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At least 37 records · Page 2

Harnessing Artificial Intelligence for Medical Diagnosis and Treatment During Space Exploration Missions

From May 8th to June 9th, 2023, I had the opportunity to participate in an experiential learning experience at Johnson Space Center in Houston, TX with Exploration Medical Capability (ExMC), an element of the NASA Human Research Program. During this research experience, I was not only able to work on the above titled research project, but also gain an immense exposure to the field of aerospace medicine, make numerous connections within the field, tour NASA facilities, as well as travel to the Aerospace Medical Association Annual Conference (AsMA) in New Orleans. To briefly introduce my project, it is well understood that the medical capabilities available to crew medical officers (CMOs) on the International Space Station will be different than the capabilities available and needed during deep space exploration missions to the Moon, Mars, and beyond. Ground support is particularly limited due to distance, communication delays (or lack of communication), and lack of resupply. Therefore, to support medical care by CMOs on these missions, robust clinical decision support systems (CDSSs) must be designed. The recent publication and public launch of generative artificial intelligence (AI) tools based upon large language models (LLM) such as ChatGPT provides the opportunity to create a smart assistant for onboard triage, diagnosis, and treatment of medical conditions. Ultimately, the overall purpose of the project was to research what AI tools currently exist or are in development, and to see how they might be implemented onboard during exploration class spaceflights of the future. The ExMC element is actively developing several tools to be used in preparation for and during deep space exploration missions. One of those tools, known as IMPACT, is a probabilistic risk assessment model which can be used to propose a desired medical system (based on mass and volume) and suggest the clinical outcomes likely to occur for a design reference mission (DRM). The group recently presented the IMPACT model and a DRM of interest titled “Modified Long Duration Lunar Orbital and Lunar Surface” (mLDLOLS) at the recent AsMA conference. The mLDLOLS mock mission is a 9 month and 6-day deep space exploration mission consisting of time in Moon’s orbit (3 months on the Gateway space station), on the lunar surface (3 months within habitat), and another 3 months on Gateway before return to Earth. For this DRM, IMPACT ultimately outlined a preferred medical system that was then associated with medical conditions considered to be most likely based on frequency, most likely to cause astronaut task time loss (TTL), most likely to cause return to definitive care (RTDC), and most likely cause loss of crew life (LOCL). IMPACT also highlighted the medical capabilities/skills that would be required to care for those medical conditions, such as performing a history of present illness or musculoskeletal exam with ultrasound. The primary objective of the project was to perform a survey of the AI tools and systems applicable to the conditions outlined for the proposed mLDLOLS mission. Using PubMed (including most relevant MeSH terms) and Google Scholar, we then created a robust annotated bibliography organized by condition. The 56-page and over 500 reference annotated bibliography was subsequently used to create a review outline that would become the basis for drafting of a future publication. For the review outline, we took those medical conditions researched within the annotated bibliography (condition-based approach) and deployed a systems-based approach, combining those medical conditions and related tools into ten categories. These categories included general/all-purpose CDSSs, tools to diagnose or manage respiratory, dermatologic, neurologic, auditory and vestibular, ophthalmic, musculoskeletal, infection-associated, and gynecologic conditions, as well as tools that could be deployed in the setting of trauma/emergency. With the completion of the 30-page outline, we then began drafting the review paper. To conclude the research experience, I presented the findings from our survey to the ExMC Clinical and Science team. With these objectives, I ultimately learned about the number of AI tools that exist today to assist medical professionals with the triage, diagnosis, and management of several medical conditions. These tools can span from chatbot assistants to help triage knee pain to vision transformer models that can identify ophthalmic conditions based on ocular surface images captured with a cell phone. We also highlighted the current gaps that exist in the literature alongside the advancements that are needed to make the desired CDSS for deep space exploration missions. With this experience, I certainly confirmed an existing career goal and identified several additional skills needed to become an aerospace medical doctor including knowledge of critical care in an extreme medicine setting, aerospace engineering and human integration systems, artificial intelligence, machine learning, and risk models. I also identified numerous transferable skills for this career goal including the basic knowledge of medicine (MD), deployment of the scientific method for critical thought about new scientific questions (PhD), review of published literature, including creating an annotated bibliography (PhD), as well as detailed scientific writing (PhD). The results of my research will likely guide the design of an all-encompassing onboard medical assistant for use during deep space exploration missions of the future. I plan on sharing the outcomes from this experience with my peers at a student seminar in the Fall semester on August 30th. During the seminar, I will detail the project, my experience at NASA and AsMA, as well as offer best practice guidelines for students entertaining similar experiences or careers. In conclusion, I would like to thank the WVU School of Medicine, Research and Graduate Education office, as well as NASA ExMC for the unwavering support of this life-changing experience.

