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At least 37 records · Page 2

Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case

The Integrated Microbial Genomes and Microbiomes (IMG/M) system is a web-based platform that provides access to the wealth of public sequence data arising from diverse environments and enables the user to answer biological questions. In this review, we explore IMG’s tools and features using genome data for genus Deinococcus isolates as well as metagenome-assembled genomes (MAGs). Here, we use various comparative genomic and visualization tools to investigate this genus and address specific research questions.

59 BASIC BIOLOGICAL SCIENCES↗

Case Study of Integrating High-Temperature Heat Pump with LiBr-H2O Absorption Chiller for Data Center Liquid Cooling

Data centers (DCs) are physical infrastructures that support artificial intelligence workloads. The rapid growth of artificial intelligence is putting substantial pressure on the US power grid. Most of electricity consumed by IT equipment, accounting for 50%-60% of total DC power, ultimately becomes waste heat. This heat is dissipated by DC’s cooling facilities, accounting for an additional 30%-40% of total DC power. Recovering and repurposing this waste heat offers a significant opportunity to enhance energy efficiency and reduce operating costs of DCs. One potential pathway is converting heat to cold using thermal-driven absorption chillers, therefore, reducing the power consumption in DC cooling facilities. Existing studies mainly demonstrate the technical and economic feasibility of repurposing DC’s waste heat for cooling applications but provide limited technical details on how to integrate the thermal-driven absorption chillers with DC cooling systems. In addition, the low-grade waste heat available from DCs must be upgraded to higher temperatures suitable for absorption chillers. This paper presents a case study on integrating high-temperature heat pumps with a LiBr-H2O absorption chiller to use DC waste heat for cooling. A thermodynamic model of single-effect, LiBr-H2O absorption chiller and an empirical model of high-temperature heat pumps were built. The case study considers ASHRAE W17 liquid-cooled DC, with facility service water supplied at 17.0℃ and returned at 25.3℃. The thermal behaviors of absorption chiller components were predicted for the generation temperature ranging from 75.0℃ to 115.0℃. Based on the available waste heat in the integrated system, two waste heat recovery strategies were evaluated: a facility service water-based strategy and cooling water-based strategy. Results indicated that the cooling water-based strategy achieves higher Coefficient of Performance (COPs) than the facility service water-based strategy. The relatively low cooling COPs of single-effect LiBr-H2O absorption chillers could be offset by high heating COP of high temperature heat pumps. The maximum cooling COP of absorption chiller and the overall COP of integrated systems occur at lower generation temperatures, but these conditions also yield lower cooling capacities. In practice, system operation should balance the trade-off between the COP and cooling capacity

Wang, Pengtao [ORNL] (ORCID:0000000214713429)↗

Development of Time Lapse VSP Integration Workflow: A Case Study at Farnsworth CO2-EOR Project

