High-resolution structures of a siderophore-producing cyclization domain from Yersinia pestis offer
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Here, the complex [Au(IPr)(2-oxazolidinone)] (1 = IKa) was prepared from reaction of [Au(IPr)Cl] (2), K 2 CO 3 , and propargyl amine (PPA). Kinetic studies have been performed for acid cleavage of 1 to yield the oxazolidinone product and an [Au(IPr)(X)] adduct. The fastest rates of cleavage were found to occur for the hydrogen chloride salt of PPA (PPA-HCl) and for the CO 2 adduct of PPA, PPA-CO 2 = the carbamic acid (CA). This transformation was studied as a function of [CA], pressure of CO 2 as well as temperature. Detailed computational studies support the formation of a key intermediate and are also in agreement with a rapid carbonylation/decarbonylation reaction. The computed reactions mechanisms for addition of PPA-HCl and CA are also presented as well as the crystal structure of 1.
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The reactions of [Cu2(μ–κ 1:κ 1 -O2N)DPFN][NTf2] (1; DPFN = 2,7-bis(fluoro-di(2-pyridyl)methyl)-1,8-naphthyridine, NTf2 – = N(SO2CF3)2 –) with 1,4-dicyanobenzene and 1,2-dicyanoarenes are discussed. Treatment of 1 with 1,4-dicyanobenzene produces a tetra-Cu(I) terephthalate complex (2) and dinitrogen via a discrete CN triple bond cleavage at each cyano group. However, reactions of 1 with 1,2-dicyanoarenes appear to proceed via a cascade reaction involving two intertwined CN triple bond activations to yield a series of di-Cu(I) phthalimides, [Cu2(μ–N(CO)2(Ar))DPFN][NTf2] (3-(Ar); Ar = 1,2-arylenes C6H4, 3-NO2C6H3, 4-NO2C6H3, 4-PrOC6H3, 3-NC5H3) and dinitrogen. The dicopper phthalimide bonding interaction in these compounds is robust enough to resist protonation by pentafluorophenol and alkylation by methyl triflate or benzyl chloride at the imide nitrogen. This characteristic presents an opportunity for postsynthetic modifications of the phthalimide ligand. Nevertheless, treatment of 3-(C 6 H 4 ) with bistriflimidic acid (HNTf2) results in release of the neutral phthalimide, making the dicopper core available to coordinate other ligands such as nitrite and thus, completing a stoichiometric cycle.
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Despite their intriguing photophysical and photochemical activities, naturally occurring photoenzymes have not yet been repurposed for new-to-nature activities. Here we engineered fatty acid photodecarboxylases (FAPs) to catalyse unnatural photoredox radical C–C bond formation by leveraging strongly oxidizing excited-state flavoquinone cofactor. Through genome mining, rational engineering and directed evolution, we developed a panel of radical photocyclases (RAPs) to facilitate decarboxylative radical cyclisation with excellent chemo-, enantio-, and diastereoselectivities. Our high-throughput experimental workflow allowed for the directed evolution of FAPs. An orthogonal set of RAPs was engineered to access all four possible stereoisomers of stereochemical dyad, affording fully diastereo- and enantiodivergent biotransformations in asymmetric radical biocatalysis. Molecular dynamics simulations show that our evolved RAPs allow near-attack conformations to be easily accessed, enabling chemoselective radical cyclisation. The development of stereoselective RAPs provides unnatural C–C bond forming activities in natural photoenzyme families, which can be used to tame the stereochemistry of free radical-mediated reactions.