Ryan A. Lacinski↗

Use of TEMPO as a Proxy for Hyperspectral Geostationary Ocean Color Measurements from the GeoXO OCX Instrument: Harnessing Machine Learning and Principal Component Techniques for Atmospheric and Glint Correction

Retrievals of ocean color from space are important for better understanding the ocean ecosystem. The launch of atmospheric geostationary hyperspectral sensors such as TEMPO, provides a unique opportunity to examine the diurnal variability in ocean ecology. While TEMPO does not have as high spatial resolution or full spectral coverage as planned coastal ocean sensors such as the Geosynchronous Littoral Imaging and Monitoring Radiometer (GLIMR) or GeoXO Ocean Color instrument (OCX), its hourly measurements provide coverage of regions such as Lake Erie and the Gulf of Mexico at spatial scales of approximately 5 km. These data can be useful for testing new algorithms. We will apply our newly developed machine learning based atmospheric correction approach for ocean color retrievals to TEMPO data. Our approach begins by decomposing measured radiances from hyperspectral sensors into spectral features that describe the scattering and absorption of the atmosphere as well as the underlying surface reflectance. The coefficients of the principal components are then used to train a neural network to predict ocean color properties derived from collocated MODIS/VIIRS physically-based retrievals. This machine learning approach does not rely on radiative transfer modeling, and the use of MODIS/VIIRS data for training accounts for possible calibration b in hyperspectral data. Previously, we applied our approach using blue and UV wavelengths with the Ozone Monitoring Instrument (OMI) and TROPOspheric Monitoring Instrument (TROPOMI) to show that it can estimate ocean color properties in less-than-ideal conditions such as lightly to moderately clouded conditions as well as sun glint and thus improve the spatial coverage of ocean color measurements. TEMPO provides an opportunity to improve on this approach since it will provide collocated measurements at green and red wavelengths that were not available from OMI and TROPOMI and are important particularly for coastal waters. Additionally, our technique can be applied early in the mission and has potential to demonstrate the value of near real time ocean color products that are important for monitoring of harmful algae blooms and other oceanic phenomena.

Zachary Fasnacht↗

Analyzing Machine Learning Predictions of Passive Microwave Brightness Temperature Spectral Difference Over Snow-Covered Terrain in High Mountain Asia

Snow is an important component of the terrestrial freshwater budget in high mountainAsia (HMA) and contributes to the runoff in Himalayan rivers through snowmelt. Despitethe importance of snow in HMA, considerable spatiotemporal uncertainty exists across the different estimates of snow water equivalent for this region. In order to better estimate snow water equivalent, radiative transfer models are often used in conjunction with microwave brightness temperature measurements. In this study, the efficacy of support vector machines (SVMs), a machine learning technique, to predict passive microwave brightness temperature spectral difference (1Tb) as a function of geophysical variables (snow water equivalent, snow depth, snow temperature, and snow density) is explored through a sensitivity analysis. The use of machine learning (as opposed to radiative transfer models) is a relatively new and novel approach for improving snow water equivalent estimates. The Noah-MP land surface model within the NASALand Information System framework is used to simulate the hydrologic cycle over HMA and model geophysical variables that are then used for SVM training. The SVMsserve as a nonlinear map between the geophysical space (modeled in Noah-MP) andthe observation space (1Tb as measured by the radiometer). Advanced MicrowaveScanning Radiometer-Earth Observing System measured passive microwave brightness temperatures over snow-covered locations in the HMA region are used as training data during the SVM training phase. Sensitivity of well-trained SVMs to each Noah-MP modeled state variable is assessed by computing normalized sensitivity coefficients. Sensitivity analysis results generally conform with the known first-order physics. Input states that increase volume scattering of microwave radiation, such as snow density and snow water equivalent, exhibit a plurality of positive normalized sensitivity coefficients. In general, snow temperature was the most sensitive input to the SVM predictions. The sensitivity of each state is location and time dependent. The signs of normalized sensitivity coefficients that indicate physical irrationality are ascribed to significant cross-correlation between Noah-MP simulated states and decreased SVM prediction capability at specific locations due to insufficient training data. SVM prediction pitfalls do exist that serve to highlight the limitations of this particular machine learning algorithm.

