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GeneLab Phase 2: Integrated Search Data Federation of Space Biology Experimental Data

The GeneLab project is a science initiative to maximize the scientific return of omics data collected from spaceflight and from ground simulations of microgravity and radiation experiments, supported by a data system for a public bioinformatics repository and collaborative analysis tools for these data. The mission of GeneLab is to maximize the utilization of the valuable biological research resources aboard the ISS by collecting genomic, transcriptomic, proteomic and metabolomic (so-called omics) data to enable the exploration of the molecular network responses of terrestrial biology to space environments using a systems biology approach. All GeneLab data are made available to a worldwide network of researchers through its open-access data system. GeneLab is currently being developed by NASA to support Open Science biomedical research in order to enable the human exploration of space and improve life on earth. Open access to Phase 1 of the GeneLab Data Systems (GLDS) was implemented in April 2015. Download volumes have grown steadily, mirroring the growth in curated space biology research data sets (61 as of June 2016), now exceeding 10 TB/month, with over 10,000 file downloads since the start of Phase 1. For the period April 2015 to May 2016, most frequently downloaded were data from studies of Mus musculus (39) followed closely by Arabidopsis thaliana (30), with the remaining downloads roughly equally split across 12 other organisms (each 10 of total downloads). GLDS Phase 2 is focusing on interoperability, supporting data federation, including integrated search capabilities, of GLDS-housed data sets with external data sources, such as gene expression data from NIHNCBIs Gene Expression Omnibus (GEO), proteomic data from EBIs PRIDE system, and metagenomic data from Argonne National Laboratory's MG-RAST. GEO and MG-RAST employ specifications for investigation metadata that are different from those used by the GLDS and PRIDE (e.g., ISA-Tab). The GLDS Phase 2 system will implement a Google-like, full-text search engine using a Service-Oriented Architecture by utilizing publicly available RESTful web services Application Programming Interfaces (e.g., GEO Entrez Programming Utilities) and a Common Metadata Model (CMM) in order to accommodate the different metadata formats between the heterogeneous bioinformatics databases. GLDS Phase 2 completion with fully implemented capabilities will be made available to the general public in September 2017.

Space Biology↗

Comparison of GLIMPS and HFAST Stirling engine code predictions with experimental data

Predictions from GLIMPS and HFAST design codes are compared with experimental data for the RE-1000 and SPRE free piston Stirling engines. Engine performance and available power loss predictions are compared. Differences exist between GLIMPS and HFAST loss predictions. Both codes require engine specific calibration to bring predictions and experimental data into agreement.

Geng, Steven M.↗

Comparison of GLIMPS and HFAST Stirling engine code predictions with experimental data

Predictions from GLIMPS and HFAST design codes are compared with experimental data for the RE-1000 and SPRE free piston Stirling engines. Engine performance and available power loss predictions are compared. Differences exist between GLIMPS and HFAST loss predictions. Both codes require engine specific calibration to bring predictions and experimental data into agreement.

Geng, Steven M.↗

Vibration and loads in hingeless rotors. Volume 2: Experimental data

Descriptions, geometry, and technical data covering three rotor systems are presented. Tables of experimental data gathered during wind tunnel testing of two of the systems are included. Both analyzed experimental data, ready for comparison with theory, and the basic reduced data from which they were obtained are reported.

Watts, G. A.↗

Comparison of Experimental Data and Computations Fluid Dynamics Analysis for a Three Dimensional Linear Plug Nozzle

A three dimensional linear plug nozzle of area ratio 12.79 was designed by Astrium. The nozzle was tested within the German National Technology Program LION in a cold air wind tunnel by TU Dresden. The experimental hardware and test conditions are described. Experimental data was obtained for the nozzle without plug side wall fences and then with plug side wall fences. Experimental data for two nozzle pressure ratios (NPR), 116 and 45, are presented for the without fence and with fence configurations. Schlieren images of both NPR were recorded. Axial profiles of plug wall static pressures were measured at several spanwise locations and on the plug base. Detailed computational fluid dynamics (CFD) analysis was performed for these nozzle configurations by NASA MSFC. The CFD exhibits good agreement with the experimental data. A detailed comparison of the CFD results and the experimental plug wall pressure data is given for four test conditions; at both NPRs, without and with plug side wall fences. Numerical schlieren images are compared to experimental schlieren images. Nozzle thrust efficiencies are calculated from the CFD results. The CFD results are used to illustrate the plug nozzle fluid dynamics for all four test conditions. The effect of the plug side wall fences at both NPRs is emphasized.

