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At least 37 records · Page 2

The Ontology of Biological Attributes (OBA)—computational traits for the life sciences

Abstract Existing phenotype ontologies were originally developed to represent phenotypes that manifest as a character state in relation to a wild-type or other reference. However, these do not include the phenotypic trait or attribute categories required for the annotation of genome-wide association studies (GWAS), Quantitative Trait Loci (QTL) mappings or any population-focussed measurable trait data. The integration of trait and biological attribute information with an ever increasing body of chemical, environmental and biological data greatly facilitates computational analyses and it is also highly relevant to biomedical and clinical applications. The Ontology of Biological Attributes (OBA) is a formalised, species-independent collection of interoperable phenotypic trait categories that is intended to fulfil a data integration role. OBA is a standardised representational framework for observable attributes that are characteristics of biological entities, organisms, or parts of organisms. OBA has a modular design which provides several benefits for users and data integrators, including an automated and meaningful classification of trait terms computed on the basis of logical inferences drawn from domain-specific ontologies for cells, anatomical and other relevant entities. The logical axioms in OBA also provide a previously missing bridge that can computationally link Mendelian phenotypes with GWAS and quantitative traits. The term components in OBA provide semantic links and enable knowledge and data integration across specialised research community boundaries, thereby breaking silos.

59 BASIC BIOLOGICAL SCIENCES↗

Geostatistical interpolation of streambed hydrologic attributes with addition of left censored data and anisotropy

Spatial geostatistical interpolation of point measurements of streambed attributes in the hyporheic zone may be constrained by the streambed anisotropy, and data density and spatial distribution may significantly impact the results. Spatial clustering and low spatial data density can be caused by bedrock outcropping at the streambed limiting installation of in-stream piezometers. This study examines parameter error variability of the geostatistical interpolation using anisotropic interpolation methods and increasing the data density by adding left censored values (i.e., data below measurement limit) to locations where measurements were limited by exposed bedrock lining the streambed. The reduction in relative standard error of the interpolation was determined for the spatial distributions of streambed attributes including hydraulic conductivity, seepage flux, and mercury solute flux measured in two different years along a study reach in East Fork Poplar Creek, Tennessee, USA. Here, two methods to impute the left censored values were compared including the conventional half the detection limit substitution method, and the Stochastic Approximation of Expectation-Maximization (SAEM) algorithm, which both had comparable results. Imputing left censored data increased the data density to recommended ranges, reduced data clustering, increased the spatial dependence for some attributes, and reduced the standard error for each of the three attributes. For the reach considered herein, addition of the left censored values resulted in a larger error reduction than the consideration of anisotropy within the interpolation, which confirms the benefit of data addition to increase data density within data-limited river corridors.

58 GEOSCIENCES↗

Source Contributions to Fine Particulate Matter and Attributable Mortality in India and the Surrounding Region

Fine particulate matter (PM 2.5 ) is a leading mortality risk factor in India and the surrounding region of South Asia. This study evaluates the contribution of emission sectors and fuels to PM 2.5 mass for 29 states in India and 6 surrounding countries (Pakistan, Bangladesh, Nepal, Bhutan, Sri Lanka, and Myanmar) by combining source-specific emission estimates, stretched grid simulations from a chemical transport model, high resolution hybrid PM 2.5 , and disease-specific mortality estimates. We find that 1.02 (95% Confidence Interval (CI): 0.78-1.26) million deaths in South Asia attributable to ambient PM 2.5 in 2019 were primarily from three leading sectors: residential combustion (28%), industry (15%), and power generation (12%). Solid biofuel is the leading combustible fuel contributing to the PM 2.5 -attributable mortality (31%), followed by coal (17%), and oil and gas (14%). State-level analyses reveal higher residential combustion contributions (35%-39%) in states (Delhi, Uttar-Pradesh, Haryana) with high ambient PM 2.5 (>95 µg/m 3 ). The combined mortality burden associated with residential combustion (ambient) and household air pollution (HAP) in India is 0.72 million (95% CI:0.54-0.89) (68% attributable to HAP, 32% attributable to residential combustion). Our results illustrate the potential to reduce PM 2.5 mass and improve population health by reducing emissions from traditional energy sources across multiple sources in South Asia.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