high mountain Asia↗

A strategic systems perspective of organizational learning theory: models for a case study at the Jet Propulsion Laboratory

Organizational learning is an umbrella term that covers a variety of topics including; learning curves, productivity, organizational memory, organizational forgetting, knowledge transfer, knowledge sharing and knowledge creation. This treatise will review some of these theories in concert with a model of how organizations learn.

organizational learning strategy innovation design↗

Quantum Hardware-Enabled Molecular Dynamics via Transfer Learning

The ability to perform ab initio molecular dynamics simulations using potential energy surfaces provided by quantum computers would open the door to virtually exact dynamics for a variety of chemical and biochemical systems, with impacts on catalysis and biophysics. Nonetheless, performing molecular dynamics on surfaces produced by quantum hardware has been hampered by the noisy energies typically produced by quantum computers and challenges associated with computing gradients and scaling to large systems interest. A recent set of advances in machine learning, known as transfer learning, provides a new path forward for molecular dynamics simulations on quantum hardware. Transfer learning offers a workaround, where one first trains models on larger, less accurate classical datasets and then refines them on smaller, more accurate quantum datasets. We explore this approach by training machine learning models to predict a molecule's potential energy based on its geometric structure using Behler-Parrinello neural networks. When successfully trained, the model enables energy gradient predictions necessary for dynamic simulations. To reduce the quantum resources needed, the model is initially trained with data derived from classical density functional theory and subsequently refined with a smaller dataset obtained from a variational quantum eigensolver optimization of the unitary coupled cluster ansatz. We show that this approach significantly reduces the size of the needed quantum training dataset while capturing the high accuracies needed within quantum chemistry simulations. The success of this two-step training method opens more opportunities to apply machine learning models on quantum data, a significant stride towards efficient quantum-classical hybrid computational models.

quantum computing↗

NASA Earth: Synthetic Spectranomics - Deep Learning of Surface 3-D Geometry, Chemistry, and Hyperspectra to Inform Next-generation Land Models

Machine and deep learning (ML/DL) have transformed our approach to Earth observation and system modeling (EOSM), unifying both in view of ML/DL models as a form of data assimilation (DA). Trained on diverse Earth observation records, detailed physical models, or hybrids of both in physics-informed machine learning, ML/DL may improve upon existing Earth system model (ESM) formulations while creating entirely new classes of models. One important application of deep learning is observation synthesis, allowing ESM developers to prepare for the increased spatial, temporal, and spectral/polar resolution of proposed future observing systems. This may involve the retrospective application of learning algorithms to existing observational records, with or without physical radiative transfer models, to co-inform mission planning and ESM development while providing a degree of data continuity for new missions.

Adam Erickson↗

Improving Sim-to-Real Transfer in Vision-Based Robot Navigation Via Instance-Level GAN-Based Data Augmentation

Achieving robust vision-based robotic tasks requires large amounts of data, which are often difficult to obtain in real-world scenarios. Simulators and synthetic data offer a cost-effective alternative, but the visual gap between simulation and reality hinders the performance of models when deployed in real-world environments. In this paper, we present a data augmentation pipeline that integrates a foundation model (Segment Anything Model) with an unsupervised image-to-image translation model (CycleGAN) for instance-level domain transfer from simulation to reality. This pipeline enables the generation of realistic labeled data from synthetic images for training supervised machine learning models in vision-based navigation tasks. We evaluate our approach on real-world data for ego-vehicle pose estimation, a critical autonomous navigation task involving the prediction of cross-track position and heading angle relative to road center line markings. The results of our tests show that our GAN-based data augmentation pipeline significantly outperforms models trained solely on simulation data or on data processed with standard image augmentation methods for sim-to-real transfer, enhancing model robustness and generalizability in real-world scenarios. Our method provides a scalable and flexible data augmentation tool for leveraging large synthetic datasets to enhance vision-based robotic navigation tasks.

artificial intelligence↗

Neural Network Reflectance Prediction Model for Both Open Ocean and Coastal Waters

