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At least 37 records · Page 2

Microbial Enrichments Contribute to Characterization Of Desert Tortoise Gut Microbiota

Abstract Desert tortoises play ecologically significant roles, including plant seed dispersal and mineral cycling, and yet little is known about microbial members that are critical to their gut and overall health. Tortoises consume recalcitrant plant material, which their gut microbiota degrades and converts into usable metabolites and nutrients for the tortoise. Findings from tortoise gut microbiomes may translate well into biotechnological applications as these microbes have evolved to efficiently degrade recalcitrant substrates and generate useful products. In this study, we cultivated microbial communities from desert tortoise fecal samples following a targeted anaerobic enrichment for microbes involved in deconstruction and utilization of plant biomass. We employed 16S rRNA amplicon sequencing to compare cultivated communities to initial fecal source material and found high abundances of Firmicutes and Bacteroidota typically associated with biomass deconstruction in all cultivated samples. Significantly decreased microbial diversity was observed in the cultivated microbial communities, yet several key taxa thrived in lignocellulose enrichments, includingLachnospiraceaeandEnterococcus. Additionally, cultivated communities produced short-chain fatty acids under anaerobic conditions, and their growth and metabolic output provide evidence of their viability in the initial fecal communities. Overall, this study adds to the limited understanding of reptilian herbivore microbiota, and offers a path towards biotechnological translation based on the ability of the cultivated communities to convert lignocellulose directly to acetate, propionate, and butyrate.

Environmental Sciences & Ecology

Use of near infrared/red radiance ratios for estimating vegetation biomass and physiological status

The application of photographic infrared/red (ir/red) reflectance or radiance ratios for the estimation of vegetation biomass and physiological status were investigated by analyzing in situ spectral reflectance data from experimental grass plots. Canopy biological samples were taken for total wet biomass, total dry biomass, leaf water content, dry green biomass, dry brown biomass, and total chlorophyll content at each sampling date. Integrated red and photographic infrared radiances were regressed against the various canopy or plot variables to determine the relative significance between the red, photographic infrared, and the ir/red ratio and the canopy variables. The ir/red ratio is sensitive to the photosynthetically active or green biomass, the rate of primary production, and actually measures the interaction between the green biomass and the rate of primary production within a given species type. The ir/red ratio resulted in improved regression significance over the red or the ir/radiances taken separately. Only slight differences were found between ir/red ratio, the ir-red difference, the vegetation index, and the transformed vegetation index. The asymptotic spectral radiance properties of the ir, red, ir/red ratio, and the various transformations were evaluated.

Tucker, C. J.

From pixels to patterns: Coupling Optical Coherence Tomography and machine learning for monitoring coastal wetland root systems

Coastal wetlands are crucial in shoreline stabilization, carbon sequestration, and storm protection. Yet, due to limitations in traditional destructive sampling techniques, the belowground biomass (live root mass) and necromass (dead and decaying roots) remain difficult to assess in coastal wetlands, limiting our understanding on coastal resilience, nutrient cycling, and soil structure. This study employs Optical Coherence Tomography (OCT) as a high-resolution imaging technique to analyze root biomass and necromass in the Terrebonne Basin, Louisiana. A Random Forest (RF) model was developed to classify root health states based on OCT-derived features, achieving an accuracy of 70% in distinguishing live from dead root segments. The results demonstrate that OCT, combined with ML, offers a promising novel approach to root analysis, providing fine-scale insights into root morphology and decay patterns that are not easily captured by conventional methods. This research lays the foundation for future integration of OCT with complementary imaging modalities such as X-ray Computed Tomography (XCT) and advanced ML algorithms to enhance classification accuracy and scalability. Future work aims to expand the dataset diversity across different wetland types and apply the methodology for large-scale, repeatable assessments of root biomass turnover and accumulation, with important implications for wetland monitoring, conservation, and restoration under changing environmental conditions.

AI/ML

Measurement of chlorophyll a fluorescence with an airborne fluorosensor

Phytoplankton biomass and diversity among various algal species are important for marine productivity assessments. The spatial heterogeneity of phytoplankton in coastal and estuarine environments complicates estimates of total biomass using conventional surface sampling techniques. Since synoptic or near-synoptic data can be quite useful in these studies, this area is a natural focal point for development of remote sensors. However, it is very difficult to sense phytoplankton density and diversity with spacecraft-borne passive sensors primarily because modulation in the signal due to phytoplankton is of the same order as that of atmospheric effects. The same sensors mounted on aircraft may be able to detect and quantify high concentrations of phytoplankton (blooms), but the current lack of knowledge about the spectral reflectance signatures of the major phytoplankton color groups rules out any diversity measurements by this type of sensor. An active fluorosensor mounted on a low-flying aircraft or helicopter is not limited by any of these constraints. A brief survey of the four currently active systems is presented.