Hydrothermal liquefaction (HTL) has emerged as a promising strategy for converting abundant, water-rich organic streams into an energy-dense, sustainable, biocrude. Despite major strides in improving oil yields and process intensification, a key underlying challenge persists in relating the composition of the feedstock to the ultimate fate of nitrogen, which is especially important for biocrude quality. To elucidate how nitrogen partitions into the respective gas, aqueous, oil and solid hydrothermal products, food waste was treated under HTL conditions (15 wt% solids, 575 K reaction temperature, and 1 hour reaction time) and elemental, chromatographic and mass spectroscopy analyses were performed on the products to establish dominant product classes and to close mass, carbon, and nitrogen balances. Liquid products (aqueous and biocrude) were found to contain nearly 60% of the nitrogen, with a majority of the biocrude-phase nitrogen in the form of amides. Ab initio thermodynamic and kinetic simulations on model reactants were used to evaluate potential reaction pathways involving reactive nitrogen intermediates. A subsequent kinetic model was evaluated at reaction temperatures ranging 300–1000 K and for a range of feedstock compositions to identify primary reaction pathways. The Maillard reaction is revealed to be the dominant pathway for converting reactive nitrogen intermediates into observed products, especially those in which nitrogen is present as a heterocyclic aromatic. Subsequent product analysis by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR MS) confirms strong agreement among the experimental data, kinetic model and proposed Maillard pathways.
Stannoles are introduced as a new, spontaneously aromatizing diene for [4 + 2] cycloadditions that can be easily introduced into diverse conjugated systems, facilitating the efficient synthesis of complex PAHs and their π-extension.
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This present invention provides for a genetically modified host cell, or a cell-free reaction system, and related methods and materials for the biocatalytic production of an alkyl lactones from a hydroxy fatty acid, or natural alkyl lactones and esters from sugars using non-natural combinations of enzymes.
Sesquiterpene cyclases (STC) catalyse the cyclization of the C15 molecule farnesyl diphosphate into a vast variety of mono- or polycyclic hydrocarbons and, for a few enzymes, oxygenated structures, with diverse stereogenic centres. The huge diversity in sesquiterpene skeleton structures in nature is primarily the result of the type of cyclization driven by the STC. Despite the phenomenal impact of fungal sesquiterpenes on the ecology of fungi and their potentials for applications, the fungal sesquiterpenome is largely untapped. The identification of fungal STC is generally based on protein sequence similarity with characterized enzymes. This approach has improved our knowledge on STC in a few fungal species, but it has limited success for the discovery of distant sequences. Besides, the tools based on secondary metabolite biosynthesis gene clusters have shown poor performance for terpene cyclases. Here, we used four sets of sequences of fungal STC that catalyse four types of cyclization, and specific amino acid motives to identify phylogenetically related sequences in the genomes of basidiomycetes fungi from the order Polyporales. We validated that four STC genes newly identified from the genome sequence of Leiotrametes menziesii, each classified in a different phylogenetic clade, catalysed a predicted cyclization of farnesyl diphosphate. We built HMM models and searched STC genes in 656 fungal genomes genomes. We identified 5605 STC genes, which were classified in one of the four clades and had a predicted cyclization mechanism. We noticed that the HMM models were more accurate for the prediction of the type of cyclization catalysed by basidiomycete STC than for ascomycete STC.
Selective ethylene oligomerization via oxidative cyclization, forming metallacyclic intermediates, is typically catalyzed by molecular titanium and chromium complexes to produce butenes, hexenes, or octenes, depending on the supporting ligand framework. However, this mechanism requires significant electron density at the metal active site and is not known to be generalizable to other first-row transition metals. In this work, we computationally investigate the electronic modulation of five transition metals (Mn, Fe, Co, Ni, and Cu) supported on titania (TiO₂) through reductive lithium intercalation to promote selective oligomerization via oxidative cyclization, using density functional theory (DFT). Our findings predict that Mn/LiTiO₂ exhibits high catalytic activity due to the exergonic nature of oxidative cyclization with two ethylene molecules. Additionally, lithium titanate (LiTiO₂) supports enhance catalytic performance compared to TiO₂. Experimental validation confirms that Mn/LiTiO₂ achieves higher conversion rates and improved selectivity toward hexene (C₄:C₆ = 1:2.6). The enhanced activity is attributed to lithiation, which alters the electronic environment around Mn active sites. Mechanistic studies reveal that the formation of a seven-membered ring, a key intermediate for hexene formation, is more favorable on LiTiO₂ than TiO₂. This work provides the first evidence of Mn catalyzing selective ethylene oligomerization via oxidative cyclization in either homogeneous or heterogeneous catalysis.