Ruf, J. H.↗

Comparison of secondary flows predicted by a viscous code and an inviscid code with experimental data for a turning duct

A comparison of the secondary flows computed by the viscous Kreskovsky-Briley-McDonald code and the inviscid Denton code with benchmark experimental data for turning duct is presented. The viscous code is a fully parabolized space-marching Navier-Stokes solver while the inviscid code is a time-marching Euler solver. The experimental data were collected by Taylor, Whitelaw, and Yianneskis with a laser Doppler velocimeter system in a 90 deg turning duct of square cross-section. The agreement between the viscous and inviscid computations was generally very good for the streamwise primary velocity and the radial secondary velocity, except at the walls, where slip conditions were specified for the inviscid code. The agreement between both the computations and the experimental data was not as close, especially at the 60.0 deg and 77.5 deg angular positions within the duct. This disagreement was attributed to incomplete modelling of the vortex development near the suction surface.

Schwab, J. R.↗

Comparison of secondary flows predicted by a viscous code and an inviscid code with experimental data for a turning duct

A comparison of the secondary flows computed by the viscous Kreskovsky-Briley-McDonald code and the inviscid Denton code with benchmark experimental data for turning duct is presented. The viscous code is a fully parabolized space-marching Navier-Stokes solver while the inviscid code is a time-marching Euler solver. The experimental data were collected by Taylor, Whitelaw, and Yianneskis with a laser Doppler velocimeter system in a 90 deg turning duct of square cross-section. The agreement between the viscous and inviscid computations was generally very good for the streamwise primary velocity and the radial secondary velocity, except at the walls, where slip conditions were specified for the inviscid code. The agreement between both the computations and the experimental data was not as close, especially at the 60.0 deg and 77.5 deg angular positions within the duct. This disagreement was attributed to incomplete modeling of the vortex development near the suction surface.

Schwab, J. R.↗

Optimization of Regression Models of Experimental Data Using Confirmation Points

A new search metric is discussed that may be used to better assess the predictive capability of different math term combinations during the optimization of a regression model of experimental data. The new search metric can be determined for each tested math term combination if the given experimental data set is split into two subsets. The first subset consists of data points that are only used to determine the coefficients of the regression model. The second subset consists of confirmation points that are exclusively used to test the regression model. The new search metric value is assigned after comparing two values that describe the quality of the fit of each subset. The first value is the standard deviation of the PRESS residuals of the data points. The second value is the standard deviation of the response residuals of the confirmation points. The greater of the two values is used as the new search metric value. This choice guarantees that both standard deviations are always less or equal to the value that is used during the optimization. Experimental data from the calibration of a wind tunnel strain-gage balance is used to illustrate the application of the new search metric. The new search metric ultimately generates an optimized regression model that was already tested at regression model independent confirmation points before it is ever used to predict an unknown response from a set of regressors.

Ulbrich, N.↗

Comparison of interference-free numerical results with sample experimental data for the AEDC wall-interference model at transonic and subsonic flow conditions

Numerical results obtained from two computer programs recently developed with NASA support and now available for use by others are compared with some sample experimental data taken on a rectangular-wing configuration in the AEDC 16-Foot Transonic Tunnel at transonic and subsonic flow conditions. This data was used in an AEDC investigation as reference data to deduce the tunnel-wall interference effects for corresponding data taken in a smaller tunnel. The comparisons were originally intended to see how well a current state-of-the-art transonic flow calculation for a simple 3-D wing agreed with data which was felt by experimentalists to be relatively interference-free. As a result of the discrepancies between the experimental data and computational results at the quoted angle of attack, it was then deduced from an approximate stress analysis that the sting had deflected appreciably. Thus, the comparisons themselves are not so meaningful, since the calculations must be repeated at the proper angle of attack. Of more importance, however, is a demonstration of the utility of currently available computational tools in the analysis and correlation of transonic experimental data.

Newman, P. A.↗

Derivation of multi-dimensional ellipsoidal convex model for experimental data

This paper deals with determination of the best ellipsoidal model fitting the available limited experimental data. The problem is defined as that of finding the minimum volume ellipsoid containing all experimental data. A general transformation matrix for the rotation of N-dimensional coordinate system is first obtained by the Gramm-Schmidt orthogonalization procedure. The use of this matrix makes it possible to search in all possible directions to find an ellipsoid with a minimum volume. The general procedure is illustrated by examples in which the real data is utilized. An invariance property of the response with uncertain parameters of different physical nature is also discussed.