Jarrett, O., Jr.

Enhancement of acidic gases in biomass burning impacted air masses over Canada

Biomass-burning impacted air masses sampled over central and eastern Canada during the summer of 1990 as part of ABLE 3B contained enhanced mixing ratios of gaseous HNO3, HCOOH, CH3COOH, and what appears to be (COOH)2. These aircraft-based samples were collected from a variety of fresh burning plumes and more aged haze layers from different source regions. Values of the enhancement factor, delta X/delta CO, where X represents an acidic gas, for combustion-impacted air masses sampled both near and farther away from the fires, were relatively uniform. However, comparison of carboxylic acid emission ratios measured in laboratory fires to field plume enhancement factors indicates significant in-plume production of HCOOH. Biomass-burning appears to be an important source of HNO3, HCOOH, and CH3COOH to the troposphere over subarctic Canada.

Lefer, B. L.

Effect of Biomass Water Dynamics in Cosmic-Ray Neutron Sensor Observations: A Long-Term Analysis of Maize–Soybean Rotation in Nebraska

Precise soil water content (SWC) measurement is crucial for effective water resource management. This study utilizes the Cosmic-Ray Neutron Sensor (CRNS) for area-averaged SWC measurements, emphasizing the need to consider all hydrogen sources, including time-variable plant biomass and water content. Near Mead, Nebraska, three field sites (CSP1, CSP2, and CSP3) growing a maize–soybean rotation were monitored for 5 (CSP1 and CSP2) and 13 (CSP3) years. Data collection included destructive biomass water equivalent (BWE) biweekly sampling, epithermal neutron counts, atmospheric meteorological variables, and point-scale SWC from a sparse time domain reflectometry (TDR) network (four locations and five depths). In 2023, dense gravimetric SWC surveys were collected eight (CSP1 and CSP2) and nine (CSP3) times over the growing season (April to October). The N0 parameter exhibited a linear relationship with BWE, suggesting that a straightforward vegetation correction factor may be suitable (fb). Results from the 2023 gravimetric surveys and long-term TDR data indicated a neutron count rate reduction of about 1% for every 1 kg m−2 (or mm of water) increase in BWE. This reduction factor aligns with existing shorter-term row crop studies but nearly doubles the value previously reported for forests. This long-term study contributes insights into the vegetation correction factor for CRNS, helping resolve a long-standing issue within the CRNS community.

Chemistry

Microwave remote sensing of soil moisture content over bare and vegetated fields

The author has identified the following significant results. Ground truth of soil moisture content, and ambient air and soil temperatures were acquired concurrently with measurements of soil moisture in bare fields and fields covered with grass, corn, and soybeans obtained with 1.4 GHz and 5 GHz radiometers mounted on a truck. The biomass of the vegetation was sampled about once a week. The measured brightness temperatures over the bare fields were compared with those of radiative transfer model calculations using as inputs the acquired soil moisture and temperatures data with appropriate values of dielectric constants for soil-water mixtures. A good agreement was found between the calculated and measured results over 10 deg to 70 deg incident angles. The presence of vegetation reduced the sensitivity of soil moisture sensing. At 1.4 GHz the sensitivity reduction ranged from about 20% for 10 cm tall grassland cover to over 50 to 60% for the dense soybean field. At 5 GHz corresponding reduction in sensitivity ranged from approximately 70% to approximately 90%.

Wang, J. R.

Microwave remote sensing of soil moisture content over bare and vegetated fields

Remote measurements of soil moisture contents over bare fields and fields covered with orchard grass, corn, and soybean were made during October 1979 with 1.4 GHz and 5 GHz microwave radiometers mounted on a truck. Ground truth of soil moisture content, ambient air, and soil temperatures was acquired concurrently with the radiometric measurements. The biomass of the vegetation was sampled about once a week. The measured brightness temperatures over bare fields were compared with those of radiative transfer model calculations using as inputs the acquired soil moisture and temperature data with appropriate values of dielectric constants for soil-water mixtures. Good agreement was found between the calculated and the measured results over 10-70 deg incident angles. The presence of vegetation was found to reduce the sensitivity of soil moisture sensing. At 1.4 GHz the sensitivity reduction ranged from approximately 20% for 10-cm tall grassland to over 60% for the dense soybean field. At 5 GHz the corresponding reduction in sensitivity ranged from approximately 70 to approximately 90%.

Wang, J. R.

