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Computational Estimation by Scientific Data Mining with Classical Methods to Automate Learning Strategies of Scientists

Experimental results are often plotted as 2-dimensional graphical plots (aka graphs) in scientific domains depicting dependent versus independent variables to aid visual analysis of processes. Repeatedly performing laboratory experiments consumes significant time and resources, motivating the need for computational estimation. The goals are to estimate the graph obtained in an experiment given its input conditions, and to estimate the conditions that would lead to a desired graph. Existing estimation approaches often do not meet accuracy and efficiency needs of targeted applications. We develop a computational estimation approach called AutoDomainMine that integrates clustering and classification over complex scientific data in a framework so as to automate classical learning methods of scientists. Knowledge discovered thereby from a database of existing experiments serves as the basis for estimation. Challenges include preserving domain semantics in clustering, finding matching strategies in classification, striking a good balance between elaboration and conciseness while displaying estimation results based on needs of targeted users, and deriving objective measures to capture subjective user interests. These and other challenges are addressed in this work. The AutoDomainMine approach is used to build a computational estimation system, rigorously evaluated with real data in Materials Science. Our evaluation confirms that AutoDomainMine provides desired accuracy and efficiency in computational estimation. It is extendable to other science and engineering domains as proved by adaptation of its sub-processes within fields such as Bioinformatics and Nanotechnology.

Computer Science↗

A VXS [VITA41] Trigger Processor for the 12GEV Experimental Programs at Jefferson Lab

The VXS_Trigger_Processor [VTP] was developed and commissioned for CLAS12 in the fall of 2016. This board is a VITA41 switch card and it collects data from a variety of front-end TDC and Flash ADC modules. The VTP has since been used in several experiments at Jefferson Lab serving as the L1 trigger module for a variety of detector types, such as stacked calorimeters, strip calorimeters, time-of-flight, Cerenkov, hodoscopes, drift chambers, and silicon strips. Trigger algorithms implemented include cluster finding (1D, 2D), drift chamber segment and road finding, geometry matching between various detectors, particle counting, and general global trigger bit processing. The VTP is also capable of reading out each front-end crate with up to 40Gbps Ethernet which is an enormous increase compared to the currently used 200MB/s VME bus. Recent progress has been made to show that a firmware and software upgrade can enable existing Jefferson Lab front-end crates to operate in a streaming DAQ mode. In February 2020, tests will be performed on a full calorimeter and matched hodoscope which are components of the CLAS12 Forward Tagger detector system with beam in Hall B. This paper details the hardware performance, triggered, and streaming applications that have been implemented using the VTP for several experiments at Jefferson Lab.

ABBOTT, David↗

The Compilation and Validation of the Spectroscopic Redshift Catalogs for the DESI-COSMOS and DESI-XMM-LSS Fields

Over several dedicated programs that include targets beyond the main cosmological samples, the Dark Energy Spectroscopic Instrument collected spectra for 304,970 unique objects in two fields centered on the COSMOS and XMM-LSS fields. In this work, we develop spectroscopic redshift robustness criteria for those spectra, validate these criteria using visual inspection, and provide two custom value-added catalogs with our redshift characterizations. With these criteria, we reliably classify 212,935 galaxies below z < 1.6, 9713 quasars, and 35,222 stars. The resulting catalogs achieve a redshift purity exceeding 99.4% across all galaxy samples. As a critical element in characterizing the selection function, we provide the description of 70 different algorithms that were used to select these targets from imaging data. To facilitate joint imaging/spectroscopic analyses, we provide row-matched photometry from the Dark Energy Camera, Hyper-Suprime Cam, and public COSMOS2020 photometric catalogs. Finally, we demonstrate example applications of these large catalogs to photometric redshift estimation, cluster finding, and completeness studies.