Social inequalities in climate change-attributed impacts of Hurricane Harvey

Climate change is already increasing the severity of extreme weather events such as with rainfall during hurricanes. But little research to date investigates if, and to what extent, there are social inequalities in climate change-attributed extreme weather event impacts. Here, we use climate change attribution science paired with hydrological flood models to estimate climate change-attributed flood depths and damages during Hurricane Harvey in Harris County, Texas. Using detailed land-parcel and census tract socio-economic data, we then describe the socio-spatial characteristics associated with these climate change-induced impacts. We show that 30 to 50% of the flooded properties would not have flooded without climate change. Climate change-attributed impacts were particularly felt in Latina/x/o neighborhoods, and especially so in Latina/x/o neighborhoods that were low-income and among those located outside of FEMA’s 100-year floodplain. Our focus is thus on climate justice challenges that not only concern future climate change-induced risks, but are already affecting vulnerable populations disproportionately now.

54 ENVIRONMENTAL SCIENCES↗

CAMELSH: A Large-Sample Hourly Hydrometeorological Dataset and Attributes at Watershed-Scale for CONUS

We present CAMELSH (Catchment Attributes and Hourly HydroMeteorology for Large-Sample Studies), the first large-sample hydrometeorological dataset at the hourly scale for the contiguous United States. CAMELSH intergrates hourly meteorological time series, catchment attributes and boundaries from GAGES-II and HydroATLAS for 9,008 catchments across diverse climatic, hydrological, and anthropogenic conditions. In addition, hourly streamflow time series is provided for 3,166 catchments. The dataset spans 45 years (1980–2024) with 11 meteorological variables from the NLDAS-2 forcing dataset, from which we compute nine climate indices related to precipitation, evapotranspiration, seasonality, and snow fraction. Additionally, CAMELSH includes two sets of catchment attributes: 439 from GAGES-II and 195 derived from HydroATLAS. These attributes include factors related to climate, geology, hydrology, river/stream morphology, landscape, nutrient, soil, topography, and anthropogenic influences. Developed in accordance with FAIR (Findability, Accessibility, Interoperability, and Reusability) principles, CAMELSH is the first large-sample dataset at an hourly timescale, supporting machine learning applications for short-term streamflow (flood) prediction and advancing data-driven hydrological research across multiple timescales.

54 ENVIRONMENTAL SCIENCES↗

Machine learning–based extreme event attribution

The observed increase in extreme weather has prompted recent methodological advances in extreme event attribution. We propose a machine learning–based approach that uses convolutional neural networks to create dynamically consistent counterfactual versions of historical extreme events under different levels of global mean temperature (GMT). We apply this technique to one recent extreme heat event (southcentral North America 2023) and several historical events that have been previously analyzed using established attribution methods. We estimate that temperatures during the southcentral North America event were 1.18° to 1.42°C warmer because of global warming and that similar events will occur 0.14 to 0.60 times per year at 2.0°C above preindustrial levels of GMT. Additionally, we find that the learned relationships between daily temperature and GMT are influenced by the seasonality of the forced temperature response and the daily meteorological conditions. Our results broadly agree with other attribution techniques, suggesting that machine learning can be used to perform rapid, low-cost attribution of extreme events.

54 ENVIRONMENTAL SCIENCES↗

Assessing the Value of Seismic Amplitude Versus Offset (AVO) Attributes for CO2 Storage Project Using a Bayesian Network Model for Decision Support

Attributes versus offset (AVO) are a set of measurements to analyze how the characteristics of reflected seismic waves change as a function of the offset. It can be useful for monitoring CO2 storage sites because the presence of leaked CO2 into the overlying aquifer can change the properties of the rocks and pore fluids composition that can alter the way seismic waves reflect and their amplitudes. The time-lapse changes in AVO attributes derived from repeat seismic surveys can help identify anomalies or shifts in the subsurface that could potentially be used as an indicator for CO2 leak detection. Our study leverages multiple seismic attributes derived from synthetic seismic data and Bayesian network model to quantify the probability of leak detection in the overlying aquifer above the storage reservoir. It helps to quantify the value of individual seismic attributes at multiple monitoring periods based upon their sensitivities.

