H5bench: a benchmark suite for parallel HDF5 (H5bench) v0.6
H5bench benchmark suite contains a list of applications that are used to measure the HDF5 I/O performance from various aspects.
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H5bench benchmark suite contains a list of applications that are used to measure the HDF5 I/O performance from various aspects.
For several years now, Fermilab has been investigating the use of HDF5 for large-scale analysis of experimental high energy physics (HEP) data.
This paper describes an approach to interrogating the fission matrix available in the HDF5-formatted restart file (also known as the “runtape” file), which is produced by the upcoming public release of the MCNP R code, version 6.3. The fission matrix, its eigenvalues, and its eigenvectors, are important tools for characterizing fissile systems such as research and power reactors and for accelerating the convergence of the Monte Carlo fission-source site distribution.
This report describes the verification performed to ensure that a new HDF5-based MCNP® unstructured mesh (UM) [1] file correctly represents elemental values on the associated mesh geometry.
A Python tool for converting the MCNP6 HDF5 PTRAC file to a list of Python trees is presented. The particle trees store MCNP6 simulated events for each history using parent-child relationships, which ensures that branching processes are accurately reproduced. A variety of post-processing scripts are presented and used in conjunction with the Python particle trees to make special tallies that are currently not available in the MCNP6 software and visualize the particle tracks.
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NASA’s Earth Observing System Data and Information System (EOSDIS) contains thousands of Earth science datasets from satellites, models, and field campaigns. EOSDIS data are stored in formats that are well supported by the Earth Science community. These formats include the Hierarchical Data Format (HDF), with derivative flavors such as HDF-5 and the Network Common Data Format (NetCDF-4). The HDF specification allows for a directory-like hierarchy within a single file, known as "groups". Observational data and associated metadata within a single file can be distributed amongst multiple internal groups, which can also be nested to multiple levels. Working with datasets that have a group hierarchical structure can be difficult because of the nested structure of groups. Widely used packages, such as xarray, have data models that do not accommodate the hierarchical structure within HDF files, requiring users to traverse the file and open different HDF groups as separate, unrelated objects. Xarray-datatree is a Python package developed to solve the difficulty of traversing HDFs with a hierarchical group structure by creating a tree-like hierarchical data structure in xarray. The tree-like structure allows each group to be accessed once a DataTree object is instantiated. The migration of xarray-datatree into the xarray core library will reduce barriers to accessing Earth science data by eliminating the need to understand and traverse the specific hierarchy of a grouped HDF file.
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