Ratajczak, J. [Univ. of Utah, Salt Lake City, UT (↗

How to cluster in parallel with neural networks

Partitioning a set of N patterns in a d-dimensional metric space into K clusters - in a way that those in a given cluster are more similar to each other than the rest - is a problem of interest in astrophysics, image analysis and other fields. As there are approximately K(N)/K (factorial) possible ways of partitioning the patterns among K clusters, finding the best solution is beyond exhaustive search when N is large. Researchers show that this problem can be formulated as an optimization problem for which very good, but not necessarily optimal solutions can be found by using a neural network. To do this the network must start from many randomly selected initial states. The network is simulated on the MPP (a 128 x 128 SIMD array machine), where researchers use the massive parallelism not only in solving the differential equations that govern the evolution of the network, but also by starting the network from many initial states at once, thus obtaining many solutions in one run. Researchers obtain speedups of two to three orders of magnitude over serial implementations and the promise through Analog VLSI implementations of speedups comensurate with human perceptual abilities.

Kamgar-Parsi, Behzad↗

A US coordination Facility for the Spectrum-X-Gamma Observatory

We have completed our efforts in support of the Spectrum X Gamma mission under a NASA grant. These activities have included direct support to the mission, developing unifying tools applicable to SXG and other X-ray astronomy missions, and X-ray astronomy research to maintain our understanding of the importance and relevance of SXG to the field. SXG provides: 1) Simultaneous Multiwavelength Capability; 2) Large Field of View High Resolution Imaging Spectroscopy; 3) Sensitive Polarimetry with SXRP (Stellar X-Ray Polarimeter). These capabilities will ensure the fulfillment of the following objectives: understanding the accretion dynamics and the importance of reprocessing, upscattering, and disk viscosity around black holes; studying cluster mergers; spatially resolving cluster cooling flows to detect cooling gas; detecting cool gas in cluster outskirts in absorption; mapping gas in filaments around clusters; finding the 'missing' baryons in the Universe; determining the activity history of the black hole in the Galactic Center of our own central black hole; determining pulsar beam geometry; searching for the Lense-Thirring effect in black hole sources; constraining emission mechanisms and accretion geometry in AGN.

Forman, W.↗

Hyperspectral Image Classification using a Self-Organizing Map

The use of hyperspectral data to determine the abundance of constituents in a certain portion of the Earth's surface relies on the capability of imaging spectrometers to provide a large amount of information at each pixel of a certain scene. Today, hyperspectral imaging sensors are capable of generating unprecedented volumes of radiometric data. The Airborne Visible/Infrared Imaging Spectrometer (AVIRIS), for example, routinely produces image cubes with 224 spectral bands. This undoubtedly opens a wide range of new possibilities, but the analysis of such a massive amount of information is not an easy task. In fact, most of the existing algorithms devoted to analyzing multispectral images are not applicable in the hyperspectral domain, because of the size and high dimensionality of the images. The application of neural networks to perform unsupervised classification of hyperspectral data has been tested by several authors and also by us in some previous work. We have also focused on analyzing the intrinsic capability of neural networks to parallelize the whole hyperspectral unmixing process. The results shown in this work indicate that neural network models are able to find clusters of closely related hyperspectral signatures, and thus can be used as a powerful tool to achieve the desired classification. The present work discusses the possibility of using a Self Organizing neural network to perform unsupervised classification of hyperspectral images. In sections 3 and 4, the topology of the proposed neural network and the training algorithm are respectively described. Section 5 provides the results we have obtained after applying the proposed methodology to real hyperspectral data, described in section 2. Different parameters in the learning stage have been modified in order to obtain a detailed description of their influence on the final results. Finally, in section 6 we provide the conclusions at which we have arrived.

Martinez, P.↗

A Stochastic Model of Space-Time Variability of Tropical Rainfall: I. Statistics of Spatial Averages

