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All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Monte Carlo Dropout Uncertainty Quantification of Long Short-Term Memory Autoencoder Anomaly Detection in a Liquid Sodium Cold Trap

Advanced high-temperature fluid reactors, such as sodium-cooled fast reactors (SFRs) and molten salt–cooled reactors (MSCRs), require coolant purification systems to prevent fluid contamination and local freezing that can lead to plugging. Liquid sodium purification can be achieved with a cold trap, where the sodium temperature is reduced to a near-freezing point to precipitate out impurities. Automation of monitoring of the cold trap performance with machine learning algorithms can aid in early detection of incipient anomalies. An efficient approach to loss-of-coolant–type anomaly detection in a cold trap monitored with more than two dozen thermal-hydraulic sensors consists of a long short-term memory (LSTM) autoencoder. This work develops the uncertainty quantification of the LSTM autoencoder performance for cold trap anomaly detection using the Monte Carlo (MC) dropout method. The MC dropout methodology creates a distribution of sister distributions that all slightly differ from each other because of random neurons being turned off for testing. The variances of the sister network distributions are used to make an uncertainty interval. Our analysis shows that the uncertainty in the autoencoder performance is largest near the peak of the anomaly signal. Using the MC dropout method, we investigate the uncertainty in the anomaly detection with missing sensor inputs. This capability allows the reactor operator to evaluate resilience of the anomaly detection system and to make informed decisions about continuity of operation in the event of sensor failure.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2024

Autoencoder-Based Anomaly Detection System for Online Data Quality Monitoring of the CMS Electromagnetic Calorimeter

The CMS detector is a general-purpose apparatus that detects high-energy collisions produced at the LHC. Online data quality monitoring of the CMS electromagnetic calorimeter is a vital operational tool that allows detector experts to quickly identify, localize, and diagnose a broad range of detector issues that could affect the quality of physics data. A real-time autoencoder-based anomaly detection system using semi-supervised machine learning is presented enabling the detection of anomalies in the CMS electromagnetic calorimeter data. A novel method is introduced which maximizes the anomaly detection performance by exploiting the time-dependent evolution of anomalies as well as spatial variations in the detector response. The autoencoder-based system is able to efficiently detect anomalies, while maintaining a very low false discovery rate. The performance of the system is validated with anomalies found in 2018 and 2022 LHC collision data. In addition, the first results from deploying the autoencoder-based system in the CMS online data quality monitoring workflow during the beginning of Run 3 of the LHC are presented, showing its ability to detect issues missed by the existing system.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2025

Temporally-consistent koopman autoencoders for forecasting dynamical systems

Absence of sufficiently high-quality data often poses a key challenge in data-driven modeling of high-dimensional spatio-temporal dynamical systems. Koopman Autoencoders (KAEs) harness the expressivity of deep neural networks (DNNs), the dimension reduction capabilities of autoencoders, and the spectral properties of the Koopman operator to learn a reduced-order feature space with simpler, linear dynamics. However, the effectiveness of KAEs is hindered by limited and noisy training datasets, leading to poor generalizability. To address this, we introduce the Temporally-Consistent Koopman Autoencoder (tcKAE), designed to generate accurate long-term predictions even with limited and noisy training data. This is achieved through a consistency regularization term that enforces prediction coherence across different time steps, thus enhancing the robustness and generalizability of tcKAE over existing models. We provide analytical justification for this approach based on Koopman spectral theory and empirically demonstrate tcKAE’s superior performance over state-of-the-art KAE models across a variety of test cases, including simple pendulum oscillations, kinetic plasma, and fluid flow data.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

Interpretation of autoencoder-learned collective variables using Morse–Smale complex and sublevelset persistent homology: An application on molecular trajectories

Dimensionality reduction often serves as the first step toward a minimalist understanding of physical systems as well as the accelerated simulations of them. In particular, neural network-based nonlinear dimensionality reduction methods, such as autoencoders, have shown promising outcomes in uncovering collective variables (CVs). However, the physical meaning of these CVs remains largely elusive. In this work, we constructed a framework that (1) determines the optimal number of CVs needed to capture the essential molecular motions using an ensemble of hierarchical autoencoders and (2) provides topology-based interpretations to the autoencoder-learned CVs with Morse–Smale complex and sublevelset persistent homology. Furthermore, this approach was exemplified using a series of n-alkanes and can be regarded as a general, explainable nonlinear dimensionality reduction method.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

