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Data Reduction Pipeline for the CHARIS Integral-Field Spectrograph I: Detector Readout Calibration and Data Cube Extraction

We present the data reduction pipeline for CHARIS, a high-contrast integral-field spectrograph for the Subaru Telescope. The pipeline constructs a ramp from the raw reads using the measured nonlinear pixel response and reconstructs the data cube using one of three extraction algorithms: aperture photometry, optimal extraction, or chi-squared fitting. We measure and apply both a detector flatfield and a lenslet flatfield and reconstruct the wavelength- and position-dependent lenslet point-spread function (PSF) from images taken with a tunable laser. We use these measured PSFs to implement a chi-squared-based extraction of the data cube, with typical residuals of approximately 5 percent due to imperfect models of the under-sampled lenslet PSFs. The full two-dimensional residual of the chi-squared extraction allows us to model and remove correlated read noise, dramatically improving CHARIS's performance. The chi-squared extraction produces a data cube that has been deconvolved with the line-spread function and never performs any interpolations of either the data or the individual lenslet spectra. The extracted data cube also includes uncertainties for each spatial and spectral measurement. CHARIS's software is parallelized, written in Python and Cython, and freely available on github with a separate documentation page. Astrometric and spectrophotometric calibrations of the data cubes and PSF subtraction will be treated in a forthcoming paper.

Brandt, Timothy D.

Atmospheric correction of NS-001 data and extraction of multiple angle reflectance data sets

The percentage of incident solar flux reflected by a surface is a quantity of considerable interest in remote sensing studies. To calculate reflectance from remotely sensed radiance data some estimate of incident flux is needed. Since simultaneous ground-based radiometric measurements are often not available for observations by aircraft or satellite sensors, a procedure based on modeling atmospheric transmittance and scattering was developed. The primary application is to an aircraft data set collected with the NASA C-130 over the Superior National Forest, Minnesota. Atmospherically corrected multiple angle reflectance data sets and reflectance images are generated for areas of natural forest vegetation. These data and the technique may be useful for studies of the interactions of light with forested canopies.

Strebel, D. E.

Software for Improved Extraction of Data From Tape Storage

A computer program has been written to replace the original software of Racal Storeplex Delta tape recorders, which are used at Stennis Space Center. The original software could be activated by a command- line interface only; the present software offers the option of a command-line or graphical user interface. The present software also offers the option of batch-file operation (activation by a file that contains command lines for operations performed consecutively). The present software is also more reliable than was the original software: The original software was plagued by several deficiencies that made it difficult to execute, modify, and test. In addition, when using the original software to extract data that had been recorded within specified intervals of time, the resolution with which one could control starting and stopping times was no finer than about a second (or, in some cases, several seconds). In contrast, the present software is capable of controlling playback times to within 1/100 second of times specified by the user, assuming that the tape-recorder clock is accurate to within 1/100 second.

Cheng, Chiu-Fu

Software for Improved Extraction of Data From Tape Storage

A computer program has been written to replace the original software of Racal Storeplex Delta tape recorders, which are still used at Stennis Space Center but have been discontinued by the manufacturer. Whereas the original software could be activated by a command-line interface only, the present software offers the option of a command-line or graphical user interface. The present software also offers the option of batch-file operation (activation by a file that contains command lines for operations performed consecutively). The present software is also more reliable than was the original software: The original software was plagued by several deficiencies that made it difficult to execute, modify, and test. In addition, when using the original software to extract data that had been recorded within specified intervals of time, the resolution with which one could control starting and stopping times was no finer than about a second (or, in some cases, several seconds). In contrast, the present software is capable of controlling playback times to within 1/100 second of times specified by the user, assuming that the tape-recorder clock is accurate to within 1/100 second.

Cheng, Chiu-Fu

Software for Improved Extraction of Data From Tape Storage

A computer program has been written to replace the original software of Racal Storeplex Delta tape recorders, which are still used at Stennis Space Center but have been discontinued by the manufacturer. Whereas the original software could be activated by a command-line interface only, the present software offers the option of a command-line or graphical user interface. The present software also offers the option of batch-file operation (activation by a file that contains command lines for operations performed consecutively). The present software is also more reliable than was the original software: The original software was plagued by several deficiencies that made it difficult to execute, modify, and test. In addition, when using the original software to extract data that had been recorded within specified intervals of time, the resolution with which one could control starting and stopping times was no finer than about a second (or, in some cases, several seconds). In contrast, the present software is capable of controlling playback times to within 1/100 second of times specified by the user, assuming that the tape-recorder clock is accurate to within 1/100 second.