Global maps of rainfall are of great importance in connection with modeling of the earth s climate. Comparison between the maps of rainfall predicted by computer-generated climate models with observation provides a sensitive test for these models. To make such a comparison, one typically needs the total precipitation amount over a large area, which could be hundreds of kilometers in size over extended periods of time of order days or months. This presents a difficult problem since rain varies greatly from place to place as well as in time. Remote sensing methods using ground radar or satellites detect rain over a large area by essentially taking a series of snapshots at infrequent intervals and indirectly deriving the average rain intensity within a collection of pixels , usually several kilometers in size. They measure area average of rain at a particular instant. Rain gauges, on the other hand, record rain accumulation continuously in time but only over a very small area tens of centimeters across, say, the size of a dinner plate. They measure only a time average at a single location. In making use of either method one needs to fill in the gaps in the observation - either the gaps in the area covered or the gaps in time of observation. This involves using statistical models to obtain information about the rain that is missed from what is actually detected. This paper investigates such a statistical model and validates it with rain data collected over the tropical Western Pacific from ship borne radars during TOGA COARE (Tropical Oceans Global Atmosphere Coupled Ocean-Atmosphere Response Experiment). The model incorporates a number of commonly observed features of rain. While rain varies rapidly with location and time, the variability diminishes when averaged over larger areas or longer periods of time. Moreover, rain is patchy in nature - at any instant on the average only a certain fraction of the observed pixels contain rain. The fraction of area covered by rain decreases, as the size of a pixel becomes smaller. This means that within what looks like a patch of rainy area in a coarse resolution view with larger pixel size, one finds clusters of rainy and dry patches when viewed on a finer scale. The model makes definite predictions about how these and other related statistics depend on the pixel size. These predictions were found to agree well with data. In a subsequent second part of the work we plan to test the model with rain gauge data collected during the TRMM (Tropical Rainfall Measuring Mission) ground validation campaign.

Kundu, Prasun K.↗

The Advanced X-ray Spectroscopy and Imaging Observatory (AXSIO)

Following recommendations from the 2010 "New Worlds, New Horizons" (NWNH) report, the Advanced X-ray Spectroscopy and Imaging Observatory (AXSIO) concept streamlines the International X-ray Observatory (IXO) mission to concentrate on the science objectives that are enabled by high-resolution spectroscopic capabilities. AXSIO will trace orbits close to the event horizon of black holes, measure black hole spin for tens of supermassive black holes (SMBH), use spectroscopy to characterize outflows and the environment of AGN during their peak activity, observe 5MBH out to redshift z=6, map bulk motions and turbulence in galaxy clusters, find the missing baryons in the cosmic web using background quasars, and observe the process of cosmic feedback where black holes and supernovae inject energy on galactic and intergalactic scales. These measurements are enabled by a 0.9 sq m collecting area at 1.25 keV, a micro calorimeter array providing high-resolution spectroscopic imaging and a deployable high efficiency grating spectrometer. AXSIO delivers a 30-fold increase in effective area for high resolution spectroscopy. The key simplifications are guided by recommendations in the NWNH panel report include a reduction in focal length from 20m to 10m, eliminating the extendable optical bench, and a reduction in the instrument complement from six to two, avoiding a movable instrument platform. A focus on spectroscopic science allows the spatial resolution requirement to be relaxed to 10 arc sec (with a 5 arc sec goal). These simplifications decrease the total mission cost to under the $2B cost to NASA recommended by NWNH. AXSIO will be available to the entire astronomical community with observing allocations based on peer-review.

White, Nicholas E.↗

AXSIO and the NASA X-ray Mission Concept Study

The Advanced X-ray Spectroscopy and Imaging Observatory (AXSIO) focuses on the IXO science objectives ranked highly by the Decadal Survey: tracing orbits near 5MBH event horizons, measuring BH spin, characterizing outflows and the environment of AGN, observing 5MBH to z=6, mapping gas motion in clusters, finding the missing baryons, and observing cosmic feedback. AXSIO's streamlining of IXO includes reduction in the instrument complement to a calorimeter and a grating spectrometer, and relaxation of the angular resolution to 10". With 0.9 m2 effective area at 1.25 keV, AXSIO delivers a 30-fold performance increase over current missions for high-resolution spectroscopy and spectroscopic timing. NASA has also undertaken a study of notional missions to determine lower cost approaches to accomplishing IXO objectives over the next decade. Three concepts were studied; which as a group encompass the full range of IXO science. The capabilities and architecture of these missions are summarized.