Remote sensing of global ocean color is a valuable tool for understanding the ecology and biogeochemistry of the worlds oceans, and provides critical input to our knowledge of the global carbon cycle and the impacts of climate change. Ocean polarized reflectance contains information about the constituents of the upper ocean euphotic zone, such as colored dissolved organic matter (CDOM), sediments, phytoplankton, and pollutants. In order to retrieve the information on these constituents, remote sensing algorithms typically rely on radiative transfer models to interpret water color or remote-sensing reflectance; however, this can be resource-prohibitive for operational use due to the extensive CPU time involved in radiative transfer solutions. In this work, we report a fast model based on machine learning techniques, called Neural Network Reflectance Prediction Model (NNRPM), which can be used to predict ocean bidirectional polarized reflectance given inherent optical properties of ocean waters. This supervised model is trained using a large volume of data derived from radiative transfer simulations for coupled atmosphere and ocean systems using the successive order of scattering technique (SOS-CAOS). The performance of the model is validated against another large independent test dataset generated from SOS-CAOS. The model is able to predict both polarized and unpolarized reflectances with an absolute error (AE) less than 0.004 for 99% of test cases. We have also shown that the degree of linear polarization (DoLP) for unpolarized incident light can be predicted with an AE less than 0.002 for 99% of test cases. In general, the simulation time of SOS-CAOS depends on optical depth, and required accuracy. When comparing the average speeds of the NNRPM against the SOS-CAOS model for the same parameters, we see that the NNRPM is able to predict the Ocean BRDF 6000 times faster than SOS-CAOS. Both ultraviolet and visible wavelengths are included in the model to help differentiate between dissolved organic material and chlorophyll in the study of the open ocean and the coastal zone. The incorporation of this model into the retrieval algorithm will make the retrieval process more efficient, and thus applicable for operational use with global satellite observations.

radiative transfer↗

Microstructure Segmentation With Deep Learning Encoders Pre-Trained on a Large Microscopy Dataset

This study examined the improvement of microscopy segmentation intersection over union accuracy by transfer learning from a large dataset of microscopy images called MicroNet. Many neural network encoder architectures were trained on over 100,000 labeled microscopy images from 54 material classes. These pre-trained encoders were then embedded into multiple segmentation architectures including UNet and DeepLabV3+ to evaluate segmentation performance on created benchmark microscopy datasets. Compared to ImageNet pre-training, models pre-trained on MicroNet generalized better to out-of-distribution micrographs taken under different imaging and sample conditions and were more accurate with less training data. When training with only a single Ni-superalloy image, pre-training on MicroNet produced a 72.2% reduction in relative intersection over union error. These results suggest that transfer learning from large in-domain datasets generate models with learned feature representations that are more useful for downstream tasks and will likely improve any microscopy image analysis technique that can leverage pre-trained encoders.

machine learning↗

The PACE-MAPP Algorithm: Simultaneous Aerosol and Ocean Products From Combined Polarimeter and Shortwave Infrared Measurements

PACE-MAPP collaborative algorithm project - Produce accurate aerosol optical and microphysical properties and ocean properties - Use a coupled atmosphere-ocean vector radiative transfer (VRT) model - Use accurate but fast Mie/SS/T-matrix LUTs - Use scientific machine learning to speed-up retrievals by 1000x (PACE-MAPP Neural Network) - PACE-MAPP is a multi-instrument polarimeter algorithm for SPEXone, HARP2, OCI shortwave infrared channels

Snorre Alfred Moen Stamnes↗

Using Machine Learning for Timely Estimates of Ocean Color Information From Hyperspectral Satellite Measurements in the Presence of Clouds, Aerosols, and Sunglint

Retrievals of ocean color from space are important for better understanding of the ocean ecosystem but can be limited under conditions such as clouds, aerosols, and sunglint. Many ocean color algorithms use a few selected spectral bands to perform an atmospheric correction and then derive the upwelling radiance from the ocean. The limitations in the atmospheric correction under certain conditions lead to many gaps in daily spatial coverage of ocean color retrievals. To address these limitations, we introduce a new approach that uses machine learning to estimate ocean color from top of atmosphere radiances or reflectance measurements. In this approach, a principal component analysis is used to decompose the hyperspectral measurements into spectral features that describe the scattering and absorption of the atmosphere and the underlying surface. The coefficients of the principal components are then used to train a neural network to predict ocean color properties derived from the MODIS atmospheric correction algorithm. This machine learning approach is independent of a priori information and does not rely on any radiative transfer modeling. We apply the approach to two hyperspectral UV/VIS instruments, the ozone monitoring instrument (OMI) and the TROPOspheric Monitoring Instrument (TROPOMI), using measurements from 320–500 nm to show that it can be used to reproduce ocean color properties in less-than-ideal conditions. This machine learning approach complements the current atmospheric correction ocean color retrievals by filling in the gaps resulting from cloud, aerosol, and sunglint contamination. This method can be applied to the future hyperspectral Ocean Color Instrument (OCI), which will be onboard NASA’s Plankton, Aerosol Cloud, ocean Ecosystem (PACE) ocean color satellite set to launch in 2024.