Trace gas emissions from a mid-latitude prescribed chaparral fire

Smoke-plume gas samples were collected at altitudes from 35-670 m above the ground over the San Dimas Experimental Forest during a 400-acre prescribed chaparral fire. Mean emission ratios relative to CO2 for CO, H2, CH4, and total nonmethane hydrocarbons were lower than previous values obtained for large biomass-burning field experiments. Comparison of samples from vigorously flaming and mixed stages of combustion revealed little differences in CO2 normalized emission ratios for these gases (except for N2O).

Cofer, Wesley R., III

Long-term remote monitoring of salt marsh biomass

Methods developed for monitoring salt-marsh biomass remotedly are considered in the framework of NASA's Biospheric Research Program. Satellite-derived estimates of the aboveground biomass is considered, and it is noted that a long-term program for long-term remote monitoring is only practical if the relationship between biomass and spectral data remains essentially constant from year to year. Emphasis is placed on ground-based sampling, satellite measurements of mean marsh live aboveground biomass, the spatial distribution of biomass within the marsh, and changes in marsh hydrography as seen from a satellite. Linking aboveground and belowground biomass is discussed, as well as the problem with obtaining cloud-free images and measuring dead biomass.

Gross, M. F.

New estimates of nitrous oxide emissions from biomass burning

The recent discovery of an artifact producing increased levels of N2O in combustion gas samples collected and stored in grab bottles before chemical analysis has resulted in the downgrading of fossil-fuel combustion and the questioning of biomass burning as important sources of N2O. As almost all reported analyses of N2O produced from biomass burning have involved essentially the same collection and analysis protocols as used in the fossil-fuel studies, this source of N2O must also be reexamined. Here, measurements of N2O made over a large prescribed fire using a near real-time in situ measurement technique are reported and compared with measurements of N2O from simultaneously collected grab-bottle samples. The results from 27 small laboratory biomass test fires are also used to help clarify the validity of earlier assessments. It is concluded that biomass burning contributes about seven percent of atmospheric N2O, as opposed to earlier estimates of several times this value.

Cofer, W. R., III

UCB-GLOBES: An open-access mass spectral database of identified and unidentified atmospheric organic compounds

Chemical characterization of atmospheric organic aerosols using gas chromatography with 70 eV electron ionization mass spectrometry (GC/EI-MS) has been used for decades in advancing molecular marker detection and identification, though primarily through suspect screening and/or targeted analyses. To advance non-targeted analyses of environmental samples, we have catalogued approximately 27 000 mass spectra (MS) of the trimethylsilyl derivatives of semi-volatile organic aerosol (OA) analytes in the open-access University of California Berkeley Goldstein Library of Organic Biogenic Environmental Spectra (UCB-GLOBES). Analytes were observed in ambient samples from the U.S. and the Central Amazon and/or laboratory simulations of secondary OA (SOA) formation. These samples are representative of OA under urban and biomass burning influences as well as SOA derived from biogenic precursors (e.g., isoprene, monoterpenes, sesquiterpenes) and biomass burning intermediates. MS are documented in UCB-GLOBES without regard to known chemical identity, annotated with extensive metadata such as sample source/experimental conditions, any structural information gained from MS analyses, and predicted chemical properties such as average carbon oxidation state and carbon number. UCB-GLOBES MS are compatible for importing into the NIST MS Search program, and we have also provided a Jupyter Notebook for MS visualization and comparisons. We demonstrate the utility of UCB-GLOBES through MS reanalyses of prior analytes observed in ambient data, finding a 20 % reduction in the number of analytes assigned to OA source categories reliant solely on time series correlation and an overall 11 % increase in new MS-based OA source categorization for the Southeast U.S. For 1513 analytes observed previously in the Central Amazon, we found 375 MS matches using UCB-GLOBES vs. 136 MS matches during prior analyses, representing a 14 % gain in newly confirmed or newly categorized OA species. While OA from laboratory oxidation experiments in UCB-GLOBES are highly diverse chemically, on average only 29 % of UCB-GLOBES MS have a mass spectral match to another MS entry in UCB-GLOBES and/or in databases of known compounds (i.e. NIST MS Database, Adams Essential Oil, MANE Flavor and Fragrance Company). This indicates that roughly 70 % of UCB-GLOBES MS are unique thus far, not observed more than once among the laboratory oxidation samples and ambient data in UCB-GLOBES MS. Further, only 18 % can be positively identified using these databases or known authentic standards. This points to a large gap between these laboratory simulations and ambient OA. Overall, the UCB-GLOBES database can be utilized for improving confidence in OA source categorization and/or identification, novel chemical marker discovery, tracking chemical diversity, de novo structure and properties prediction, and improving MS search and matching algorithms. This can ultimately inform future research priorities for the chemical characterization of atmospheric organic samples.

