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At least 37 records · Page 2

The Neurodata Without Borders ecosystem for neurophysiological data science

The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, and reusable (FAIR). This requires a standard language for data and metadata that can coevolve with neuroscience. We describe design and implementation principles for a language for neurophysiology data. Our open-source software (Neurodata Without Borders, NWB) defines and modularizes the interdependent, yet separable, components of a data language. We demonstrate NWB’s impact through unified description of neurophysiology data across diverse modalities and species. NWB exists in an ecosystem, which includes data management, analysis, visualization, and archive tools. Thus, the NWB data language enables reproduction, interchange, and reuse of diverse neurophysiology data. More broadly, the design principles of NWB are generally applicable to enhance discovery across biology through data FAIRness.

59 BASIC BIOLOGICAL SCIENCES↗

Biaxial load effects on the crack border elastic strain energy and strain energy rate

The validity of the singular solution (first term of a series representation) is investigated for the crack tip stress and displacement field in an infinite sheet with a flat line crack with biaxial loads applied to the outer boundaries. It is shown that if one retains the second contribution to the series approximations for stress and displacement in the calculation of the local elastic strain energy density and elastic strain energy rate in the crack border region, both these quantities have significant biaxial load dependency. The value of the J-integral does not depend on the presence of the second term of the series expansion for stress and displacement. Thus J(I) is insensitive to the presence of loads applied parallel to the plane of the crack.

Eftis, J.↗

High spatial resolution telescopic multispectral imaging and spectroscopy of the Moon. 1: The Serenitatis/Tranquillitatis border region

The region of the moon near the border between Mare Serenitatis and Mare Tranquillitatis is one of the most geologically and compositionally complex areas of the nearside. The geologic history of this region has been shaped by impacts of widely-varying spatial scale and temporal occurrence, by volcanism of variable style and composition with time, and by limited tectonism. We have been studying this region as part of a larger multi remote sensing technique effort to understand the composition, morphology, geology, and stratigraphy of the moon at spatial scales of 2 km or less. The effort has been aided by the proximity of this area to the Apollo 11, 15, and 17 landing sites and by the occurrence of one of the primary lunar spectroscopic 'standard areas' within our scene (MS2). Here, some of the findings from the multispectral imaging and spectroscopy part of this effort are reported.

Bell, James F., III↗

Three-dimensional segmentation of luminal and adventitial borders in serial intravascular ultrasound images

Intravascular ultrasound (IVUS) provides exact anatomy of arteries, allowing accurate quantitative analysis. Automated segmentation of IVUS images is a prerequisite for routine quantitative analyses. We present a new three-dimensional (3D) segmentation technique, called active surface segmentation, which detects luminal and adventitial borders in IVUS pullback examinations of coronary arteries. The technique was validated against expert tracings by computing correlation coefficients (range 0.83-0.97) and William's index values (range 0.37-0.66). The technique was statistically accurate, robust to image artifacts, and capable of segmenting a large number of images rapidly. Active surface segmentation enabled geometrically accurate 3D reconstruction and visualization of coronary arteries and volumetric measurements.

NASA Discipline Cardiopulmonary↗

Southern Bhutan Ecological Forecasting Tech Paper: Modeling Asian Elephant (Elephas maximus) Habitat Suitability along the Southern Bhutan Border with NASA Earth Observations

Asian elephants (Elephas maximus) are a flagship species essential for the functioning of forest ecosystems, and they also have cultural significance in Bhutan. Elephants receive the highest legal protection as listed under Schedule I of the Bhutan Forests and Nature Conservation Act, 1995. Yet, they face threats of extinction due to poaching for ivory as well as the loss and fragmentation of their habitat. Due to the recent clearing of forests and the growing populations in these areas, there has been an increase in incidents of human-elephant conflict. These conflicts have been detrimental to farmer’s annual harvests and livelihoods and have led to retaliatory killing and injury of elephants in southern Bhutan. The DEVELOP Southern Bhutan Ecological Forecasting team partnered with the Bhutan Foundation and Bhutan Tiger Center to help address this problem. The team integrated NASA Earth observations, including Landsat 5 Thematic Mapper (TM), Landsat 8 Operational Land Imager (OLI), Terra Moderate Resolution Imaging Spectroradiometer (MODIS), and the Shuttle Radar Topography Mission (SRTM) to acquire information on land cover change and elephant habitat suitability along the southern border of Bhutan. The team utilized Esri ArcGIS Pro and Software for Assisted Habitat Modeling (SAHM) for data analysis, modeling, and visualization. The team used elephant occurrence data and environmental variables to model current habitat suitability for migrating elephant populations. This analysis provided partners with maps to inform decisions about the placement and conservation of elephant corridors and helped build their capacity to use satellite data for future studies and project planning.