Zhu, L. P.↗

Comparison between computations and experimental data in unsteady three-dimensional transonic aerodynamics, including aeroelastic applications

Comparisons were made of computed and experimental data in three-dimensional unsteady transonic aerodynamics, including aeroelastic applications. The computer code LTRAN3, which is based on small-disturbance aerodynamic theory, was used to obtain the aerodynamic data. A procedure based on the U-g method was developed to compute flutter boundaries by using the unsteady aerodynamic coefficients obtained from LTRAN3. The experimental data were obtained from available NASA publications. All the studies were conducted for thin, unswept, rectangular wings with circular-arc cross sections. Numerical and experimental steady and unsteady aerodynamic data were compared for a wing with an aspect ratio of 3 and a thickness ratio of 5% at Mach numbers of 0.7 and 0.9. Flutter data were compared for a wing with an aspect ratio of 5. Two thickness ratios, 6% at Mach numbers of 0.715, 0.851, and 0.913, and 4% at Mach number of 0.904, were considered. Based on the unsteady aerodynamic data obtained from LTRAN3, flutter boundaries were computed; they were compared with those obtained from experiments and the code NASTRAN, which uses linear aerodynamics.

Guruswamy, P.↗

REGAL International Program: Analysis of experimental data for depletion code validation

The Rod-Extremity and Gadolinia AnaLysis (REGAL) Program is a joint international effort to expand the nuclide inventory experimental data for irradiated nuclear fuel, with a specific focus on addressing two challenging needs associated with the characterization of modern, high duty, nuclear fuel. The first challenge is filling the gaps in experimental nuclide inventory data for gadolinia (UO 2 –Gd 2 O 3 ) fuel rods. The huge absorption cross sections of Gd-155 and Gd-157 in the Gd dopant in these rods lead to atypical spatial self-shielding patterns and have an impact on the neutronic environment within the fuel assembly compared to regular UO 2 fuel rods. Additionally, the second challenge is investigating the impact of burnup gradients at rod extremities on fuel composition and neutron leakage, to provide relevant experimental data for assessing computational capabilities to model such impact. A benchmark has been defined as a first step in the development of best-estimate models in the preliminary phase of the experimental data evaluation. Comparison of experimental results obtained in Phase I of the program for two measured pressurized water reactor (PWR) samples, one UO 2 and one UO 2 –Gd 2 O 3 sample, with calculated results obtained with different computational tools based on the defined benchmark are presented and discussed.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

A class of nonideal solutions. 2: Application to experimental data

Functions for the representation of the thermodynamic properties of nonideal solutions were applied to the experimental data for several highly nonideal solutions. The test solutions were selected to cover both electrolyte behavior. The results imply that the functions are fully capable of representing the experimental data within their accuracy over the whole composition range and demonstrate that many nonideal solutions can be regarded as members of the defined class of nonideal solutions.

Zeleznik, F. J.↗

Comparing Spray Characteristics from Reynolds Averaged Navier-Stokes (RANS) National Combustion Code (NCC) Calculations Against Experimental Data for a Turbulent Reacting Flow

Developing physics-based tools to aid in reducing harmful combustion emissions, like Nitrogen Oxides (NOx), Carbon Monoxide (CO), Unburnt Hydrocarbons (UHC s), and Sulfur Dioxides (SOx), is an important goal of aeronautics research at NASA. As part of that effort, NASA Glenn Research Center is performing a detailed assessment and validation of an in-house combustion CFD code known as the National Combustion Code (NCC) for turbulent reacting flows. To assess the current capabilities of NCC for simulating turbulent reacting flows with liquid jet fuel injection, a set of Single Swirler Lean Direct Injection (LDI) experiments performed at the University of Cincinnati was chosen as an initial validation data set. This Jet-A/air combustion experiment operates at a lean equivalence ratio of 0.75 at atmospheric pressure and has a 4 percent static pressure drop across the swirler. Detailed comparisons of NCC predictions for gas temperature and gaseous emissions (CO and NOx) against this experiment are considered in a previous work. The current paper is focused on detailed comparisons of the spray characteristics (radial profiles of drop size distribution and at several radial rakes) from NCC simulations against the experimental data. Comparisons against experimental data show that the use of the correlation for primary spray break-up implemented by Raju in the NCC produces most realistic results, but this result needs to be improved. Given the single or ten step chemical kinetics models, use of a spray size correlation gives similar, acceptable results

