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At least 37 records · Page 2

Nonlinear model of infection wavy oscillation of COVID-19 in Japan based on diffusion kinetics

The infectious propagation of SARS-CoV-2 is continuing worldwide, and specifically, Japan is facing severe circumstances. Medical resource maintenance and action limitations remain the central measures. An analysis of long-term follow-up reports in Japan shows that the infection number follows a unique wavy oscillation, increasing and decreasing over time. However, only a few studies explain the infection wavy oscillation. This study introduces a novel nonlinear mathematical model of the new infection wavy oscillation by applying the macromolecule diffusion theory. In this model, the diffusion coefficient that depends on population density gives nonlinearity in infection propagation. As a result, our model accurately simulated infection wavy oscillations, and the infection wavy oscillation frequency and amplitude were closely linked with the recovery rate of infected individuals. In conclusion, our model provides a novel nonlinear contact infection analysis framework.

60 APPLIED LIFE SCIENCES↗

Mapping Critical Vulnerabilities in Natural Gas Pipeline Systems through Network Centrality and GIS Analytics

Natural gas plays a central role in the US energy landscape, providing 43% of electricity generation in 2023. Its exclusive recovery ability on pipelines for transmission underscores the importance of understanding the disruption recovery ability of this infrastructure. This study employs a network-based analytical framework integrating geographic information systems (GIS) with multiple centrality measures—betweenness, closeness, degree, and eigenvector—to pinpoint key segments and evaluate the structural robustness of the national pipeline network. Pipelines are grouped by System ID and Operator ID to capture variations across organizational and physical structures. The analysis reveals uneven patterns of network influence, where certain pipelines function as critical connectors or dominant hubs. Spatial mapping highlights geographic dependencies and potential chokepoints, offering a clear view of where targeted risk prevention measures would be most effective. The findings provide practical guidance for prioritizing maintenance, enhancing system robustness, and mitigating risks to ensure a stable and secure energy supply. Future research will expand the framework to incorporate dynamic operational data and real-time network behavior.

Peterson, Steven [ORNL] (ORCID:0000000287672998)↗

Centrality determination in heavy-ion collisions with the LHCb detector

The centrality of heavy-ion collisions is directly related to the created medium in these interactions. A procedure to determine the centrality of collisions with the LHCb detector is implemented for lead-lead collisions at √ s NN = 5 TeV and lead-neon fixed-target collisions at √ s NN = 69 GeV. The energy deposits in the electromagnetic calorimeter are used to determine and define the centrality classes. The correspondence between the number of participants and the centrality for the lead-lead collisions is in good agreement with the correspondence found in other experiments, and the centrality measurements for the lead-neon collisions presented here are performed for the first time in fixed-target collisions at the LHC.

47 OTHER INSTRUMENTATION↗

A glimpse into the fungal metabolomic abyss: Novel network analysis reveals relationships between exogenous compounds and their outputs

Fungal specialized metabolites are a major source of beneficial compounds that are routinely isolated, characterized, and manufactured as pharmaceuticals, agrochemical agents, and industrial chemicals. The production of these metabolites is encoded by biosynthetic gene clusters that are often silent under standard growth conditions. There are limited resources for characterizing the direct link between abiotic stimuli and metabolite production. Herein, we introduce a network analysis-based, data-driven algorithm comprising two routes to characterize the production of specialized fungal metabolites triggered by different exogenous compounds: the direct route and the auxiliary route. Both routes elucidate the influence of treatments on the production of specialized metabolites from experimental data. The direct route determines known and putative metabolites induced by treatments and provides additional insight over traditional comparison methods. The auxiliary route is specific for discovering unknown analytes, and further identification can be curated through online bioinformatic resources. We validated our algorithm by applying chitooligosaccharides and lipids at two different temperatures to the fungal pathogen Aspergillus fumigatus. After liquid chromatography–mass spectrometry quantification of significantly produced analytes, we used network centrality measures to rank the treatments’ ability to elucidate these analytes and confirmed their identity through fragmentation patterns or in silico spiking with commercially available standards. Later, we examined the transcriptional regulation of these metabolites through real-time quantitative polymerase chain reaction. Our data-driven techniques can complement existing metabolomic network analysis by providing an approach to track the influence of any exogenous stimuli on metabolite production. Our experimental-based algorithm can overcome the bottlenecks in elucidating novel fungal compounds used in drug discovery.