Cheng, Chiu-Fu

Study of a wideband probe

The design of an experiment to measure communication characteristics of wideband satellite-to-ground links is reported. Of special concern are the effects of rainstorms and atmospheric turbulence on path attenuation and phase fluctuation. Multi-tone and pulse probing are considered. A multi-tone technique which is a modification of ATS-5 and ATS-F hardware is recommended. Data extraction and data processing techniques and key hardware requirements for the experiment are reviewed.

Alexander, P., Jr.

Extraction and Analysis of Display Data

The Display Audit Suite is an integrated package of software tools that partly automates the detection of Portable Computer System (PCS) Display errors. [PCS is a lap top computer used onboard the International Space Station (ISS).] The need for automation stems from the large quantity of PCS displays (6,000+, with 1,000,000+ lines of command and telemetry data). The Display Audit Suite includes data-extraction tools, automatic error detection tools, and database tools for generating analysis spread sheets. These spread sheets allow engineers to more easily identify many different kinds of possible errors. The Suite supports over 40 independent analyses, 16 NASA Tech Briefs, November 2008 and complements formal testing by being comprehensive (all displays can be checked) and by revealing errors that are difficult to detect via test. In addition, the Suite can be run early in the development cycle to find and correct errors in advance of testing.

Land, Chris

Pulsed holography for combustion diagnostics

Image reconstruction and data extraction techniques were considered with respect to their application to combustion diagnostics. A system was designed and constructed that possesses sufficient stability and resolution to make quantitative data extraction possible. Example data were manually processed using the system to demonstrate its feasibility for the purpose intended. The system was interfaced with the PDP-11-04 computer for maximum design capability. It was concluded that the use of specialized digital hardware controlled by a relatively small computer provides the best combination of accuracy, speed, and versatility for this particular problem area.

Klein, N.

Digital Signal Conditioning for Flight Test Instrumentation

This volume in the AGARD Flight Instrumentation Series provides flight test instrumentation engineers with an introduction to digital measurement processes on aircraft. Flight test instrumentation systems are rapidly evolving from analog-intensive to digital-intensive systems, including the use of onboard digital computers. Topics include measurements that are digital in origin, as well as sampling, encoding, transmitting, and storing of data. Particular emphasis is placed on modern avionic data bus architectures and what to be aware of when extracting data from them. Examples of data extraction techniques are given. Tradeoffs between digital logic families, trends in digital development, and design testing techniques are discussed. An introduction to digital filtering is also covered.

Data acquisition

Digital Signal Conditioning for Flight Test, Volume 19 [Le Traitement du Signal Numérique pour les Essais en Vol]

This volume in the AGARD Flight Instrumentation Series provides flight test instrumentation engineers with an introduction to digital processes on aircraft. Flight test instrumentation systems are rapidly evolving from analog intensive to digital intensive systems, including the use of onboard digital computers. Topics include: measurements that are digital in origin, sampling, encoding, transmitting, and storing of data. Particular emphasis is placed on modem avionic data bus architectures and what to be aware of when extracting data from them. Some example data extraction techniques are given. Tradeoffs between digital logic families, trends in digital development, and design testing techniques are discussed. An introduction to digital filtering is also covered.

Flight instruments

Classification of multispectral image data by extraction and classification of homogeneous objects

A method of classification of digitized multispectral image data is described. It is designed to exploit a particular type of dependence between adjacent states of nature that is characteristic of the data. The advantages of this, as opposed to the conventional per point approach, are greater accuracy and efficiency, and the results are in a more desirable form for most purposes. Experimental results from both aircraft and satellite data are included.

Kettig, R. L.

Classification of multispectral image data by extraction and classification of homogeneous objects

A classification method for digitized multispectral-image data is described. This method is designed to exploit a particular type of dependence between adjacent states of nature that is characteristic of the data. The advantages of this, as opposed to the conventional 'per point' approach, are greater accuracy and efficiency, and the results are in a more desirable form for most purposes. Experimental results from both aircraft and satellite data are included.

Kettig, R. L.

Quantitative Estimation of Some Possible Errors Associated With TRMM GV Monthly Rain Maps and a Scheme for Spatial Averaging of Radar Accumulations

The Tropical Rainfall Measuring Mission (TRMM) Ground Validation (GV) rain products are generated from ground-based radar observations using a bulk adjusted FACE radar reflectivity (Ze) - rain rate (R) relationship. Monthly Ze-R relationships are obtained by extracting the Ze data with a horizontal resolution of 2 km from an altitude of 1.5 km (from Constant Altitude PPIS, CAPPIS) over the locations of the gauges. The gauge and radar data are merged, and a quality control procedure is applied that eliminates poorly correlated gauge-radar data. Bulk adjusted Ze-R relations are then derived from this quality-controlled merged data base. These Z-R relations are applied to the base scan reflectivity to produce rain maps. The present study examines the effect of these different planes on the total accumulations from the radar and the associated effect on the bulk adjustment coefficient. In order to evaluate the credibility of these GV products, the effect of the different planes involved in the bulk adjustment method will be discussed, The gauge data will also be used to assess the impact of missing radar data (i.e., data gaps) upon the monthly radar-derived rainfall estimates. Experiments were also performed varying both the area of the radar data extracted over the gauges and the use of different weighting coefficients. Preliminary results from these sensitivity tests indicate improved agreement and consistency between the gauge and radar data.

