety of tissues, APCDD1 transcripts are highly up-regulated. We have determined the three-dimensional structure of the extracellular domain of APCDD1, and this structure reveals an unusual architecture consisting of two closely apposed β-barrel domains (ABD1 and ABD2). ABD2, but not ABD1, has a large hydrophobic pocket that accommodates a bound lipid. The APCDD1 ECD can also bind to WNT7A, presumably via its covalently bound palmitoleate, a modification that is common to all WNTs and is essential for signaling. This work suggests that APCDD1 functions as a negative feedback regulator by titrating WNT ligands at the surface of responding cells.

59 BASIC BIOLOGICAL SCIENCES↗

Feedback loop compensates for rectifier nonlinearity

Signal processing circuit with two negative feedback loops rectifies two sinusoidal signals which are 180 degrees out of phase and produces a single full-wave rectified output signal. Each feedback loop incorporates a feedback rectifier to compensate for the nonlinearity of the circuit.

Source record↗