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Impact of Conifer Forest Litter on Microwave Emission at L-Band

This study reports on the utilization of microwave modeling, together with ground truth, and L-band (1.4-GHz) brightness temperatures to investigate the passive microwave characteristics of a conifer forest floor. The microwave data were acquired over a natural Virginia Pine forest in Maryland by a ground-based microwave active/passive instrument system in 2008/2009. Ground measurements of the tree biophysical parameters and forest floor characteristics were obtained during the field campaign. The test site consisted of medium-sized evergreen conifers with an average height of 12 m and average diameters at breast height of 12.6 cm. The site is a typical pine forest site in that there is a surface layer of loose debris/needles and an organic transition layer above the mineral soil. In an effort to characterize and model the impact of the surface litter layer, an experiment was conducted on a day with wet soil conditions, which involved removal of the surface litter layer from one half of the test site while keeping the other half undisturbed. The observations showed detectable decrease in emissivity for both polarizations after the surface litter layer was removed. A first-order radiative transfer model of the forest stands including the multilayer nature of the forest floor in conjunction with the ground truth data are used to compute forest emission. The model calculations reproduced the major features of the experimental data over the entire duration, which included the effects of surface litter and ground moisture content on overall emission. Both theory and experimental results confirm that the litter layer increases the observed canopy brightness temperature and obscure the soil emission.

Kurum, Mehmet

Montane Conifer, Aspen, Meadow, and Sagebrush Metagenome Resolved Genomes and Traits in East River Watershed, Colorado, USA

Climate change is driving vegetation shifts in mountain watersheds, with unknown impacts on biogeochemical cycles. We hypothesize that these shifts will reshape soil microbiomes and associated biogeochemical processes. As a part of Lawrence Berkeley National Laboratory (LBNL) Watershed Science Focus Area (SFA), we assessed microbiome and microbial functional trait differences between soils under conifer, aspen, forby meadows, and sagebrush across the East River Watershed, CO, controlling for elevation and aspect.Here we present metagenome assembled genomes (MAGs) for the bacterial and archaeal communities from soils 0-20cm in depth across three locations in the watershed—Headwaters, Upper Reaches, and Lower Reaches from August 3-11th 2016. Each location was further subdivided into two blocks, with one block on a west facing aspect, and two on the east aspect of the valley. Within blocks, two samples per vegetation type were taken (one at each depth). This resulted in 66 samples, which were sequenced at JGI and can be found under the Joint Genome Institute (JGI) Genomes Online Database (GOLD) sequencing project Gs0118068. Metagenomes were assembled through an inhouse pipeline (see methods), binned using four autobinners (concoct, maxbin2, metabat2, and vamb) and consolidated using dastool. The consolidated bins from all metagenomes were pooled, filtered by completeness (>75%) and contamination (<25%), and dereplicated at 95% ANI using drep. The dataset includes a zip file of 687 genomes (Vegtype_MAGS.zip), the accession numbers for the underlying metagenomes, a csv file with MAG quality metrics and taxonomy from Genome Taxonomy Database (GTDB) and National Center for Biotechnology Information (NCBI) taxonomic representative genome proteins (EastRiver_Vegtype_drep_genome_info.csv), and a file containing MAG quality metrics and taxonomy (gtdb_drep_bin_taxonomy.csv). The dataset additionally includes a sample metadata file (EastRiver_Vegtype_sample_metadata.csv), a metadata file used to register associated samples with IGSNs (International Generic Sample Numbers) (samples.csv), a Google KML file for the sampled locations (sample_collection_sites.kml), a location metadata file (locations.csv), a file-level metadata file (flmd.csv), and a data dictionary (dd.csv) file.This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

54 ENVIRONMENTAL SCIENCES

Low frequency creep in CoNiFe films

The results of an investigation of domain wall motion excited by slow rise-time, bipolar, hard-axis pulses in vacuum deposited CoNiFe films 1500A to 2000A thick are presented. The results are consistent with those of comparable NiFe films in spite of large differences in film properties. The present low frequency creep data together with previously published results in this and other laboratories can be accounted for by a model which requires that the wall structure change usually associated with low frequency creep be predominately a gyromagnetic process. The correctness of this model is reinforced by the observation that the wall coercive force, the planar wall mobility, and the occurrence of an abrupt wall structure change are the only properties closely correlated to the creep displacement characteristics of a planar wall in low dispersion films.

Bartran, D. S.

Vigor loss in conifers due to dwarf mistletoe

Practical remote sensing techniques were developed for detecting and evaluating vigor loss in forest conifers due to dwarf mistletoe. Eastern dwarf mistletoe (Arceuthobium pusillum) infection of black spruce (Picea mariana) was investigated. A tower-tramway system, 100 feet high, was erected over an infected stand in northeast Minnesota in June and multiband/multidate photography was initiated in July and is continuing. Four 70mm film-filter combinations were used in a multicamera unit: Plus-X/Wratten 58, Plus-X/Wratten 25A, Aero Infrared/Wratten 89B, and Ektachrome Infrared/Wratten 12. The stand of mistletoe-infected black spruce under the tramway was photographed three times per day (0900, 1200 and 1500 local sun time) at approximately 10 day intervals. An extensive test site, several square miles in area, was selected in north-central Minnesota for the purpose of testing photographic specifications developed on the tramway test site. One aerial photographic flight at a variety of altitudes was accomplished over the extensive test site in August. Data analyses are not available at this time.