Iannetti, Anthony C.↗

Experimental data from an oxygen plant for Mars

Experimental data are presented on various aspects of the plant operation intended to produce oxygen from the atmospheric carbon dioxide at any Martian site. A solid electrolytic cell is used in the tubular geometry. Anaerobic carbon dioxide is procured from a gas vendor and is used at a pressure of 1 bar (entrance to the plant). The variables include the voltage applied to the cell, the temperature of the cell, the current density, the flow rate and the duty-cycle. The oxygen production rates have been consistent with the specifications of the cell manufacturer. It is projected that a plant weighing between 145 and 197 kg can be built to produce 10 kg of oxygen per day. Various operational characteristics such as cell poisoning, carbon formation, nitrogen embrittlement, local current densities exceeding the breakdown potential for the cell material, reliability, risk, are all being quantitatively assessed.

Schallhorn, P. A.↗

Code validation of SAM using natural-circulation experimental data from the compact integral effects test (CIET) facility

The primary objective of this study is to validate the system analysis code, SAM, using experimental data from the Compact Integral Effects Test (CIET) experimental loop. SAM is a modern system analysis code being developed at Argonne National Laboratory for safety analysis of designs for advanced non-light water reactors (non-LWRs), such as sodium-cooled fast reactors, high-temperature gas-cooled reactors, and fluoride salt-cooled high-temperature reactors (FHRs). To support SAM code development for the wide range of non-LWR applications, it is of paramount importance to validate the code against experiments highly relevant to these reactor concepts. Additionally, the CIET facility, which was designed to reproduce the thermal-hydraulics response of FHRs under both forced- and natural-circulation conditions, has been identified and selected as one of the benchmark test facilities for SAM code validation. In this study, two sets of available CIET tests were selected for SAM code validation purposes, namely, power step change transient tests and steady-state natural-circulation tests. For all selected tests, SAM-predicted results show very good agreement with experimental data. The successful validation of SAM against these selected CIET experiments demonstrates that the computer code is well suited for thermal-hydraulics analysis of FHR designs.

42 ENGINEERING↗

Analysis of Multivariate Experimental Data Using A Simplified Regression Model Search Algorithm

A new regression model search algorithm was developed in 2011 that may be used to analyze both general multivariate experimental data sets and wind tunnel strain-gage balance calibration data. The new algorithm is a simplified version of a more complex search algorithm that was originally developed at the NASA Ames Balance Calibration Laboratory. The new algorithm has the advantage that it needs only about one tenth of the original algorithm's CPU time for the completion of a search. In addition, extensive testing showed that the prediction accuracy of math models obtained from the simplified algorithm is similar to the prediction accuracy of math models obtained from the original algorithm. The simplified algorithm, however, cannot guarantee that search constraints related to a set of statistical quality requirements are always satisfied in the optimized regression models. Therefore, the simplified search algorithm is not intended to replace the original search algorithm. Instead, it may be used to generate an alternate optimized regression model of experimental data whenever the application of the original search algorithm either fails or requires too much CPU time. Data from a machine calibration of NASA's MK40 force balance is used to illustrate the application of the new regression model search algorithm.

multivariate experimental data↗

Review of Experimental Data for Validating Computer Codes Used in Shielding Calculations for Spent Fuel Storage and Transportation Systems

This report presents a review of available radiochemical assay data and shielding benchmarks applicable to spent nuclear fuel (SNF) shielding calculations. The relevant information reviewed herein includes the Spent Fuel Composition (SFCOMPO) database, the Shielding Integral Benchmark Archive and Database (SINBAD), the International Handbook of Evaluated Criticality Safety Benchmark Experiments, and published measurements of external dose rates of casks loaded with SNF. The relevant experimental data identified in this report may be used to support verification and validation of computer codes used in SNF cask/transport shielding applications, as well as development of calculation uncertainties. It should be noted that a relatively small subset of the identified experimental data (e.g., criticality alarm experiments) is available in a standard format established by the international community participating in experimental isotopic and shielding data evaluations. An effort of the SFCOMPO Technical Review Group (TRG) is underway to publish first isotopic evaluations of individual assay data using a standard data evaluation format. The SINBAD TRG has recently initiated benchmark evaluations and modernization of the database. Therefore, more relevant information is expected in the future that will enable users to select quality experimental data in depletion code and shielding code validations for SNF applications.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