59 BASIC BIOLOGICAL SCIENCES↗

Exploring the fragmentation efficiency of proteins analyzed by MALDI-TOF-TOF tandem mass spectrometry using computational and statistical analyses

Matrix-assisted laser desorption/ionization time-of-flight-time-of-flight (MALDI-TOF-TOF) tandem mass spectrometry (MS/MS) is a rapid technique for identifying intact proteins from unfractionated mixtures by top-down proteomic analysis. MS/MS allows isolation of specific intact protein ions prior to fragmentation, allowing fragment ion attribution to a specific precursor ion. However, the fragmentation efficiency of mature, intact protein ions by MS/MS post-source decay (PSD) varies widely, and the biochemical and structural factors of the protein that contribute to it are poorly understood. With the advent of protein structure prediction algorithms such as Alphafold2, we have wider access to protein structures for which no crystal structure exists. In this work, we use a statistical approach to explore the properties of bacterial proteins that can affect their gas phase dissociation via PSD. We extract various protein properties from Alphafold2 predictions and analyze their effect on fragmentation efficiency. Our results show that the fragmentation efficiency from cleavage of the polypeptide backbone on the C-terminal side of glutamic acid (E) and asparagine (N) residues were nearly equal. In addition, we found that the rearrangement and cleavage on the C-terminal side of aspartic acid (D) residues that result from the aspartic acid effect (AAE) were higher than for E- and N-residues. From residue interaction network analysis, we identified several local centrality measures and discussed their implications regarding the AAE. We also confirmed the selective cleavage of the backbone at D-proline bonds in proteins and further extend it to N-proline bonds. Finally, we note an enhancement of the AAE mechanism when the residue on the C-terminal side of D-, E- and N-residues is glycine. To the best of our knowledge, this is the first report of this phenomenon. Our study demonstrates the value of using statistical analyses of protein sequences and their predicted structures to better understand the fragmentation of the intact protein ions in the gas phase.

59 BASIC BIOLOGICAL SCIENCES↗

Description of the Gas Sampling and Circulation System for the LYNM PE1-A Experiment

A series of multiphysics experiments, referred to as Physics Experiment 1 (PE1) is underway at the U.S. Nevada National Security Site. The PE1 series includes detonations of three underground chemical explosions. As the name implies, there are a number of experiments investigating the signals generated by the explosion. The experiment series objectives are outlined in a report from Lawrence Livermore National Laboratory.1 One of the experiments is a gas migration experiment. Gas tracers were imbedded in the explosives and gas sampling boreholes were installed in the formation in the test bed. Connected to the monitoring points is a circulation system that moves gas to a central measurement location. This report does not describe the gas analysis or collection systems, but rather the circulation system that provides the gas for measurement. Here, we have combined four project documents into a single report that describes the design, build, installation, testing, and operation of the gas sampling network.

42 ENGINEERING↗

Year-round trace gas measurements in the central Arctic during the MOSAiC expedition

Despite the key role of the Arctic in the global Earth system, year-round in-situ atmospheric composition observations within the Arctic are sparse and mostly rely on measurements at ground-based coastal stations. Measurements of a suite of in-situ trace gases were performed in the central Arctic during the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition. These observations give a comprehensive picture of year-round near-surface atmospheric abundances of key greenhouse and trace gases, i.e., carbon dioxide, methane, nitrous oxide, ozone, carbon monoxide, dimethylsulfide, sulfur dioxide, elemental mercury, and selected volatile organic compounds (VOCs). Redundancy in certain measurements supported continuity and permitted cross-evaluation and validation of the data. This paper gives an overview of the trace gas measurements conducted during MOSAiC and highlights the high quality of the monitoring activities. In addition, in the case of redundant measurements, merged datasets are provided and recommended for further use by the scientific community.

54 ENVIRONMENTAL SCIENCES↗

Multi-energy reconstructions, central electron temperature measurements, and early detection of the birth and growth of runaway electrons using a versatile soft x-ray pinhole camera at MST

A multi-energy soft x-ray pinhole camera has been designed, built, and deployed at the Madison Symmetric Torus to aid the study of particle and thermal transport, as well as MHD stability physics. This novel imaging diagnostic technique employs a pixelated x-ray detector in which the lower energy threshold for photon detection can be adjusted independently on each pixel. The detector of choice is a PILATUS3 100 K with a 450 μm thick silicon sensor and nearly 100 000 pixels sensitive to photon energies between 1.6 and 30 keV. An ensemble of cubic spline smoothing functions has been applied to the line-integrated data for each time-frame and energy-range, obtaining a reduced standard-deviation when compared to that dominated by photon-noise. The multi-energy local emissivity profiles are obtained from a 1D matrix-based Abel-inversion procedure. Central values of Te can be obtained by modeling the slope of the continuum radiation from ratios of the inverted radial emissivity profiles over multiple energy ranges with no a priori assumptions of plasma profiles, magnetic field reconstruction constraints, high-density limitations, or need of shot-to-shot reproducibility. In tokamak plasmas, a novel application has recently been tested for early detection, 1D imaging, and study of the birth, exponential growth, and saturation of runaway electrons at energies comparable to 100 × Te,0; thus, early results are also presented.