Kumar, Abhash↗

Logging Crew Attributes by Region in the Southeast USA

Urbanization, shrinking markets, and reduced forestry investment may affect harvesting efficiency in regions of the US South. To monitor these conditions, logging businesses have been tracked by surveys conducted by universities and trade associations. This project used a sampling approach coordinated with FIA utilization studies to sample logging crews based on a harvesting location. The approach was used to develop relationships among firm attributes and site attributes in six southeastern states (AL, GA, FL, NC, SC, and VA) from 2011 to 2018. The data included harvest attributes (location, harvest size and stand type) and logging firm attributes (production, crew labor, crew number, the number of machines by type, and machine age). For crew capital value, an equation was developed for this study using machine number and average machine age. The data from logging crews on 419 harvests were analyzed by region, harvest size, and stand type. Mean values for crew labor ranged from 3.1 to 7.1 workers. The average capital value per crew ranged from $\$220,000$ to $\$524,000$ per crew in the Coastal Plain with a narrower range in the Piedmont. In the Coastal Plain, higher productivity was detected for larger harvests and pine versus hardwood and mixed stands; however, in the Piedmont those trends were less obvious. Ratio of feller-bunchers, skidders and loaders were mostly 1:1:1 or 1:2:1 with 41% and 24% of samples, respectively. There were notable trends among Coastal Plain loggers regarding capital value and productivity with evidence supported by a production function. The differences in Piedmont (e.g., ownership size, market access, terrain, population density, etc.) may combine to limit daily production and labor productivity.

54 ENVIRONMENTAL SCIENCES↗

Path-synchronous performance monitoring of interconnection networks based on source code attribution

Examples disclosed herein relate to path-synchronous performance monitoring of an interconnection network based on source code attribution. A processing node in the interconnection network has a profiler module to select a network transaction to be monitored, determine a source code attribution associated with the network transaction to be monitored, and issue a network command to execute the network transaction to be monitored. A logger module creates, in a buffer, a node temporal log associated with the network transaction and the network command. A drainer module periodically captures the node temporal log. The processing node has a network interface controller to receive the network command and mark a packet generated for the network command to be temporally tracked and attributed back to the source code attribution at each hop of the interconnection network traversed by the marked packet.

Chabbi, Milind M.↗

Projecting California Light-Duty Vehicle Attributes (2019-2035)

In this report, we estimated a set of future vehicle attribute scenarios for new light-duty vehicles for the California market using the Automotive Deployment Options Projection Tool (ADOPT). ADOPT starts simulations with all existing vehicle makes and models and endogenously creates new vehicle models over time based on assumed technology improvements and market conditions. For this study, we simulated four scenarios with varied technology, policy, and electric vehicle infrastructure assumptions. We aggregated simulation results into up to 30 vehicle classes (covering size and price classifications) for each powertrain, for six powertrains. We simulated model years 2019 to 2035. We present results for four vehicle attributes: vehicle acceleration, fuel economy (including electric and gasoline for plug-in hybrid electric vehicles [PHEVs]), vehicle range, and vehicle purchase price. We also present results showing the estimated number of vehicle models available in each vehicle class over time. In the Mid scenario, which contains conditions between our most conservative and most optimistic assumptions for emerging electric and hydrogen technologies, we observe improvements in acceleration, range (for battery-electric vehicles [BEVs]), and vehicle purchase price for electric and hydrogen powertrains. In some cases, we project that consumer preferences lead to trade-offs between vehicle attributes, such as reduced fuel economy in exchange for improved acceleration. Conventional vehicles show modest improvements in fuel economy in these scenarios due to the high numbers of BEV and PHEV sales, which reduce the improvements required in conventional vehicles to meet fleet fuel economy standards. In scenarios with advanced technology assumptions (including reduced battery price and improved energy density), we observe further improvements in BEV range and price relative to the improvements in the Mid scenario.

33 ADVANCED PROPULSION SYSTEMS↗

Twin-screw granulation: Mechanistic understanding of the effect of material properties on key granule quality attributes through the analysis of mixing dynamics and granulation rate mechanisms

This study focuses on understanding the effect of material properties on granule quality attributes through the analysis of mixing dynamics and granulation rate mechanisms. Powder wettability, binder viscosity, and liquid-to-solid (L/S) ratio were the factors that were investigated in this study. Further, the mixing occurring inside the twin-screw granulator (TSG) was quantitatively assessed by obtaining the axial dispersion coefficient from the experimentally measured residence time distribution (RTD) curves. It was observed that the quality of the nuclei fed to the kneading zone significantly affected the mixing dynamics. The quality of nuclei was governed by nucleation kinetics, which in turn was principally affected by the liquid saturation of the nuclei and the ratio of drop penetration time and encounter time, which in turn were affected by the L/S ratio and binder viscosity respectively. The hydrophobicity of the blend mainly affected the extent of nucleation. The type of nuclei entering the kneading zone and mixing dynamics in the TSG also determined whether the granulation growth mechanism was “layering-dominant” or “viscous-dominant”. It was also shown that the resultant granule quality attributes were a reflection of the growth mechanisms. Ultimately, a mechanistic link between material properties, mixing dynamics, granulation rate mechanisms, and granule quality attributes was established.