Abstract This study aims to develop a 4D Vertical Seismic Profile (VSP) integration workflow to improve the prediction of subsurface stress changes. The selected study site is a 5-spot pattern within the ongoing CO2-EOR operations at the Farnsworth Field Unit FWU in Ochiltree County, Texas. The specific pattern has undergone extensive geological and geomechanical characterization through the acquisition of 3D seismic data, geophysical well logs, and core. This workflow constrains a numerical hydromechanical model by applying a penalty function formed between "modeled" versus "observed" time-lapse compressional and shear seismic velocity changes. Analyses of geophysical logs and ultra-sonic measurements on core exhibit measurable sensitivities to changes in both fluid saturation and mean effective stress. These data are used to develop a site-specific rock physics model and stress-velocity relationship, which inform the numerical models used to generate the "modeled" portion of the penalty function. The "observed" portion of the penalty function is provided by a novel elastic full-waveform inversion of the available 3D baseline and three monitor surveys to produce high-quality estimates of time-lapse compressional and shear seismic velocity changes. The modeling workflow accounts sequentially for fluid substitution and stress impacts. Hydrodynamic and geomechanical properties of the 3D coupled numerical model are estimated through geostatistical integration of well log and core data with 3D seismic inversion products. Changes in seismic velocities due to fluid substitution are computed using the Biot-Gassmann workflow and site-specific rock physics. Stress impacts on time-lapse seismic velocity changes are modeled from the effective stress output of the hydromechanical model and are initially based on the velocity versus effective stress relationship extracted from core mechanical testing. Based on the principle of superposition of seismic wavefields, seismic velocity changes attributed to fluid substitution and that due to changes in mean effective stress are treated as linearly additive. The modeled results are upscaled using Backus averaging to reconcile scale discrepancies between the modeled and measured datasets to formulate the penalty function. This manuscript presents the forward modeling process and concludes that for the base case, the seismic velocity changes due to mean effective stress dominates over the seismic velocity changes attributed to fluid substitution because of the extensive range of the pressure perturbations. Successful minimization of this penalty function calibrates the coupled hydrodynamic geomechanical numerical model and affirms the suitability of acoustic time-lapse measurements such as 4D-VSP for geomechanical calibration.

02 PETROLEUM↗

Massively Parallel Bayesian Model Calibration and Uncertainty Quantification with Applications to Nuclear Fuels and Materials

The U.S. Department of Energy (DOE)’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program aims to develop predictive capabilities by applying computational methods to the analysis and design of advanced reactor and fuel cycle systems. This program has been providing engineering-scale support for the development of BISON, a high-fidelity and high-resolution fuel performance tool. Fuel behavior in a nuclear reactor is governed by a complex network of mechanisms interacting with various other physics aspects in the reactor system. Any model developed to represent the fuel behavior will likely be idealized resulting in uncertainties in their predictions compared to the observed data. As such, this report was motivated by the need to identify the sources of uncertainties and quantify and propagate them through the fuel model outputs. Such quantification of uncertainties will establish a level of model trustworthiness, identify approaches to improve the model trustworthiness, and even guide optimal experiment design for maximal information gain. To accomplish the uncertainty quantification for computational models, this report has relied on the Bayesian framework which provides probabilistic treatment of models their inputs and outputs. The current state-of-the-art on performing Bayesian Uncertainty Quantification (UQ) for nuclear engineering models using High Performance Computing (HPC) resources have been reviewed. Implementation of capabilities for massively parallel Bayesian UQ in Multiphysics Object-Oriented Simulation Environment (MOOSE) is discussed. Several verification cases are discussed to verify the accuracy of the quantified uncertainties using the developed computational capabilities in MOOSE. Then, the problem of quantifying the uncertainties in TRI-Structural isOtropic (TRISO) fuel silver release is addressed. For the first time, the uncertainties arising from the TRISO Fission Gas Release (FGR) model due to model inadequacy and experimental noise are quantified. Also, the Bayesian capabilities are applied to the calibration of the MATPRO creep model, a widely used model in several fuel assessment cases. The impact of the prediction uncertainties in the MATPRO model on the fuel cladding behavior as part of the TRIBULATION assessment case (which is an integral effects case) is investigated. This report concludes with a discussion on the future work for the UQ for computational models.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Porting numerical integration codes from CUDA to oneAPI: a case study

We present our experience in porting optimized CUDA implementations to oneAPI. We focus on the use case of numerical integration, particularly the CUDA implementations of PAGANI and $m$-Cubes. We faced several challenges that caused performance degradation in the oneAPI ports. These include differences in utilized registers per thread, compiler optimizations, and mappings of CUDA library calls to oneAPI equivalents. After addressing those challenges, we tested both the PAGANI and m-Cubes integrators on numerous integrands of various characteristics. To evaluate the quality of the ports, we collected performance metrics of the CUDA and oneAPI implementations on the Nvidia V100 GPU. We found that the oneAPI ports often achieve comparable performance to the CUDA versions, and that they are at most 10% slower.