Petre, Robert↗

Dark Energy Survey Year 3 results: calibration of lens sample redshift distributions using clustering redshifts with BOSS/eBOSS

ABSTRACT We present clustering redshift measurements for Dark Energy Survey (DES) lens sample galaxies used in weak gravitational lensing and galaxy clustering studies. To perform these measurements, we cross-correlate with spectroscopic galaxies from the Baryon Acoustic Oscillation Survey (BOSS) and its extension, eBOSS. We validate our methodology in simulations, including a new technique to calibrate systematic errors that result from the galaxy clustering bias, and we find that our method is generally unbiased in calibrating the mean redshift. We apply our method to the data, and estimate the redshift distribution for 11 different photometrically selected bins. We find general agreement between clustering redshift and photometric redshift estimates, with differences on the inferred mean redshift found to be below |Δz| = 0.01 in most of the bins. We also test a method to calibrate a width parameter for redshift distributions, which we found necessary to use for some of our samples. Our typical uncertainties on the mean redshift ranged from 0.003 to 0.008, while our uncertainties on the width ranged from 4 to 9 per cent. We discuss how these results calibrate the photometric redshift distributions used in companion papers for DES Year 3 results.

79 ASTRONOMY AND ASTROPHYSICS↗

Systematic characterization of unknown compounds via dimensionality reduction of time series

Analysis of ambient aerosols provides valuable insight into particle sources and formation chemistry. However, due to the complexity of atmospheric data and the dynamic nature of aerosol composition, a substantial fraction of data often become discarded by conventional analysis methods. Furthermore, a large fraction of chemical species within those data are unidentifiable due to a lack of matching spectral information, resulting in suboptimal characterization of chemical composition. Previous work has demonstrated techniques for cataloging analytes in a chromatographic dataset by deconvolution of mass spectra, but integration of these analytes throughout a large dataset remains time consuming. Here, we present a method to automatically identify an ion for quantitation for single-ion chromatogram based peak fitting and integration, enabling comprehensive integration of analytes with minimal user interaction. The resulting time series are clustered with a machine-learning based dimensionality reduction technique to systematically investigate the underlying characteristics of the categorized analytes and gain new insights into the chemical composition and physicochemical properties of the unidentifiable analytes. We apply these methods to existing atmospheric datasets collected in Manacapuru, Brazil during the GoAmazon2014/5 campaign to identify new analytes and interpret their variability and transformations in the atmosphere. The analysis results generate 408 time series from cataloged analytes of interest, and the clustering of those time series with spherical k-means results in 8 distinct clusters. We find the analytes form clusters based on their distinct physicochemical properties, demonstrating the method’s ability to systematically identify and selectively filter contaminants and instrumental analytes and characterize the unidentifiable analytes.

54 ENVIRONMENTAL SCIENCES↗

"A Richness Study of 14 Distant X-Ray Clusters from the 160 Square Degree Survey"

We have measured the surface density of galaxies toward 14 X-ray-selected cluster candidates at redshifts z(sub i) 0.46, and we show that they are associated with rich galaxy concentrations. These clusters, having X-ray luminosities of Lx(0.5-2 keV) approx. (0.5 - 2.6) x 10(exp 44) ergs/ sec are among the most distant and luminous in our 160 deg(exp 2) ROSAT Position Sensitive Proportional Counter cluster survey. We find that the clusters range between Abell richness classes 0 and 2 and have a most probable richness class of 1. We compare the richness distribution of our distant clusters to those for three samples of nearby clusters with similar X-ray luminosities. We find that the nearby and distant samples have similar richness distributions, which shows that clusters have apparently not evolved substantially in richness since redshift z=0.5. There is, however, a marginal tendency for the distant clusters to be slightly poorer than nearby clusters, although deeper multicolor data for a large sample would be required to confirm this trend. We compare the distribution of distant X-ray clusters in the L(sub X)-richness plane to the distribution of optically selected clusters from the Palomar Distant Cluster Survey. The optically selected clusters appear overly rich for their X-ray luminosities, when compared to X-ray-selected clusters. Apparently, X-ray and optical surveys do not necessarily sample identical mass concentrations at large redshifts. This may indicate the existence of a population of optically rich clusters with anomalously low X-ray emission, More likely, however, it reflects the tendency for optical surveys to select unvirialized mass concentrations, as might be expected when peering along large-scale filaments.