36 MATERIALS SCIENCE↗

The Significance of Environmental Attributes as Indicators of the Life Cycle Environmental Impacts of Packaging and Food Service Ware

The environmental impacts of packaging and food service ware (FSW) are increasingly the subject of government policy, public discourse, and industry commitments. While some consideration is given to reducing the impacts of packaging across its entire life cycle, most of the focus is on packaging waste or feedstock substitution. Efforts typically focus on specific packaging characteristics, or material attributes, commonly perceived to be environmentally preferable. This article summarizes an extensive meta-review of existing published literature that was performed to determine whether the material attributes recyclability, recycled content, compostability, and biobased, commonly considered to be environmentally beneficial, correlate with lower net environmental impacts across the full life cycle of the packaging and FSW. Seventy-one unique life cycle assessment (LCA) studies that quantify the environmental impacts throughout the entire life cycle of packaging and FSW were analyzed. These studies included over 5000 comparisons for 13 impact categories commonly analyzed in LCA studies. The results from the meta-review identified a number of instances where material attributes do not correlate with environmental benefits for packaging and FSW. Rather, other characteristics such as material choice or mass of the packaging/FSW products can have higher influence in determining life cycle impacts.

54 ENVIRONMENTAL SCIENCES↗

A large net carbon loss attributed to anthropogenic and natural disturbances in the Amazon Arc of Deforestation

The Amazon forest contains globally important carbon stocks, but in recent years, atmospheric measurements suggest that it has been releasing more carbon than it has absorbed because of deforestation and forest degradation. Accurately attributing the sources of carbon loss to forest degradation and natural disturbances remains a challenge because of the difficulty of classifying disturbances and simultaneously estimating carbon changes. We used a unique, randomized, repeated, very high-resolution airborne laser scanning survey to provide a direct, detailed, and high-resolution partitioning of aboveground carbon gains and losses in the Brazilian Arc of Deforestation. Our analysis revealed that disturbances directly attributed to human activity impacted 4.2% of the survey area while windthrows and other disturbances affected 2.7% and 14.7%, respectively. Extrapolating the lidar-based statistics to the study area (544,300 km 2 ), we found that 24.1, 24.2, and 14.5 Tg C y −1 were lost through clearing, fires, and logging, respectively. The losses due to large windthrows (21.5 Tg C y −1 ) and other disturbances (50.3 Tg C y −1 ) were partially counterbalanced by forest growth (44.1 Tg C y −1 ). Our high-resolution estimates demonstrated a greater loss of carbon through forest degradation than through deforestation and a net loss of carbon of 90.5 ± 16.6 Tg C y −1 for the study region attributable to both anthropogenic and natural processes. This study highlights the role of forest degradation in the carbon balance for this critical region in the Earth system.

54 ENVIRONMENTAL SCIENCES↗

Impact of solar geoengineering on temperature-attributable mortality

Decisions about solar geoengineering (SG) entail risk–risk tradeoffs between the direct risks of SG and SG’s ability to reduce climate risks. Quantitative comparisons between these risks are needed to inform public policy. We evaluate idealized SG’s effectiveness in reducing deaths from warming using two climate models and an econometric analysis of temperature-attributable mortality. We find SG’s impact on temperature-attributable mortality is uneven with decreases for hotter, poorer regions and increases in cooler, richer regions. Relative to no SG, global mortality is reduced by over 400,000 deaths annually [90% CI: (−1.2 million,2.7 million)] for cooling of 1 °C from 2.5 °C above preindustrial in 2080. We find no evidence that mortality reduction achieved by SG is smaller than the reduction from equivalent cooling by emissions reductions. Combining our estimates with existing estimates of sulphate aerosol injection direct mortality risk from air quality and UV-attributable cancer enables the first quantitative risk-risk comparison of SG. We estimate with 61% probability that the mortality benefits of cooling outweigh these direct SG risks. We find the benefits outweigh these risks by 13 times for our central estimates, or 4 deaths per 100,000 per 1 °C per year [90% CI: (−11,23)]. This is not a comprehensive evaluation of the risk–risk tradeoffs around SG, yet by comparing some of the most consequential impacts on human welfare it is a useful first step. While these findings are robust to a variety of alternative assumptions, considerable uncertainties remain and require further investigation.