97 MATHEMATICS AND COMPUTING↗

Sensitivities of subgrid-scale physics schemes, meteorological forcing, and topographic radiation in atmosphere-through-bedrock integrated process models: a case study in the Upper Colorado River basin

Abstract. Mountain hydrology is controlled by interacting processes extending from the atmosphere through the bedrock. Integrated process models (IPMs), one of the main tools needed to interpret observations and refine conceptual models of the mountainous water cycle, require meteorological forcing that simulates the atmospheric process to predict hydroclimate then subsequently impacts surface–subsurface hydrology. Complex terrain and extreme spatial heterogeneity in mountainous environments drive uncertainty in several key considerations in IPM configurations and require further quantification and sensitivity analyses. Here, we present an IPM using the Weather Research and Forecasting (WRF) model which forces an integrated hydrologic model, ParFlow-CLM, implemented over a domain centered over the East River watershed (ERW), located in the Upper Colorado River basin (UCRB). The ERW is a heavily instrumented 300 km2 region in the headwaters of the UCRB near Crested Butte, CO, with a growing atmosphere-through-bedrock observation network. Through a series of experiments in the water year 2019 (WY19), we use four meteorological forcings derived from commonly used reanalysis datasets, three subgrid-scale physics scheme configurations in WRF, and two terrain shading options within WRF to test the relative importance of these experimental design choices for key hydrometeorological metrics including precipitation and snowpack, as well as evapotranspiration, groundwater storage, and discharge simulated by the ParFlow-CLM. Our hypothesis is that uncertainty from synoptic-scale forcings produces a much larger spread in surface–subsurface hydrologic fields than subgrid-scale physics scheme choice. Results reveal that the WRF subgrid-scale physics configuration leads to larger spatiotemporal variance in simulated hydrometeorological conditions, whereas variance across meteorological forcing with common subgrid-scale physics configurations is more spatiotemporally constrained. Despite reasonably simulating precipitation, a delay in simulated discharge peak is due to a systematic cold bias across WRF simulations, suggesting the need for bias correction. Discharge shows greater variance in response to the WRF simulations across subgrid-scale physics schemes (26 %) rather than meteorological forcing (6 %). The topographic radiation option has minor effects on the watershed-average hydrometeorological processes but adds profound spatial heterogeneity to local energy budgets (±30 W m−2 in shortwave radiation and 1 K air temperature differences in late summer). This is the first presentation of sensitivity analyses that provide support to help guide the scientific community to develop observational constraints on atmosphere-through-bedrock processes and their interactions.

54 ENVIRONMENTAL SCIENCES↗

Differentiating densities on smooth manifolds

Lebesgue integration of derivatives of strongly-oscillatory functions is a recurring challenge in computational science and engineering. Integration by parts is an effective remedy for huge computational costs associated with Monte Carlo integration schemes. In case of Lebesgue integrals over a smooth manifold, however, integration by parts gives rise to a derivative of the density implied by charts describing the domain manifold. This paper focuses on the computation of that derivative, which we call the density gradient function, on general smooth manifolds. We analytically derive formulas for the density gradient and present examples of manifolds determined by popular differential equation-driven systems. Furthermore, we highlight the significance of the density gradient by demonstrating a numerical example of Monte Carlo integration involving oscillatory integrands.