An autoencoder compression approach for accelerating large-scale inverse problems

Abstract Partial differential equation (PDE)-constrained inverse problems are some of the most challenging and computationally demanding problems in computational science today. Fine meshes required to accurately compute the PDE solution introduce an enormous number of parameters and require large-scale computing resources such as more processors and more memory to solve such systems in a reasonable time. For inverse problems constrained by time-dependent PDEs, the adjoint method often employed to compute gradients and higher order derivatives efficiently requires solving a time-reversed, so-called adjoint PDE that depends on the forward PDE solution at each timestep. This necessitates the storage of a high-dimensional forward solution vector at every timestep. Such a procedure quickly exhausts the available memory resources. Several approaches that trade additional computation for reduced memory footprint have been proposed to mitigate the memory bottleneck, including checkpointing and compression strategies. In this work, we propose a close-to-ideal scalable compression approach using autoencoders to eliminate the need for checkpointing and substantial memory storage, thereby reducing the time-to-solution and memory requirements. We compare our approach with checkpointing and an off-the-shelf compression approach on an earth-scale ill-posed seismic inverse problem. The results verify the expected close-to-ideal speedup for the gradient and Hessian-vector product using the proposed autoencoder compression approach. To highlight the usefulness of the proposed approach, we combine the autoencoder compression with the data-informed active subspace (DIAS) prior showing how the DIAS method can be affordably extended to large-scale problems without the need for checkpointing and large memory.

Mathematics↗
DOE OSTI2023

Lorentz group equivariant autoencoders

Abstract There has been significant work recently in developing machine learning (ML) models in high energy physics (HEP) for tasks such as classification, simulation, and anomaly detection. Often these models are adapted from those designed for datasets in computer vision or natural language processing, which lack inductive biases suited to HEP data, such as equivariance to its inherent symmetries. Such biases have been shown to make models more performant and interpretable, and reduce the amount of training data needed. To that end, we develop the Lorentz group autoencoder (LGAE), an autoencoder model equivariant with respect to the proper, orthochronous Lorentz group $$\textrm{SO}^+(3,1)$$ SO + ( 3 , 1 ) , with a latent space living in the representations of the group. We present our architecture and several experimental results on jets at the LHC and find it outperforms graph and convolutional neural network baseline models on several compression, reconstruction, and anomaly detection metrics. We also demonstrate the advantage of such an equivariant model in analyzing the latent space of the autoencoder, which can improve the explainability of potential anomalies discovered by such ML models.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

Acoustic sensing and autoencoder approach for abnormal gas detection in a spent nuclear fuel canister mock-up

Currently, spent nuclear fuel (SNF) from commercial nuclear power plants is stored in stainless-steel canisters for interim dry storage. To provide an inert environment, these canisters are backfilled with helium after vacuum drying. However, the helium environment may be contaminated during extended storage because of the material degradation. For example, the heavier fission gas xenon may be released from the fuel rods into the canister cavity should the fuel cladding be breached. Other gases such as air and water vapor may also be present as a result of leakage caused by chloride-induced stress corrosion cracking on the canister walls or by insufficient vacuum drying. Therefore, monitoring the gas composition can provide critical information about the health of SNF canisters. In this study, noninvasive testing was conducted on a 2/3-scaled SNF canister mock-up using acoustic sensing. Ultrasonic transducers were placed on the exterior surface of the canister to probe the gas composition. A dataset was collected by sealing the canister mock-up and introducing up to 1.53% argon or 1.29% air into the helium background gas. Three methods were used to detect changes in the gas composition: the time-of-flight (TOF) method, the differential method, and the autoencoder method. Results showed that the TOF method had sufficient resolution to detect abnormal gas concentrations of less than 1.0%. The differential method demonstrated a periodic in-phase and out-of-phase behavior between the benchmark (i.e., pure helium) and abnormal (i.e., with argon or air) state signals. The variational autoencoder (VAE) and the Wasserstein autoencoder (WAE) were trained on the benchmark data and were applied directly to the abnormal state data. It was found that both the unsupervised VAE and the WAE were able to distinguish the benchmark and abnormal states of the canister mock-up based on the reconstruction error.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2022