Harding, Anthony (ORCID:0000000262898253)↗

Methods and apparatus for comprehensive characterization of performance attributes and damage thresholds of ultrafast laser optics

It is presently well understood that the operational performance limits of optics are determined by three fundamental attributes: the initiation of laser-induced damage, the growth of damage sites, and the transient (nondamaging) modification of optical parameters. The comprehensive characterization of the performance limitations of ultrafast optics requires consideration of all three fundamental attributes. Here, the vast majority of literature to date, however, has focused primarily on damage-initiation and testing systems that are largely focused on determining the damage-initiation threshold under single- and multipulse excitation. In this work, we discuss a testing apparatus that was designed to offer the capability to adequately characterize all three of these performance attributes under femtosecond, near-infrared laser irradiation. Key aspects of methodology are discussed, including high-dynamic-range energy control, variable beam size, wavelength tunability, B-integral management, and functional performance characterization to explore the true operational limits of the components. Example results for a metal-dielectric mirror demonstrate the test station’s operation.

42 ENGINEERING↗

Conditional multi-step attribution for climate forcings

SAND2025-11608O Conditional multi-step attribution for climate forcings and its associated dataset present a framework for attributing a climate impacts, such as stratospheric warming or surface cooling, to a specific magnitude of climate forcing, such as stratospheric aerosol injection. The objective is to improve on existing methods that struggle to attribute highly noisy climate signals. This has potential broader use in climate security applications to identify and understand geoengineering and climate tipping point effects. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Swiler, Laura↗

Observed changes in hydroclimate attributed to human forcing

Observational and modeling studies indicate significant changes in the global hydroclimate in the twentieth and early twenty-first centuries due to anthropogenic climate change. In this review, we analyze the recent literature on the observed changes in hydroclimate attributable to anthropogenic forcing, the physical and biological mechanisms underlying those changes, and the advantages and limitations of current detection and attribution methods. Changes in the magnitude and spatial patterns of precipitation minus evaporation (P–E) are consistent with increased water vapor content driven by higher temperatures. While thermodynamics explains most of the observed changes, the contribution of dynamics is not yet well constrained, especially at regional and local scales, due to limitations in observations and climate models. Anthropogenic climate change has also increased the severity and likelihood of contemporaneous droughts in southwestern North America, southwestern South America, the Mediterranean, and the Caribbean. An increased frequency of extreme precipitation events and shifts in phenology has also been attributed to anthropogenic climate change. While considerable uncertainties persist on the role of plant physiology in modulating hydroclimate and vice versa, emerging evidence indicates that increased canopy water demand and longer growing seasons negate the water-saving effects from increased water-use efficiency.

54 ENVIRONMENTAL SCIENCES↗

VotE-Dams: a compilation of global dams' locations and attributes (v1)

This dataset represents a compilation of two global and three USA-specific datasets of dam locations and their attributes. The major hurdle toward developing this compilation was the identification of duplicates within the source datasets, especially given the variable precision of dam location coordinates. The most immediately-useful product in this dataset is a spreadsheet (VotE-Dams_v1.csv) that documents the unique dams found across the datasets, their coordinates, and their ids within the respective source datasets. We do not reproduce the source datasets (GRaND, GOODD, GeoDAR, NID, and EHA) here, but their download locations are provided in the README files ('Overview' tab). Some of the source datasets are provided as shapefiles, which require geospatial data software to open (e.g. QGIS/ArcGIS for graphical display, geopandas for Python, rgdal for R, many others freely available). The provided README documents metadata of the source datasets and provides attribute-linking information (i.e. matches attributes among various source datasets that contain the same, or similar, information but have different names). Note that the README is provided as both .xslx and a collection of .csvs (one per tab in the .xslx file). We suggest using the .xlsx version that preserves images, formatting, and sheets. .xlsx files can be viewed using (free) Google Docs or Microsoft Excel.Finally, we provide Technical Documentation.pdf that describes the procedures used to identify unique and duplicate dams.The title of this dataset refers to our 'Veins of the Earth' (VotE) project, which seeks to provide a flexible, scale-free representation of the Earth's river networks. Dams are a critical component of VotE as they heavily influence flows throughout river networks.

54 ENVIRONMENTAL SCIENCES↗