Jones, Christine↗

Dark Energy Survey Year 3 Results: Cosmological Constraints from Cluster Abundances, Weak Lensing, and Galaxy Clustering

Galaxy clusters provide a unique probe of the late-time cosmic structure and serve as a powerful independent test of the $\Lambda$CDM model. This work presents the first set of cosmological constraints derived with ~16,000 optically selected redMaPPer clusters across nearly 5,000 $\rm{deg}^2$ using DES Year 3 data sets. Our analysis leverages a consistent modeling framework for galaxy cluster cosmology and DES-Y3 joint analyses of galaxy clustering and weak lensing (3x2pt), ensuring direct comparability with the DES-Y3 3x2pt analysis. We obtain constraints of $S_8 = 0.864 \pm 0.035$ and $\Omega_{\rm{m}} = 0.265^{+0.019}_{-0.031}$ from the cluster-based data vector. We find that cluster constraints and 3x2pt constraints are consistent under the $\Lambda$CDM model with a Posterior Predictive Distribution (PPD) value of $0.53$. The consistency between clusters and 3x2pt provides a stringent test of $\Lambda$CDM across different mass and spatial scales. Jointly analyzing clusters with 3x2pt further improves cosmological constraints, yielding $S_8 = 0.811^{+0.022}_{-0.020}$ and $\Omega_{\rm{m}} = 0.294^{+0.022}_{-0.033}$, a $24\%$ improvement in the $\Omega_{\rm{m}}-S_8$ figure-of-merit over 3x2pt alone. Moreover, we find no significant deviation from the Planck CMB constraints with a probability to exceed (PTE) value of $0.6$, significantly reducing previous $S_8$ tension claims. Finally, combining DES 3x2pt, DES clusters, and Planck CMB places an upper limit on the sum of neutrino masses of $\sum m_\nu < 0.26$ eV at 95% confidence under the $\Lambda$CDM model. These results establish optically selected clusters as a key cosmological probe and pave the way for cluster-based analyses in upcoming Stage-IV surveys such as LSST, Euclid, and Roman.

79 ASTRONOMY AND ASTROPHYSICS↗

Dark energy survey year 3 results: Cosmological constraints from cluster abundances, weak lensing, and galaxy clustering

Galaxy clusters provide a unique probe of the late-time cosmic structure and serve as a powerful independent test of the Λ⁢CDM model. This work presents the first set of cosmological constraints derived with ∼16,000 optically selected redMaPPer clusters across nearly 5000 deg 2 using DES year 3 datasets. Our analysis leverages a consistent modeling framework for galaxy cluster cosmology and DES-Y3 joint analyses of galaxy clustering and weak lensing (3 × 2⁢pt), ensuring direct comparability with the DES-Y3 3 × 2⁢pt analysis. Here, we obtain constraints of 𝑆 8 = 0.864 ± 0.035 and Ω m = $0.26⁢5^{+0.019}_{−0.031}$ from the cluster-based data vector. We find that cluster constraints and 3 × 2⁢pt constraints are consistent under the Λ⁢CDM model with a posterior predictive distribution (PPD) value of 0.53. The consistency between clusters and 3 × 2⁢pt provides a stringent test of Λ⁢CDM across different mass and spatial scales. Jointly analyzing clusters with 3 × 2⁢pt further improves cosmological constraints, yielding 𝑆 8 = $0.81⁢1^{+0.022}_{−0.020}$ and Ω m = $0.29⁢4^{+0.022}_{−0.033}$, a 24% improvement in the Ω m − 𝑆 8 figure of merit over 3 × 2⁢pt alone. Moreover, we find no significant deviation from the Planck CMB constraints with a probability to exceed (PTE) value of 0.6, significantly reducing previous 𝑆 8 tension claims. Finally, combining DES 3 × 2⁢pt, DES clusters, and Planck CMB places an upper limit on the sum of neutrino masses of ∑𝑚 𝜈 < 0.26 eV at 95% confidence under the Λ⁢CDM model. These results establish optically selected clusters as a key cosmological probe and pave the way for cluster-based analyses in upcoming stage-IV surveys such as LSST, Euclid, and Roman.