Multifidelity Ensemble Kalman Filtering Using Surrogate Models Defined by Theory-Guided Autoencoders

Data assimilation is a Bayesian inference process that obtains an enhanced understanding of a physical system of interest by fusing information from an inexact physics-based model, and from noisy sparse observations of reality. The multifidelity ensemble Kalman filter (MFEnKF) recently developed by the authors combines a full-order physical model and a hierarchy of reduced order surrogate models in order to increase the computational efficiency of data assimilation. The standard MFEnKF uses linear couplings between models, and is statistically optimal in case of Gaussian probability densities. This work extends the MFEnKF into to make use of a broader class of surrogate model such as those based on machine learning methods such as autoencoders non-linear couplings in between the model hierarchies. We identify the right-invertibility property for autoencoders as being a key predictor of success in the forecasting power of autoencoder-based reduced order models. We propose a methodology that allows us to construct reduced order surrogate models that are more accurate than the ones obtained via conventional linear methods. Numerical experiments with the canonical Lorenz'96 model illustrate that nonlinear surrogates perform better than linear projection-based ones in the context of multifidelity ensemble Kalman filtering. We additionality show a large-scale proof-of-concept result with the quasi-geostrophic equations, showing the competitiveness of the method with a traditional reduced order model-based MFEnKF.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Anomaly Detection in Connected and Autonomous Vehicle Trajectories Using LSTM Autoencoder and Gaussian Mixture Model

Connected and Autonomous Vehicles (CAVs) technology has the potential to transform the transportation system. Although these new technologies have many advantages, the implementation raises significant concerns regarding safety, security, and privacy. Anomalies in sensor data caused by errors or cyberattacks can cause severe accidents. To address the issue, this study proposed an innovative anomaly detection algorithm, namely the LSTM Autoencoder with Gaussian Mixture Model (LAGMM). This model supports anomalous CAV trajectory detection in the real-time leveraging communication capabilities of CAV sensors. The LSTM Autoencoder is applied to generate low-rank representations and reconstruct errors for each input data point, while the Gaussian Mixture Model (GMM) is employed for its strength in density estimation. The proposed model was jointly optimized for the LSTM Autoencoder and GMM simultaneously. The study utilizes realistic CAV data from a platooning experiment conducted for Cooperative Automated Research Mobility Applications (CARMAs). The experiment findings indicate that the proposed LAGMM approach enhances detection accuracy by 3% and precision by 6.4% compared to the existing state-of-the-art methods, suggesting a significant improvement in the field.

33 ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2022

Time series anomaly detection in power electronics signals with recurrent and ConvLSTM autoencoders

The anomalies in the high voltage converter modulator (HVCM) remain a major down time for the spallation neutron source facility, that delivers the most intense neutron beam in the world for scientific materials research. In this work, we propose neural network architectures based on Recurrent AutoEncoders (RAE) to detect anomalies ahead of time in the power signals coming from the HVCM. Bi-directional gated recurrent unit, bi-directional long-short term memory (LSTM), and convolutional LSTM (ConvLSTM) are developed, trained, and tested using real experimental signals from the HVCM module. The results show a good performance of the proposed RAE models, achieving precision up to 91%, recall up to 88%, false omission rate as low as 20% (i.e. 80% of the anomalies were detected), and area under the ROC curve up to 0.9. The three RAE models provide very comparable performance, with LSTM showing slightly better performance than GRU and ConvLSTM. The RAE models are benchmarked against other anomaly detection methods, including isolation forest, support vector machine, local outlier factor, feedforward and convolutional autoencoders, and others; showing a better performance. Here, the results of this study demonstrate the promising potential of RAE in anomaly detection for real-world power systems, and for increasing the reliability of the HVCM modules in the spallation neutron source.