Palchen Wangchuk↗

Southern Bhutan Ecological Forecasting Project Summary - Modeling Asian Elephant (Elephas Maximus) Habitat Suitability along the Southern Bhutan Border with NASA Earth Observations

Asian elephants (Elephas maximus) are a flagship species essential for the functioning of forest ecosystems, and they also have cultural significance in Bhutan. Elephants receive the highest legal protection as listed under Schedule I of the Bhutan Forests and Nature Conservation Act, 1995. Yet, they face threats of extinction due to poaching for ivory as well as the loss and fragmentation of their habitat. Due to the recent clearing of forests and the growing populations in these areas, there has been an increase in incidents of human-elephant conflict. These conflicts have been detrimental to farmer’s annual harvests and livelihoods and have led to retaliatory killing and injury of elephants in southern Bhutan. The DEVELOP Southern Bhutan Ecological Forecasting team partnered with the Bhutan Foundation and Bhutan Tiger Center to help address this problem. The team integrated NASA Earth observations, including Landsat 5 Thematic Mapper (TM), Landsat 8 Operational Land Imager (OLI), Terra Moderate Resolution Imaging Spectroradiometer (MODIS), and the Shuttle Radar Topography Mission (SRTM) to acquire information on land cover change and elephant habitat suitability along the southern border of Bhutan. The team utilized Esri ArcGIS Pro and Software for Assisted Habitat Modeling (SAHM) for data analysis, modeling, and visualization. The team used elephant occurrence data and environmental variables to model current habitat suitability for migrating elephant populations. This analysis provided partners with maps to inform decisions about the placement and conservation of elephant corridors and helped build their capacity to use satellite data for future studies and project planning.

DEVELOP Project Summary↗

Coronado Ecological Conservation: Assessing Vegetation Change Due to Border Wall Construction and Shifting Social Trails

We are the Coronado Ecological Conservation team at the GA, Athens Node. We have been Utilizing NASA Earth observations to assess invasive species spread and change in vegetation health in southeastern Arizona due to the construction of the US-Mexico border wall. The NPS at Coronado National Memorial will use our end products to bolster their plans and funding requests for restoration work in the disturbed areas.

Carson Schuetze↗

Coronado Ecological Conservation: Assessing Vegetation Change Due to Border Wall Construction and Shifting Social Trails

Species monitoring is essential in mitigating the impacts of plant invasion, such as radical changes in an area’s ecosystem, degraded soil health, increased wildfire severity, landslides, and increased flooding. NASA DEVELOP partnered with the National Park Service (NPS) to investigate invasive species in disturbed lands: specifically, areas affected by off-trail walking and US-Mexico border construction activities. The team assessed how construction has impacted the distribution of Lehmann’s lovegrass and Russian thistle invasives throughout Coronado National Memorial, AZ from 1986 to 2022. Using data from Landsat 5 and 8, Sentinel-2, the National Agriculture Imagery Program, and PlanetScope, the team computed vegetation indices including the Normalized Difference Vegetation Index, Normalized Difference Moisture Index, Modified Soil Adjusted Vegetation Index 2, Enhanced Vegetation Index, and Tasseled Cap Wetness, Brightness, and Greenness transformations as vegetation health indicators to input into various machine learning algorithms. To minimize noise, the team conducted Principal Component Analysis on the vegetation indices and spectral bands before running k-means++ clustering and random forest classification algorithms. Between all datasets, we found the median area fully overtaken by invasive plants was 5.37% of the park’s total area in 2022. The NPS will use the end products to help increase restoration efforts in disturbed areas with high concentrations of invasive plants. The NPS’s collection of ground data for 2022–2023, in conjunction with future data collection, will notably improve the accuracy of classification models, leading to more precise monitoring of invasive spread over time.

Carson Schuetze↗

Detecting Low-level Radiation Sources Using Border Monitoring Gamma Sensors

We consider a problem of detecting a low-level radiation source using a network of Gamma spectral sensors placed on the periphery of a monitored region. We propose a computationally light-weight, correlation-based method which is primarily intended for systems with limited computing capacity. Sensor measurements are combined at the fusion by first generating decisions at each time step and then taking their majority vote within a time widow. At each time step, decisions are generated using two strategies: (i) SUM method based on a threshold decision on a correlation statistic derived from measurements from all sensors, and (ii) OR method based on logical-OR of threshold decisions based on correlations statistics of individual sensor measurements. We derive analytical performance bounds for false alarm rates of SUM and OR methods, and show that their performance is enhanced by the temporal smoothing of majority vote within a time window. Using measurements from a test campaign, we generate a border monitoring scenario with twelve 2"x2" NaI Gamma sensors deployed on the periphery of 42m x 42m outdoor region. A Cs-137 source is moved in a straight-line across this region, starting several meters outside and finally moving away from it. We illustrate the performance of both correlation-based detection methods, and compare their performances with each other and with a particle filter method. Overall, under small false-alarm conditions, the OR fusion is found to produce better detection performance.