Meyer, M. P.

Low-frequency creep in CoNiFe films.

Domain wall motion excited by slow rise-time, bipolar, hard-axis pulses in vacuum deposited CoNiFe films from 1500 to 2000 A thick is studied. The results are consistent with those of comparable NiFe films. Furthermore, the wall coercivity is found to be the most significant sample property correlated to the low-frequency creep properties of all the samples.

Bartran, D. S.

Remote sensing aided procedure for conifer growth modeling in the northeastern Sierra Nevada

The objective of this study was to use remotely-sensed data with ground-acquired data for preparing inputs to a mathematical model for generation of a potential conifer growth map of a wildland area. The study area, jointly selected by the resource managers of the U.S. Forest Service at the Plumas National Forest and researchers, covers approximately 500 sq km in the northeastern scrapment of Sierra Nevada. The approach involved a computerized databank based on both remotely-sensed and ground-acquired data. The remotely-sensed data included Landsat Multispectral Scanner (MSS) data, NOAA-5 Very High Resolution Radiometer (VHRR) data and U-2 Color infrared photography. The ground data included U.S. Geological Survey (USGS) topographic maps, Defense Mapping Agency (DMA)/USGS digital terrain data, soil maps, and vegetation data. The results included a series of maps for the final product as well as the intermediate products. The intermediate products were potential evapotranspiration, aspect, and soil plant available water.

Smith, H. G.

Measuring near infrared spectral reflectance changes from water stressed conifer stands with AIS-2

Airborne Imaging Spectrometer-2 (AIS-2) data was acquired over two paired conifer stands for the purpose of detecting differences in spectral reflectance between stressed and natural canopies. Water stress was induced in a stand of Norway spruce and white pine by severing the sapwood near the ground. Water stress during the AIS flights was evaluated through shoot water potential and relative water content measurements. Preliminary analysis with raw AIS-2 data using SPAM indicates that there were small, inconsistent differences in absolute spectral reflectance in the near infrared 0.97 to 1.3 micron between the stressed and natural canopies.

Riggs, George

Relating the temporal change observed by AIRSAR to surface and canopy properties of mixed conifer and hardwood forests of northern Michigan

The mixed hardwood and conifer forests of northern Michigan were overflown by a 3-frequency airborne imaging radar in Apr. and Jul. 1990. A set of 10 x 10 km test sites near the University of Michigan Biological Station at Douglas Lake and within the Hiawatha National Forest in the upper peninsula of Michigan contained training stands representing the various forest species typical of forest communities across the ecotone between the coniferous boreal forest and mid-latitude hardwood and coniferous forests. The polarimetric radar data were externally calibrated to allow interdate comparisons. The Apr. flight was prior to bud-break of deciduous species and patchy snowcover was present. The Jul. flights occurred during and 2 days after heavy rain showers, and provide a unique opportunity to examine the differences in radar backscatter attributable to intercepted precipitation. Analyses show that there are significant changes in backscattering between biophysically dissimilar forest stands on any given date and also between dates for a given forest stand. These differences in backscattering can be related to moisture properties of the forest floor and the overlying canopy and also to the quantity and organizational structure of the above-ground biomass.

Dobson, M. Craig

Analysis of the dielectric properties of trunk wood in dominant conifer species from New England and Siberia

Data were collected for dominant conifer species. Dielectric properties of trunk wood were measured using a C-band dielectric probe. For certain specimens, electrical resistance was also measured using a shigometer. The water status of the trees studies was determined either by use of a Scholander pressure chamber on branch samples collected simultaneously with dielectric measurements or by fresh-weight/dry-weight assessment of wood core samples extracted and analyzed with the dielectric probe and shigometer. Diurnal delectric properties and xylem water column tension are inversely correlated such that real and imaginary dielectric values drop as tension increases. The dielectric properties were positively correlated with wood core moisture content while electrical resistance was poorly correlated with wood core moisture content in one species studied. Results support the view that dielectric properties are strongly correlated with moisture status in trunk wood, and possibly ion concentrations associated with decay processes in damaged specimens.

Ranson, K. J.