Delgado-Aparicio, L. F. (ORCID:0000000167394380)↗

Observation of Medium-Induced Yield Enhancement and Acoplanarity Broadening of Low-𝑝T Jets from Measurements in 𝑝⁢𝑝 and Central Pb-Pb Collisions at $\sqrt{s_{NN}}$ = 5.02 TeV

The ALICE Collaboration reports the measurement of semi-inclusive distributions of charged-particle jets recoiling from a high transverse momentum (high p T ) hadron trigger in proton-proton and central Pb-Pb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV. A data-driven statistical method is used to mitigate the large uncorrelated background in central Pb-Pb collisions. Recoil jet distributions are reported for jet resolution parameter R = 0.2, 0.4, and 0.5 in the range 7 < p T.jet < 140 GeV=c and trigger-recoil jet azimuthal separation π/2 < Δφ < π. The measurements exhibit a marked medium-induced jet yield enhancement at low p T and at large azimuthal deviation from Δφ ~ π. The enhancement is characterized by its dependence on Δφ, which has a slope that differs from zero by 4.7σ. Comparisons to model calculations incorporating different formulations of jet quenching are reported. These comparisons indicate that the observed yield enhancement arises from the response of the QGP medium to jet propagation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Synchronized Phasor Measurement Unit-based Central Controller for Normal and Contingent Operation of a High-Capacity HVDC Macrogrid for the Continental US

This paper presents a Synchronized Phasor Measurement Unit (PMU) based controller to support the coordination and operation of a high-capacity high-voltage direct current (HVDC) macrogrid transmission for the continental US. The proposed controller allows for optimal scheduling of each segment of the multi-terminal HVDC network under normal and contingent conditions, while considering minimum levels of frequency response requirements. The performance of the proposed controller is tested on a 100,222-bus representation of the US Eastern and Western interconnections. Results show that a centralized PMU-based controller improves the frequency nadir of the HVDC macrogrid under contingency conditions by 25.9%. Furthermore, the primary frequency response (PFR) of the HVDC macrogrid is increased by 33.4%. The performance of each interconnection under the largest credible contingency conditions is also discussed.

Mohan, Nihal↗

Prompt D 0 , D + , and D* + production in Pb–Pb collisions at $ \sqrt{s_{\mathrm{NN}}} $ = 5.02 TeV

The production of prompt D 0 , D + , and D* + mesons was measured at midrapidity (|y| < 0.5) in Pb–Pb collisions at the centre-of-mass energy per nucleon–nucleon pair $\sqrt{s_{NN}}$ = 5.02 TeV with the ALICE detector at the LHC. The D mesons were reconstructed via their hadronic decay channels and their production yields were measured in central (0–10%) and semicentral (30–50%) collisions. The measurement was performed up to a transverse momentum (p T ) of 36 or 50 GeV/c depending on the D meson species and the centrality interval. For the first time in Pb–Pb collisions at the LHC, the yield of D 0 mesons was measured down to p T = 0, which allowed a model-independent determination of the p T -integrated yield per unit of rapidity (dN/dy). A maximum suppression by a factor 5 and 2.5 was observed with the nuclear modification factor (R AA ) of prompt D mesons at p T = 6–8 GeV/c for the 0–10% and 30–50% centrality classes, respectively. The D-meson RAA is compared with that of charged pions, charged hadrons, and J/ψ mesons as well as with theoretical predictions. The analysis of the agreement between the measured R AA , elliptic (v 2 ) and triangular (v 3 ) flow, and the model predictions allowed us to constrain the charm spatial diffusion coefficient D s . Furthermore the comparison of R AA and v 2 with different implementations of the same models provides an important insight into the role of radiative energy loss as well as charm quark recombination in the hadronisation mechanisms.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A measurement of the mean central optical depth of galaxy clusters via the pairwise kinematic Sunyaev-Zel&#x27;dovich effect with SPT-3G and DES

We infer the mean optical depth of a sample of optically-selected galaxy clusters from the Dark Energy Survey (DES) via the pairwise kinematic Sunyaev-Zel'dovich (kSZ) effect. The pairwise kSZ signal between pairs of clusters drawn from the DES Year-3 cluster catalog is detected at $4.1 \sigma$ in cosmic microwave background (CMB) temperature maps from two years of observations with the SPT-3G camera on the South Pole Telescope. After cuts, there are 24,580 clusters in the $\sim 1,400$ deg$^2$ of the southern sky observed by both experiments. We infer the mean optical depth of the cluster sample with two techniques. The optical depth inferred from the pairwise kSZ signal is $\bar{\tau}_e = (2.97 \pm 0.73) \times 10^{-3}$, while that inferred from the thermal SZ signal is $\bar{\tau}_e = (2.51 \pm 0.55) \times 10^{-3}$. The two measures agree at $0.6 \sigma$. We perform a suite of systematic checks to test the robustness of the analysis.