Ocean color↗

Onboard Nonlinear Engine Sensor and Component Fault Diagnosis and Isolation Scheme

A method detects and isolates in-flight sensor, actuator, and component faults for advanced propulsion systems. In sharp contrast to many conventional methods, which deal with either sensor fault or component fault, but not both, this method considers sensor fault, actuator fault, and component fault under one systemic and unified framework. The proposed solution consists of two main components: a bank of real-time, nonlinear adaptive fault diagnostic estimators for residual generation, and a residual evaluation module that includes adaptive thresholds and a Transferable Belief Model (TBM)-based residual evaluation scheme. By employing a nonlinear adaptive learning architecture, the developed approach is capable of directly dealing with nonlinear engine models and nonlinear faults without the need of linearization. Software modules have been developed and evaluated with the NASA C-MAPSS engine model. Several typical engine-fault modes, including a subset of sensor/actuator/components faults, were tested with a mild transient operation scenario. The simulation results demonstrated that the algorithm was able to successfully detect and isolate all simulated faults as long as the fault magnitudes were larger than the minimum detectable/isolable sizes, and no misdiagnosis occurred

Tang, Liang↗

Exploring Applications of Machine Learning for Wildfire Monitoring and Detection using Unmanned Aerial Vehicles

Wildfires are increasing in frequency and severity around the world, including the United States. The losses caused by wildfires could be mitigated if high-risk areas, hotspots, and flare-ups could be monitored continuously, such as through the use of Unmanned Aerial Vehicles (UAVs). This paper documents exploratory efforts using machine learning to determine efficient flight paths for UAVs and to detect wildfires using image classification. On path planning, three machine learning techniques—Genetic Algorithm, Simulated Annealing, and Dynamic Programming—were explored. Genetic Algorithm was found to be an effective approach for path planning for wildfire monitoring and surveillance by UAVs. For a scenario of 25 locations in a circular arrangement, the algorithm was able to return the optimal path. The accuracy and execution time was found to be sensitive to the algorithm hyperparameters selected, which was especially evident in scenarios with hundreds or thousands of locations. Simulated Annealing was also found to be an effective approach for UAV path planning, with a major benefit of avoiding getting trapped in local minima and being straightforward to implement. Like Genetic Algorithm, the performance of Simulated Annealing was also found to be sensitive to the algorithm hyperparameters selected. By comparison, Dynamic Programming guarantees optimality for any number of locations, but it was found to be less practical in terms of execution time for scenarios with more than about a couple dozen locations. On wildfire detection, image classification using deep learning with a convolutional neural network was explored. Transfer learning was found to be a useful technique to efficiently train deep learning models. Also, it was determined that GPU processing can increase training speed by an order of magnitude, which enables significantly faster development. For a validation test set of 500 images, there were only two false negatives and zero false positives. These results demonstrate that detecting wildfires in static cameras using machine learning is feasible and establish a baseline for using images captured by UAVs in flight for wildfire detection.

Wildfire management↗

GEONEX: Progressive Conditional Generative Adversarial Training Using Transfer learning

Obtaining accurate segmentation on large scale images is an open problem in deep learning. The main problem is the amount of labeled data that exists for large scale images. Traditionally, the common solution to this problem is to crop the large images into smaller images to increase the amount of available data and train a Conditional Generative Adversarial Network (CGAN). CGANs are currently the state of the art in image to image translation and provide better accuracy than the traditional method of training a encoder based conv-net architecture to minimize the loss at each pixel. This method can produce noisy and discontinuous images with inaccurate results. We seek to solve this problem by utilizing the concepts of transfer learning and progressive training to create a CGAN that can segment large scale images with a limited amount of labeled data. In transfer learning we recognize that many learned features are applicable to many classes from multiple domains. This introduces the concept of feature reusability, which is the basis for finetuning. Progressive training got its start in training models on the same images at different resolutions. In this work we instead train a GAN on increasing image scales by transferring the weights from the smaller scales to the larger scales. The learned features at the smaller scales are continually reused and applied to larger scales to create a CGAN that can perform accurate segmentation on large scale images. We apply this method to detect building footprints on very high-resolution overhead imagery (e.g Digital Globe and high resolution airborne platforms).