Mass spectrometry

A multi-frequency radiometric measurement of soil moisture content over bare and vegetated fields

A USDA Beltsville Agricultural Research Center site was used for an experiment in which soil moisture remote sensing over bare, grass, and alfalfa fields was conducted over a three-month period using 0.6 GHz, 1.4 GHz, and 10.6 GHz Dicke-type microwave radiometers mounted on mobile towers. Ground truth soil moisture content and ambient air and sil temperatures were obtained concurrently with the radiometric measurements. Biomass of the vegetation cover was sampled about once a week. Soil density for each of the three fields was measured several times during the course of the experiment. Results of the radiometric masurements confirm the frequency dependence of moisture sensing sensitivity reduction reported earlier. Observations over the bare, wet field show that the measured brightness temperature is lowest at 5.0 GHz and highest of 0.6 GHz frequency, a result contrary to expectation based on the estimated dielectric permittivity of soil water mixtures and current radiative transfer model in that frequency range.

Wang, J. R.

Completing below-ground carbon budgets for pastures, recovering forests, and mature forests of Amazonia

The objective of this grant was to complete below-ground carbon budgets for pastures and forest soils in the Amazon. Profiles of radon and carbon dioxide were used to estimate depth distribution of CO2 production in soil. This information is necessary for determining the importance of deep roots as sources of carbon inputs. Samples were collected for measuring root biomass from new research sites at Santana de Araguaia and Trombetas. Soil gases will be analyzed for CO2 and (14)CO2, and soil organic matter will be analyzed for C-14. Estimates of soil texture from the RADAMBRASIL database were merged with climate data to calculate soil water extraction by forest canopies during the dry season. In addition, a preliminary map of areas where deep roots are needed for deep soil water was produced. A list of manuscripts and papers prepared during the reporting periods is given.

Davidson, Eric A.

Application of LANDSAT to the surveillance of lake eutrophication in the Great Lakes basin

The author has identified the following significant results. A step-by-step procedure for establishing and monitoring the trophic status of inland lakes with the use of LANDSAT data, surface sampling, laboratory analysis, and aerial observations were demonstrated. The biomass was related to chlorophyll-a concentrations, water clarity, and trophic state. A procedure was developed for using surface sampling, LANDSAT data, and linear regression equations to produce a color-coded image of large lakes showing the distribution and concentrations of water quality parameters, causing eutrophication as well as parameters which indicate its effects. Cover categories readily derived from LANDSAT were those for which loading rates were available and were known to have major effects on the quality and quantity of runoff and lake eutrophication. Urban, barren land, cropland, grassland, forest, wetlands, and water were included.

Rogers, R. H.

Satellites for the study of ocean primary productivity

The use of remote sensing techniques for obtaining estimates of global marine primary productivity is examined. It is shown that remote sensing and multiplatform (ship, aircraft, and satellite) sampling strategies can be used to significantly lower the variance in estimates of phytoplankton abundance and of population growth rates from the values obtained using the C-14 method. It is noted that multiplatform sampling strategies are essential to assess the mean and variance of phytoplankton biomass on a regional or on a global basis. The relative errors associated with shipboard and satellite estimates of phytoplankton biomass and primary productivity, as well as the increased statistical accuracy possible from the utilization of contemporaneous data from both sampling platforms, are examined. It is shown to be possible to follow changes in biomass and the distribution patterns of biomass as a function of time with the use of satellite imagery.

Smith, R. C.

Bioenergy Feedstock Library Annual Summary Report 2024

The Bioenergy Feedstock Library (BFL), part of the Biomass Feedstock National User Facility (BFNUF) located at Idaho National Laboratory (INL), is a physical sample repository and a web-accessible electronic database. The BFL stores physical and chemical characteristics of biomass and waste carbon sources for energy use, as well as samples generated from U.S. Department of Energy (DOE) Bioenergy Technologies Office (BETO) and U.S. Department of Agriculture-funded projects. The objective of this Bioenergy Feedstock Library Annual Summary Report for 2024, similar to the 2023 Annual Summary Report , is to focus on the updates to: (1) publicly available analytical data and equipment tracked through the BFNUF, (2) significant increases in the physical samples available for request, (3) sample and data archival progress from recent BETO-funded projects, and (4) publicly available data sets created upon request from BETO, INL projects, or outside entities compared to the previous annual summary reports. This report highlights key statistics and available data and information important for INL, BFL users, academics, and industry.

09 BIOMASS FUELS