79 ASTRONOMY AND ASTROPHYSICS↗

Measurement of the mean central optical depth of galaxy clusters via the pairwise kinematic Sunyaev-Zel’dovich effect with SPT-3G and DES

Here, we infer the mean optical depth of a sample of optically selected galaxy clusters from the Dark Energy Survey via the pairwise kinematic Sunyaev-Zel'dovich (KSZ) effect. The pairwise KSZ signal between pairs of clusters drawn from the Dark Energy Survey Year-3 cluster catalog is detected at 4.1σ in cosmic microwave background temperature maps from two years of observations with the SPT-3G camera on the South Pole Telescope. After cuts, there are 24,580 clusters in the similar to ~1,400 deg 2 of the southern sky observed by both experiments. We infer the mean optical depth of the cluster sample with two techniques. The optical depth inferred from the pairwise KSZ signal is $\overline{τ}$ e = (2.97 ± 0.73) x 10 -3 , while that inferred from the thermal SZ signal is $\overline{τ}$ e = (2.51 ± 0.55 stat ± 0.15 syst ) x 10 -3 . The two measures agree at 0.6 sigma. We perform a suite of systematic checks to test the robustness of the analysis.

79 ASTRONOMY AND ASTROPHYSICS↗

Structural and stellar-population properties versus bulge types in Sloan Digital Sky Survey central galaxies

ABSTRACT This paper studies pseudo-bulges (P-bulges) and classical bulges (C-bulges) in Sloan Digital Sky Survey (SDSS) central galaxies using the new bulge indicator ΔΣ1, which measures relative central stellar-mass surface density within 1 kpc. We compare ΔΣ1 to the established bulge-type indicator Δ〈μe〉 from Gadotti (2009) and show that classifying by ΔΣ1 agrees well with Δ〈μe〉. ΔΣ1 requires no bulge–disc decomposition and can be measured on SDSS images out to z = 0.07. Bulge types using it are mapped on to 20 different structural and stellar-population properties for 12 000 SDSS central galaxies with masses 10.0 < log M*/M⊙ < 10.4. New trends emerge from this large sample. Structural parameters show fairly linear log–log relations versus ΔΣ1 and Δ〈μe〉 with only moderate scatter, while stellar-population parameters show a highly non-linear ‘elbow’ in which specific star formation rate remains roughly flat with increasing central density and then falls rapidly at the elbow, where galaxies begin to quench. P-bulges occupy the low-density end of the horizontal arm of the elbow and are universally star forming, while C-bulges occupy the elbow and the vertical branch and exhibit a wide range of star formation rates at a fixed density. The non-linear relation between central density and star formation rate has been seen before, but this mapping on to bulge class is new. The wide range of star formation rates in C-bulges helps to explain why bulge classifications using different parameters have sometimes disagreed in the past. The elbow-shaped relation between density and stellar indices suggests that central structure and stellar populations evolve at different rates as galaxies begin to quench.

Luo, Yifei↗

Multiplicity and net-electric charge fluctuations in central Ar+Sc interactions at 13 A , 19 A , 30 A , 40 A , 75 A , and 150 A GeV/c beam momenta measured by NA61/SHINE at the CERN SPS

This paper presents results on multiplicity fluctuations of positively and negatively charged hadrons as well as net-electric charge fluctuations measured in central Ar+Sc interactions at beam momenta 13 A , 19 A , 30 A , 40 A , 75 A , and 150 A GeV/c. The fluctuation analysis is one of the tools to search for the predicted critical point of strongly interacting matter. Results are corrected for the experimental biases and quantified using cumulant ratios. In most instances, multiplicity and net-charge distributions appear narrower than the corresponding Poisson or Skellam distributions. Cumulant ratios are compared with the EPOS1.99 model predictions, which provide a qualitative description that aligns with observations for positively and negatively charged particles. The obtained results are also compared to earlier NA61/SHINE results from inelastic p+p interactions in the same analysis acceptance.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Elastic depths for detecting shape anomalies in functional data