97 MATHEMATICS AND COMPUTING↗

Analysis of Carbon Capture Retrofits for Cement Plants

The objective of this study is to provide an estimate of the cost to capture CO 2 in retrofit applications at cement plants. The cement plant configurations considered in this study include natural gas and solid fuel (coal and coke) cases, and both wet- and dry kiln-fed plant designs, however the base cement plants in this study were not evaluated other than characterization of their kiln off-gas stream and high-level quantification of heat integration potential at the existing plant. In each case, the base cement plant produces 1.5 M tonnes per year of finished cement, assuming 91.4 percent clinker content. This analysis includes a 10 percent retrofit cost increase for process integration and low grade heat recovery, when compared to the analogous non-heat integration case. Heat integration is considered as a potential offset to capture system heating demands (i.e., as a percentage reduction). Recovery and reuse of excess heat from the base cement plant can provide economic benefits—primarily by reducing the need to purchase supplemental natural gas for CO 2 solvent regeneration—but any process improvement must be great enough to overcome the cost increases (i.e., capital and O&M) necessary to realize those benefits. With heat integration potential of 10 percent and 30 percent, that benefit wasn’t significant enough to offset the increase in capital and operating costs, and a cost of capture increase was observed based on the assumptions in this report. Benefits of heat integration potential may be realized when natural gas prices are higher, as demonstrated in the sensitivity to natural gas price where crossover points exist between heat integration cases and their respective non-heat integration cases. Four of the base cases were further evaluated to explore the cost implications of deeper levels of gas pre-treatment to remove oxides of nitrogen (NOx) and oxides of sulfur (SOx) from the kiln off-gas stream prior to CO 2 capture, purification, and compression. The results of these additional case analyses showed a 7.4–18.8 percent increase in cost of capture over the respective base case (i.e., analogous cases without SOx/NOx removal).

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Cyber-Informed Engineering Case Study of an Integrated Hydrogen Generation Plant

Strategies for securing digital instrumentation and control (I&C) systems within the nuclear industry are provided by multiple standards and guidance documents. However, since selection and use of security controls outlined in these documents are frequently only considered during or after installation, there are often limitations on their use, such as technological constraints related to design or operation. Furthermore, alternative controls intended to provide the same or similar security countermeasure as the primary control may also be infeasible at these stages, leaving the I&C system vulnerable to cyber-attacks. The limitations associated with ‘bolting on’ security controls late in the systems engineering lifecycle can be reduced by integrating Cyber-Informed Engineering (CIE) into the process. This paper evaluates the use of CIE during the high-level design stage of a hydrogen generation project where heat and electricity are provided by a nuclear power plant. Applying CIE to this project highlighted potential cyber vulnerabilities of the initial design, leading to recommendations for process flow and I&C system design modifications to reduce, and at times eliminate, the risk from both deliberate and unintentional cyber incidents.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

New candidates for regulated gene integrity revealed through precise mapping of integrative genetic elements

Abstract Integrative genetic elements (IGEs) are mobile multigene DNA units that integrate into and excise from host bacterial genomes. Each IGE usually targets a specific site within a conserved host gene, integrating in a manner that preserves target gene function. However, a small number of bacterial genes are known to be inactivated upon IGE integration and reactivated upon excision, regulating phenotypes of virulence, mutation rate, and terminal differentiation in multicellular bacteria. The list of regulated gene integrity (RGI) cases has been slow-growing because IGEs have been challenging to precisely and comprehensively locate in genomes. We present software (TIGER) that maps IGEs with unprecedented precision and without attB site bias. TIGER uses a comparative genomic, ping-pong BLAST approach, based on the principle that the IGE integration module (i.e. its int-attP region) is cohesive. The resultant IGEs from 2168 genomes, along with integrase phylogenetic analysis and gene inactivation tests, revealed 19 new cases of genes whose integrity is regulated by IGEs (including dut, eccCa1, gntT, hrpB, merA, ompN, prkA, tqsA, traG, yifB, yfaT and ynfE), as well as recovering previously known cases (in sigK, spsM, comK, mlrA and hlb genes). It also recovered known clades of site-promiscuous integrases and identified possible new ones.