Sen, Satyabrata↗

Charge radii and electromagnetic moments of 214−218 Bi : Exploring the “southern” border of the 𝑍 > 82 octupole-deformation region

The changes in the mean-squared charge radii relative to 209 Bi 126 (𝛿⁢⟨𝑟 2 ⟩ 𝑁,126 ) and the magnetic dipole and electric quadrupole moments in 214−218 Bi have been measured using the in-source resonance-ionization spectroscopy technique at ISOLDE (CERN). Magnetic moments of odd-odd bismuth nuclei have been analyzed by the additivity relation. Previous tentative spin-parity and configuration assignments based on the 𝛽-decay feeding patterns have been supported. A normal odd-even staggering in charge radii of bismuth isotopes with 𝑁>126 has been observed. The new data for the 𝛿⁡⟨𝑟 2 ⟩ of bismuth isotopes allow a study of the isotonic dependencies in the charge radii, revealing jumps in 𝛿⁢⟨𝑟 2 ⟩ 132,126 and 𝛿⁢⟨𝑟 2 ⟩ 134,126 at 𝑍 = 84. This pattern could be explained by a sudden onset of octupole deformation at 𝑁 = 132 and 134 when going from polonium (𝑍 = 84) to astatine (𝑍 = 85).

fundamental symmetries↗

The Eco-Bio-Social Factors That Modulate Aedes aegypti Abundance in South Texas Border Communities

Aedes aegypti control requires dedicated resources that are usually scarce, limiting the reach and sustainability of vector control programs. This generates a need to focus on areas at risk of disease transmission and also understand the factors that might modulate local mosquito abundance. We evaluated the eco-bio-social factors that modulate indoor and outdoor relative abundance of female Ae. aegypti in communities of South Texas. We conducted housing quality and Knowledge Attitudes and Practices surveys in households that were part of a weekly mosquito surveillance program in November of 2017 and 2018. Our results showed widespread knowledge of mosquitoes and Zika virus by our participants. However, less than 35% considered them as serious problems in this region. The presence of window-mounted air conditioning units increased the risk of female mosquito relative abundance indoors. An increase in outdoor relative abundance was associated with larger properties and a higher number of children between 6 to 17 years of age. Interestingly, we observed that an increasing number of children <5 years of age modulated both indoor and outdoor relative abundance, with a 52% increase indoors and 30% decrease outdoors. The low perception of mosquito and disease risk highlights engagement needs for vector-borne disease prevention in this region. The identified risk factors can help guide public health officials in their efforts to reduce human and vector contact.

54 ENVIRONMENTAL SCIENCES↗

Lensing Without Borders: Measurements of galaxy-galaxy lensing and projected galaxy clustering in DESI DR1

We present Galaxy-Galaxy Lensing measurements obtained by cross-correlating spectroscopically observed galaxies from the first data release of the Dark Energy Spectroscopic Instrument (DESI) with source galaxies from the Hyper Suprime-Cam Subaru Strategic Survey, the Kilo-Degree Survey, the Sloan Digital Sky Survey, and the Dark Energy Survey. Specifically, we measure the excess surface mass density $ΔΣ$ and tangential shear $γ_\mathrm{t}$ for the Bright Galaxy Sample and Luminous Red Galaxies measured within the first year of observations with DESI. To ensure robustness, we test the measurements for systematic biases, finding no significant trends related to the properties of the \acrshort{desi} lens galaxies. We identify a significant trend with the average redshift of source galaxies, however, this trend vanishes once we apply shifts to the Hyper Suprime-Cam Subaru Strategic Survey redshift distributions that are also favored by their fiducial cosmology analysis. Additionally, we compare the observed scatter in the measurements with the theoretical covariance and find excess scatter, driven primarily by small-scale measurements of $r\leq 1 \, \mathrm{Mpc}/h$; measurements on larger scales are consistent at the $2\,σ$ level. We further present the projected clustering measurements $w_p$ of the galaxy samples in the the first data release of DESI. These measurements, which will be made publicly available, serve as a foundation for forthcoming cosmological analyses.

Heydenreich, S. [Lick Observ.] (ORCID:000000027273↗