42 ENGINEERING↗
DOE OSTI2022

Multiresolution convolutional autoencoders

Herein we propose a multi-resolution convolutional autoencoder (MrCAE) architecture that integrates and leverages three highly successful mathematical architectures: (i) multigrid methods, (ii) convolutional autoencoders and (iii) transfer learning. The method provides an adaptive, hierarchical architecture that capitalizes on a progressive training approach for multiscale spatio-temporal data. This framework allows for inputs across multiple scales: starting from a compact (small number of weights) network architecture and low-resolution data, our network progressively deepens and widens itself in a principled manner to encode new information in the higher resolution data based on its current performance of reconstruction. Basic transfer learning techniques are applied to ensure information learned from previous training steps can be rapidly transferred to the larger network. As a result, the network can dynamically capture different scaled features at different depths of the network. The performance gains of this adaptive multiscale architecture are illustrated through a sequence of numerical experiments on synthetic examples and real-world spatial-temporal data.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Variational autoencoders for at-source data reduction and anomaly detection in high energy particle detectors

Detectors in next-generation high-energy physics experiments face several daunting requirements, such as high data rates, damaging radiation exposure, and stringent constraints on power, space, and latency. To address these challenges, machine learning in readout electronics can be leveraged for smart detector designs, enabling intelligent inference and data reduction at-source. Variational autoencoders (VAEs) offer a variety of benefits for front-end readout; an on-sensor encoder can perform efficient lossy data compression while simultaneously providing a latent space representation that can be used for anomaly detection. Results are presented from low-latency and resource-efficient VAEs for front-end data processing in a futuristic silicon pixel detector. Encoder-based data compression is found to preserve good performance of off-detector analysis while significantly reducing the off-detector data rate as compared to a similarly sized data filtering approach. Furthermore, the latent space information is found to be a useful discriminator in the context of real-time sensor defect monitoring. Together, these results highlight the multifaceted utility of autoencoder-based front-end readout schemes and motivate their consideration in future detector designs.

47 OTHER INSTRUMENTATION↗
DOE OSTI2021

Efficient Data Compression for 3D Sparse TPC via Bicephalous Convolutional Autoencoder

Real-time data collection and analysis in large experimental facilities present a great challenge across multiple domains, including high energy physics, nuclear physics, and cosmology. To address this, machine learning (ML)-based methods for real-time data compression have drawn significant attention. However, unlike natural image data, such as CIFAR and ImageNet that are relatively small-sized and continuous, scientific data often come in as three-dimensional 3D data volumes at high rates with high sparsity (many zeros) and non-Gaussian value distribution. This makes direct application of popular ML compression methods, as well as conventional data compression methods, suboptimal. To address these obstacles, this work introduces a dual-head autoencoder to resolve sparsity and regression simultaneously, called Bicephalous Convolutional AutoEncoder (BCAE). This method shows advantages both in compression fidelity and ratio compared to traditional data compression methods, such as MGARD, SZ, and ZFP. To achieve similar fidelity, the best performer among the traditional methods can reach only half the compression ratio of BCAE. Moreover, a thorough ablation study of the BCAE method shows that a dedicated segmentation decoder improves the reconstruction.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

Fast 2D Bicephalous Convolutional Autoencoder for Compressing 3D Time Projection Chamber Data

High-energy large-scale particle colliders produce data at high speed in the order of 1 terabytes per second in nuclear physics and petabytes per second in high energy physics. Developing real-time data compression algorithms to reduce such data at high throughput to fit permanent storage has drawn increasing attention. Specifically, at the newly constructed sPHENIX experiment at the Relativistic Heavy Ion Collider (RHIC), a time projection chamber is used as the main tracking detector, which records particle trajectories in a volume of three-dimensional (3D) cylinder. The resulting data are usually very sparse with occupancy around 10.8%. Such sparsity presents a challenge to conventional learning-free lossy compression algorithms, such as SZ, ZFP, and MGARD. The 3D convolutional neural network (CNN)-based approach, Bicephalous Convolutional Autoencoder (BCAE), outperforms traditional methods both in compression rate and reconstruction accuracy. BCAE can also utilize the computation power of graphical processing units suitable for deployment in a modern heterogeneous highperformance computing environment. This work introduces two BCAE variants: BCAE++ and BCAE-2D. BCAE++ achieves a 15% better compression ratio and a 77% better reconstruction accuracy measured in mean absolute error compared with BCAE. BCAE-2D treats the radial direction as the channel dimension of an image, resulting in a 3× speedup in compression throughput. In addition, we demonstrate an unbalanced autoencoder with a larger decoder can improve reconstruction accuracy without significantly sacrificing throughput. Lastly, we observe both the BCAE++ and BCAE-2D can benefit more from using half-precision mode in throughput (76 - 79% increase) without loss in reconstruction accuracy. The source code and links to data and pretrained models can be found at https://github.com/BNL-DAQ-LDRD/NeuralCompression_v2