Datta, Saswati

Preliminary efforts toward development of data handling and analysis software for unsteady flow measurements: An application for aeroelastic transonic flow configurations

A few years ago the Structural Dynamics Division at LaRC started ambitious experimental research efforts known as the Benchmark Models Program. The primary objective of this program was to provide experimental data that may serve as a calibration source for computational fluid dynamics (CFD) efforts that deal with aeroelastic unsteady flow configurations. It also focuses on the understanding of complex flow phenomenon associated with unsteady flow developments. The overall plan for the program has been described by Bennett, including a presentation of initial test results of flutter of a rigid wing mounted on flexible supports. An example of a test model employed to measure the dynamic response along with corresponding pressure distributions is shown. This model incorporates eighty pressure transducers distributed along two spanwise stations. In addition, the models are equipped with four accelerometers and two strain gages. The data handling system for the Benchmark Model Program is under development. Several interactive computer routines designed for the user interface, dynamic memory allocation, unsteady flow measurements data extraction, and further data processing were developed. To present a few examples of measured data, the unsteady pressure distributions and the wing model dynamic response were plotted.

Finaish, Fathi

Computer classification of remotely sensed multispectral image data by extraction and classification of homogeneous objects

A method of classification of digitized multispectral images is developed and experimentally evaluated on actual earth resources data collected by aircraft and satellite. The method is designed to exploit the characteristic dependence between adjacent states of nature that is neglected by the more conventional simple-symmetric decision rule. Thus contextual information is incorporated into the classification scheme. The principle reason for doing this is to improve the accuracy of the classification. For general types of dependence this would generally require more computation per resolution element than the simple-symmetric classifier. But when the dependence occurs in the form of redundance, the elements can be classified collectively, in groups, therby reducing the number of classifications required.

Kettig, R. L.

Sensor needs for agricultural applications

The peculiarities of agricultural remotely sensed data requirements evoke special sensor requirements. Vegetative species do not possess significantly different spectral signature at given phases of their development cycle. Hence, the key to their discriminability is the phasing of the phenologic cycle of the subject species. Significant improvements in classification can be obtained by consistently employing multi-temporal observations taken at specific times during the year. The present approach to agricultural data processing results in extracted data equal to approximately .05% of the acquired data. This paper discusses the derivation of agricultural peculiar requirements and the benefits to the end-to-end processing system by judicial utilization and placement of key editing functions such as sample segment extraction, cloudy image removal, sample registration and the elimination of redundant data.

Golden, H.

Scraping Unstructured Data to Explore the Relationship between Rainfall Anomalies and Vector-Borne Disease Outbreaks

According to the World Health Organization (WHO), vector-borne diseases such as malaria and dengue account for 17% of all infectious disease cases and lead to more than 700,000 deaths per year. Tracking and predicting the spread of vector-borne diseases is a vital task that could save hundreds of thousands of lives annually. Oftentimes, the first reports of vector-borne disease outbreaks occur through emails and online reporting systems long before they are officially documented. Tracking and predicting the emergence and spread of vector-borne disease outbreaks requires extracting data from these unstructured sources in combination with historical weather and climate data to understand the underlying background triggers and disease dynamics. In this work, we develop a data extraction pipeline for the online outbreak reporting website ProMED-mail that utilizes a web scraper, transformer neural network summarizer, and named entity recognizer to obtain a dataset of malaria, dengue, zika, and chikungunya outbreaks over the last 30 years. This scraped dataset was further analyzed in association with global rainfall anomalies derived from NASA’s Integrated Multi-satellitE Retrievals for GPM [Global Precipitation Mission] (IMERG) dataset. This preliminary analysis was to understand the effect of global rainfall patterns on the spread of vector-borne diseases. Analysis of the ProMED-mail and GPM data shows that vector-borne disease outbreaks are clustered towards the tropics and outbreaks are often amplified during the rainy seasons. Our scraped dataset can be a valuable tool in creating comprehensive georeferenced disease records for modeling and predicting future outbreaks.

Web scraping