Abbott, T. M. C. [NSF’s National Optical-Infrared ↗

Clash of Titans: the impact of cluster mergers in the galaxy cluster red sequence

ABSTRACT Merging of galaxy clusters are some of the most energetic events in the Universe, and they provide a unique environment to study galaxy evolution. We use a sample of 84 merging and relaxed SPT galaxy clusters candidates, observed with the Dark Energy Camera in the 0.11 < z < 0.88 redshift range, to build colour–magnitude diagrams to characterize the impact of cluster mergers on the galaxy population. We divided the sample between relaxed and disturbed, and in two redshifts bin at z = 0.55. When comparing the high-z to low-z clusters we find the high-z sample is richer in blue galaxies, independently of the cluster dynamical state. In the high-z bin, we find that disturbed clusters exhibit a larger scatter in the red sequence, with wider distribution and an excess of bluer galaxies compared to relaxed clusters, while in the low-z bin we find a complete agreement between the relaxed and disturbed clusters. Our results support the scenario in which massive cluster halos at z < 0.55 galaxies are quenched as satellites of another structure, i.e. outside the cluster, while at z ≥ 0.55 the quenching is dominated by in situ processes.

Aldás, Franklin (ORCID:0000000290215114)↗

The intrinsic alignment of red galaxies in DES Y1 redMaPPer galaxy clusters

ABSTRACT Clusters of galaxies trace the most non-linear peaks in the cosmic density field. The weak gravitational lensing of background galaxies by clusters can allow us to infer their masses. However, galaxies associated with the local environment of the cluster can also be intrinsically aligned due to the local tidal gradient, contaminating any cosmology derived from the lensing signal. We measure this intrinsic alignment in Dark Energy Survey (DES) Year 1 redMaPPer clusters. We find evidence of a non-zero mean radial alignment of galaxies within clusters between redshifts 0.1–0.7. We find a significant systematic in the measured ellipticities of cluster satellite galaxies that we attribute to the central galaxy flux and other intracluster light. We attempt to correct this signal, and fit a simple model for intrinsic alignment amplitude (AIA) to the measurement, finding AIA = 0.15 ± 0.04, when excluding data near the edge of the cluster. We find a significantly stronger alignment of the central galaxy with the cluster dark matter halo at low redshift and with higher richness and central galaxy absolute magnitude (proxies for cluster mass). This is an important demonstration of the ability of large photometric data sets like DES to provide direct constraints on the intrinsic alignment of galaxies within clusters. These measurements can inform improvements to small-scale modelling and simulation of the intrinsic alignment of galaxies to help improve the separation of the intrinsic alignment signal in weak lensing studies.

79 ASTRONOMY AND ASTROPHYSICS↗

The track-length extension fitting algorithm for energy measurement of interacting particles in liquid argon TPCs and its performance with ProtoDUNE-SP data

This paper introduces a novel track-length extension fitting algorithm for measuring the kinetic energies of inelastically interacting particles in liquid argon time projection chambers (LArTPCs). The algorithm finds the most probable offset in track length for a track-like object by comparing the measured ionization density as a function of position with a theoretical prediction of the energy loss as a function of the energy, including models of electron recombination and detector response. The algorithm can be used to measure the energies of particles that interact before they stop, such as charged pions that are absorbed by argon nuclei. The algorithm's energy measurement resolutions and fractional biases are presented as functions of particle kinetic energy and number of track hits using samples of stopping secondary charged pions in data collected by the ProtoDUNE-SP detector, and also in a detailed simulation. Additional studies describe the impact of the dE/dx model on energy measurement performance. The method described in this paper to characterize the energy measurement performance can be repeated in any LArTPC experiment using stopping secondary charged pions.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Energy calibration of germanium detectors for the Majorana Demonstrator

The Majorana Demonstrator was a search for neutrinoless double-beta decay (0νββ) in the 76 Ge isotope. It was staged at the 4850-foot level of the Sanford Underground Research Facility (SURF) in Lead, SD. The experiment consisted of 58 germanium detectors housed in a low background shield and was calibrated once per week by deploying a 228 Th line source for 1 to 2 hours. The energy scale calibration determination for the detector array was automated using custom analysis tools. We describe the offline procedure for calibration of the Demonstrator germanium detectors, including the simultaneous fitting of multiple spectral peaks, estimation of energy scale uncertainties, and the automation of the calibration procedure.

47 OTHER INSTRUMENTATION↗