59 BASIC BIOLOGICAL SCIENCES↗

Investigation of Cycling Coal-Fired Power Plants Using High-Fidelity Models

The project delivers a well-integrated and validated simulation platform for cycling operation analysis in coal-fired power plant. Two critical mechanical components of the boiler island were analyzed through mechanical integrity assessment and economic benefit analysis. The current phase of the project focuses on the development of the integrated simulation infrastructure and prove its feasibility and effectiveness using two typical use cases. This integrated platform can help save a lot of engineering efforts for model development and simulation analysis. Through the real simulation scenarios in this document, it was demonstrated that using this platform, an analysis can be completed in approximately 2 days, while it could cost several weeks before using this platform. Going forward, the platform built in this project can be used for more boiler service applications, and it can be further enhanced with more functions/features to maximize its usage and benefits. 1) Extend component-level analysis with more use cases to cover all the major critical components of boiler island under cycling operations. A library of critical components can be developed and validated for typical pulverized coal-fired subcritical boiler units. 2) Develop predictive maintenance features based on the integrated models (Digital Twins) and engineering analysis procedures. Predictive maintenance enables each asset to be serviced based on forecast on life consumption and cost profile for replacing/welding the critical mechanical parts of the boiler. This minimizes the chance of unscheduled shutdowns and emergency services at much higher costs and prevent the fatal accidents in unit operations. 3) Develop and maintain a standard library for critical component analysis under flexible plant operations, which will include libraries of: process models, MI models for typical pressure parts, and economic models with typical plant operating data and ISO power trade data.

01 COAL, LIGNITE, AND PEAT↗

Long term performance of vacuum insulation panels integrated into building components

Vacuum insulation panels provide much greater resistance to heat transfer than conventional insulation materials, making them ideal for building applications, especially where space is a constraint. Of particular interest is energy retrofits where high insulation values are required with very little or no modifications to existing building envelope elements such as fenestrations and service penetrations. To facilitate the use of vacuum insulation panels (VIPs) in residential and commercial construction, this study investigates the performance of VIPs integrated into polyisocyanurate foam board and vinyl siding after several years of service. Vacuum insulation panels integrated with polyisocyanurate boards were studied in mixed humid and cold climates. The integration of VIPs with vinyl siding was investigated in a mixed humid climate. Periods of service were between two and five years. In all cases, the integrated building components outperformed conventional materials by almost 40 percent during heating and cooling periods. However, the percent reduction in heat gains and losses of the integrated building components decreased with time at a rate between approximately 4% and 10% per year during the service period. In some cases, the rate seems to converge to a steady -state value. Measurements are ongoing to determine if a steady-state value is attained or the panel's insulation value continues to decrease with time. This study is critical in addressing the service life and durability of the building envelope with VIP integrated building components. The effect of these changes will be reviewed in the context of an exterior retrofit.

Aldykiewicz Jr, Antonio↗

Engineering-Scale Integrated Energy System Data Projection Demonstration via the Dynamic Energy Transport and Integration Laboratory

The objective of this study is to demonstrate and validate the Dynamic Energy Transport and Integration Laboratory (DETAIL) preliminary scaling analysis using Modelica language system-code Dymola. The DETAIL preliminary scaling analysis includes a multisystem integral scaling package between thermal-storage and hydrogen-electrolysis systems. To construct the system of scaled equations, dynamical system scaling (DSS) was applied to all governing laws and closure relations associated with the selected integral system. The existing Dymola thermal-energy distribution system (TEDS) facility and high-temperature steam electrolysis (HTSE) facility models in the Idaho National Laboratory HYBRID repository were used to simulate a test case and a corresponding scaled case for integrated system HYBRID demonstration and validation. The DSS projected data based on the test-case simulations and determined scaling ratios were generated and compared with scaled case simulations. The preliminary scaling analysis performance was evaluated, and scaling distortions were investigated based on data magnitude, sequence, and similarity. The results indicated a necessity to change the normalization method for thermal storage generating optimal operating conditions of 261 kW power and mass flow rate of 6.42 kg/s and the possibility of reselecting governing laws for hydrogen electrolysis to improve scaling predictive properties. To enhance system-scaling similarity for TEDS and HTSE, the requirement for scaling validation via physical-facility demonstration was identified.

08 HYDROGEN↗