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2026

Physicochemical and Performance Characterization of Six Commercial Organic Solvent Nanofiltration Membranes

This work introduces a novel, gradient-free metamaterial design method based on Gaussian process regression to represent the density field of a unit cell. The dimension of the design space is determined by the covariance matrix dimension in the Gaussian process regression. We propose compressing this matrix using an autoencoder, enabling the decoder to generate the density field and effectively reduce the originally large design space to a lower-dimensional subspace. In this compressed space, we employ an active learning method, Bayesian Adaptive Direct Search (BADS), for efficient exploration of the design space. We demonstrate that for simple 2D designs aimed at maximizing unit cell stiffness, our method yields results comparable to those of standard topology optimization. Furthermore, we extend our approach to various mechanical problems, from linear elasticity to hyperelastic large deformation and elasto-plasticity under finite deformation, to 3D metamaterial design. This illustrates the method’s versatility and effectiveness across a range of applications.

Wu, Haoran↗
DOE OSTI2023

A Denoising Autoencoder for Improved Kikuchi Pattern Quality and Indexing in Electron Backscatter Diffraction

The rapid collection and indexing of electron diffraction patterns as produced via electron backscatter diffraction (EBSD) has enabled crystallographic orientation and structural determination, as well as additional property-determining strain and dislocation density information with increasing speed, resolution, and efficiency. Pattern indexing quality is reliant on the noise of the collected electron diffraction patterns, which is often convoluted by sample preparation and data collection parameters. EBSD acquisition is sensitive to many factors and thus can result in low confidence index (CI), poor image quality (IQ), and improper minimization of fit, which can result in noisy datasets and misrepresent the microstructure. In an attempt to enable both higher speed EBSD data collection and enable greater orientation fit accuracy with noisy datasets, an image denoising autoencoder was implemented to improve pattern quality. Here, we show that EBSD data processed through the autoencoder results in a higher CI, IQ, and a more accurate degree of fit. In addition, using denoised datasets in HR-EBSD cross correlative strain analysis can result in reduced phantom strain from erroneous calculations due to the increased indexing accuracy and improved correspondence between collected and simulated patterns.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Learning two-phase microstructure evolution using neural operators and autoencoder architectures

Abstract Phase-field modeling is an effective but computationally expensive method for capturing the mesoscale morphological and microstructure evolution in materials. Hence, fast and generalizable surrogate models are needed to alleviate the cost of computationally taxing processes such as in optimization and design of materials. The intrinsic discontinuous nature of the physical phenomena incurred by the presence of sharp phase boundaries makes the training of the surrogate model cumbersome. We develop a framework that integrates a convolutional autoencoder architecture with a deep neural operator (DeepONet) to learn the dynamic evolution of a two-phase mixture and accelerate time-to-solution in predicting the microstructure evolution. We utilize the convolutional autoencoder to provide a compact representation of the microstructure data in a low-dimensional latent space. After DeepONet is trained in the latent space, it can be used to replace the high-fidelity phase-field numerical solver in interpolation tasks or to accelerate the numerical solver in extrapolation tasks.

36 MATERIALS SCIENCE↗
DOE OSTI2024

Enabling dynamic 3D coherent diffraction imaging via adaptive latent space tuning of generative autoencoders

Abstract Coherent diffraction imaging (CDI) is an advanced non-destructive 3D X-ray imaging technique for measuring a sample’s electron density. The main challenge of CDI is loss of phase information in diffraction intensity measurements, resulting in lengthy iterative reconstruction processes that can return non-unique solutions, which pose challenges for experiments attempting to track dynamic sample evolution through multiple states. As the increased brightness of fourth-generation light sources enables faster sample measurements and drives operando experiments with Bragg CDI, there is a growing need for faster reconstruction techniques that can keep pace. We have developed an adaptive generative autoencoder approach for uniquely tracking a sample’s electron density as it dynamically evolves. Our approach adaptively tunes the low-dimensional latent embedding of a generative autoencoder, enabling a computationally efficient manner to account for time-varying shifting distributions in real-time. Analytic proof of convergence is provided as well as numerical demonstration of sample tracking with noisy measurements.

97 MATHEMATICS AND COMPUTING↗