This this paper, we propose a new family of depth measures called the elastic depths that can be used to greatly improve shape anomaly detection in functional data. Shape anomalies are functions that have considerably different geometric forms or features from the rest of the data. Identifying them is generally more difficult than identifying magnitude anomalies because shape anomalies are often not distinguishable from the bulk of the data with visualization methods. The proposed elastic depths use the recently developed elastic distances to directly measure the centrality of functions in the amplitude and phase spaces. Measuring shape outlyingness in these spaces provides a rigorous quantification of shape which, in turn, gives the elastic depths a strong theoretical and practical advantage over other methods in detecting shape anomalies. A simple boxplot and thresholding method are introduced to identify shape anomalies using the elastic depths. We assess the elastic depth's detection skill on simulated shape outlier scenarios and compare them against popular shape anomaly detectors. Finally, bond yields, image outlines, and hurricane trajectories are used to demonstrate our method's applicability to functional data observed on three different manifolds.

97 MATHEMATICS AND COMPUTING↗

Semi-inclusive direct photon + jet and 𝜋 0 + jet correlations measured in 𝑝 + 𝑝 and central Au + Au collisions at $\sqrt{s_{NN}}$ = 200GeV

The STAR experiment at RHIC reports new measurements of jet quenching based on the semi- inclusive distribution of charged-particle jets recoiling from direct photon (γ dir ) and neutral pion (π 0 ) triggers in pp and central Au + Au collisions at $\sqrt{s_{NN}}$ = 200 GeV, for triggers in the range 9 < $E$$^{trig}_{T}$ < 20 GeV. The datasets have integrated luminosities of 3.9nb −1 for Au + Au and 23pb −1 for 𝑝𝑝 collisions. Jets are reconstructed using the anti-𝑘 𝑇 algorithm with resolution parameters 𝑅 = 0.2 and 0.5. The large uncorrelated jet background in central Au + Au collisions is corrected using a mixed-event approach, which enables precise charged-particle jet measurements at low transverse momentum 𝑝$^{ch}_{𝑇,jet}$ and large 𝑅. Recoil-jet distributions are reported in the range 𝑝$^{ch}_{𝑇,jet}$ < 25 GeV/𝑐. Comparison of the distributions measured in 𝑝𝑝 and Au + Au collisions reveals strong medium-induced jet yield suppression for 𝑅 = 0.2 with markedly less suppression for 𝑅 = 0.5. Comparison is also made to theoretical models incorporating jet quenching. Furthermore, these data provide new insight into the mechanisms underlying jet quenching and the angular dependence of medium-induced jet-energy transport and provide new constraints on modeling such effects.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Centrality dependence of Lévy-stable two-pion Bose-Einstein correlations in $\sqrt{𝑠{𝑁⁢𝑁}}$ = 200 GeV Au + Au collisions

The PHENIX experiment measured the centrality dependence of two-pion Bose-Einstein correlation functions in $\sqrt{𝑠{𝑁⁢𝑁}}$ = 200 GeV Au + Au collisions at the Relativistic Heavy Ion Collider at Brookhaven National Laboratory. The data are well represented by Lévy-stable source distributions. The extracted source parameters are the correlation-strength parameter 𝜆, the Lévy index of stability 𝛼, and the Lévy-scale parameter 𝑅 as a function of transverse mass 𝑚 𝑇 and centrality. The 𝜆⁡(𝑚 𝑇 ) parameter is constant at larger values of 𝑚 𝑇 , but decreases as 𝑚 𝑇 decreases. The Lévy-scale parameter 𝑅⁡(𝑚 𝑇 ) decreases with 𝑚 𝑇 and exhibits proportionality to the length scale of the nuclear overlap region. The Lévy exponent 𝛼⁡(𝑚 𝑇 ) is independent of 𝑚 𝑇 within uncertainties in each investigated centrality bin, but shows a clear centrality dependence. At all centralities, the Lévy exponent 𝛼 is significantly different from that of Gaussian (𝛼 = 2) or Cauchy (𝛼 = 1) source distributions. Comparisons to the predictions of Monte-Carlo simulations of resonance-decay chains show that, in all but the most peripheral centrality class (50%–60%), the obtained results are inconsistent with the measurements, unless a significant reduction of the in-medium mass of the 𝜂′ meson is included. Finally, in each centrality class, the best value of the in-medium 𝜂′ mass is compared to the mass of the 𝜂 meson, as well as to several theoretical predictions that consider restoration of U 𝐴⁢ (1) symmetry in hot hadronic matter.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