Detecting Inter-Annual Variations in the Phenology of Evergreen Conifers Using Long-Term MODIS Vegetation Index Time Series

Long-term observations of vegetation phenology can be used to monitor the response of terrestrial ecosystems to climate change. Satellite remote sensing provides the most efficient means to observe phenological events through time series analysis of vegetation indices such as the Normalized Difference Vegetation Index (NDVI). This study investigates the potential of a Photochemical Reflectance Index (PRI), which has been linked to vegetation light use efficiency, to improve the accuracy of MODIS-based estimates of phenology in an evergreen conifer forest. Timings of the start and end of the growing season (SGS and EGS) were derived from a 13-year-long time series of PRI and NDVI based on a MAIAC (multi-angle implementation of atmospheric correction) processed MODIS dataset and standard MODIS NDVI product data. The derived dates were validated with phenology estimates from ground-based flux tower measurements of ecosystem productivity. Significant correlations were found between the MAIAC time series and ground-estimated SGS (R (sup 2) equals 0.36-0.8), which is remarkable since previous studies have found it difficult to observe inter-annual phenological variations in evergreen vegetation from satellite data. The considerably noisier NDVI product could not accurately predict SGS, and EGS could not be derived successfully from any of the time series. While the strongest relationship overall was found between SGS derived from the ground data and PRI, MAIAC NDVI exhibited high correlations with SGS more consistently (R (sup 2) is greater than 0.6 in all cases). The results suggest that PRI can serve as an effective indicator of spring seasonal transitions, however, additional work is necessary to confirm the relationships observed and to further explore the usefulness of MODIS PRI for detecting phenology.

Ulsig, Laura

Remote detection of insect epidemics in conifers

With properly exposed color or infrared color film, discolored foliage caused by insect infestations in ponderosa pine is detectable on moderately small-scale photographs with acceptable accuracies. Black and white photographs which matched the wavebands of the ERTS multispectral scanner were combined into one additive color photo. This imagery was not as useful as photographs taken on color, color infrared, or color film with a minus blue filter. Based on the high-altitude color and color infrared photos obtained, it is concluded that only insect infestations larger than 100 meters in diameter are detectable on ERTS imagery.

Heller, R. C.

Remote sensing of vigor loss in conifers due to dwarf mistletoe

The initial operation of a multiband/multidate tower-tramway test site in northeastern Minnesota for the development of specifications for subsequent multiband aerial photography of more extensive study areas was completed. Multiband/multidate configurations suggested by the tower-tramway studies were and will be flown with local equipment over the Togo test site. This site was photographed by the NASA RB57F aircraft in August and September 1971. It appears that, of all the film/filter combinations attempted to date (including optical recombining of several spectral band images via photo enhancement techniques), Ektachrome infrared film with a Wratten 12 filter is the best for detecting dwarf mistletoe, and other tree diseases as well. Using this film/filter combination, infection centers are easily detectable even on the smallest photo scale (1:100,000) obtained on the Togo site.

Meyer, M. P.

Remote sensing applications to forest vegetation classification and conifer vigor loss due to dwarf mistletoe

Criteria was established for practical remote sensing of vegetation stress and mortality caused by dwarf mistletoe infections in black spruce subboreal forest stands. The project was accomplished in two stages: (1) A fixed tower-tramway site in an infected black spruce stand was used for periodic multispectral photo coverage to establish basic film/filter/scale/season/weather parameters; (2) The photographic combinations suggested by the tower-tramway tests were used in low, medium, and high altitude aerial photography.

Douglass, R. W.

The effect of soil water deficit on the reflectance of conifer seedling canopies

The effects of soil water deficit on spruce and pine seedling canopy reflectance, needle reflectance and transmittance, and canopy density were measured in a greenhouse with a diffuse source of radiant flux. A potential for early or pre-visual detection of plant water stress was not supported by these measurements made at visible, and reflected infrared wavelengths to 1950 nm. Needles were found to transmit approximately thirty percent of the radiant flux incident on them at 780 nm, ten percent at 700 nm, and were found to be opaque at 450, 550, 600 and 650 nm.

Fox, L.

Geometric-optical Modeling of a Conifer Forest Canopy

The objective of this research is to explore how the geometry of trees in forest stands influences the reflectance of the forest as imaged from space. Most plant canopy modeling has viewed the canopy as an assemblage of plane-parallel layers on top of a soil surface. For these models, leaf angle distribution, leaf area index, and the angular transmittance and reflectance of leaves are the primary optical and geometric parameters. Such models are now sufficiently well developed to explain most of the variance in angular reflectance measurements observed from homogeneous plant canopies. However, forest canopies as imaged by airborne and spaceborne scanners exhibit considerable variance at quite a different scale. Brightness values vary strongly from one pixel to the next primarily as a function of the number of trees they contain. At this scale, the forest canopy is nonuniform and discontinuous. This research focuses on a discrete-element, geometric-optical view of the forest canopy.

Strahler, A. H.

A new technique to measure the spectral properties of conifer needles

A technique that enables the measurement of reflectance and transmittance of narrow leaves or needles with spectroradiometers equipped with a light source and integrating sphere is described. Measurement procedures and formulas for optical property calculations are presented. A test of the techniques resulted in absolute reflectance differences of 3 percent or less when comparing optical properties measured for whole leaves and narrow strips cut from the leaves.

Daughtry, C. S. T.