GEONEX↗

A Deep Learning Approach to Fast Radiative Transfer

Due to the sheer volume of data, leveraging satellite instrument observations effectively in a data assimilation context for numerical weather prediction or for remote sensing requires a radiative transfer model as an observation operator that is both fast and accurate at the same time. Physics-based line-by-line radiative transfer (RT) models fulfil the requirement for accuracy, but are too slow and too costly in computational terms for operational applications. Therefore, fast methods were developed to be able to perform fast RT calculations using techniques such as spectral sampling or pre-computed look-up tables. The operational fast models currently calculate the absorption and scattering coefficients from the pre-computed regression coefficients and atmospheric state and cloud profiles. As a novel solution to this problem, this work investigates a deep learning approach to replace the regression coefficients in the fast RT models. A selection of hidden-layer neural network configurations is trained against atmospheric transmittance profile data computed by an accurate line-by-line model and their performance is evaluated and their advantages and disadvantages are discussed.

Machine learning↗

Automated Pneumothorax Diagnosis using Deep Neural Networks

Thoracic ultrasound can provide information leading to rapid diagnosis of pneumothorax with improved accuracy over the standard physical examination and with higher sensitivity than anteroposterior chest radiography. However, the clinical We have Furthermore, remote environments, such as the battlefield or deep-space exploration, may lack expertise for diagnosing developed an automated image interpretation pipeline for the analysis of thoracic ultrasound data and the classification of pneumothorax events to provide decision support in such situations. Our pipeline consists of image preprocessing, data augmentation, and deep learning architectures for medical diagnosis. In this work, we demonstrate that robust, accurate interpretation of chest images and video can be achieved using deep neural networks. A number of novel image processing techniques were employed to achieve this result. Affine transformations were applied for data augmentation. Hyperparameters were optimized for learning rate, dropout regularization, batch size, and epoch iteration by a sequential model-based Bayesian approach. In addition, we utilized pretrained architecturesinterpretation of a patient medical image is highly operator dependent. certain pathologies., applying transfer learning and fine-tuning techniques to fully connected layers. Our pipeline yielded binary classification validation accuracies of 98.3% for M-mode images and 99.8% with B-mode video frames.

US Army collaboration↗

Fast Machine Learning Lidar Surrogate Simulator: Pristine Clear Sky

The simulations of lidar signals and retrievals rely on a range of optic-physical models, such as radiative transfer models, particle scattering and absorption models, along with the output data from atmospheric physical models. Integrating these different models to represent signals of a lidar system is computationally expensive, and performing backward retrievals can be complex and ambiguous. However, with the advantages of Machine Learning, there is a new potential for building effective lidar signal database linked to corresponding atmospheric profiles. For this project, we are developing a fast pre-trained neural network as the lidar surrogate simulator using simulated data for a CALIPSO-like lidar (355 nm, 532nm, and 1064nm), and a CO2 differential absorption lidar (DIAL) near 1571nm. Specifically, we utilize a long short-term memory (LSTM) model to map the relationships between atmospheric profiles (pressure, temperature, air density and CO2 mixing ratio) and lidar signals. This approach allows us to build machine learning based simulators that can reconstruct lidar signals at specific bands from MERRA reanalysis data, and perform retrievals of atmospheric profiles using lidar signals at various wavelengths. As a first step, the results show the potential of this method to establish a foundational model for sensor signals. This model offers the promise of enabling both accurate predictions and rapid retrievals, providing a more efficient approach to signal processing and analysis.

Shan Zeng↗

Microstructure Segmentation with Deep Learning Encoders Pre-Trained on a Large Microscopy Dataset

This study examined the improvement of microscopy segmentation accuracy by transfer learning from a large dataset of microscopy images called MicroNet. Many neural network encoder architectures, including VGG, Inception, and ResNet, were trained on over 100,000 labelled microscopy images from 54 classes. These pre-trained encoders were then embedded into multiple segmentation architectures including U-Net and DeepLabV3+ to evaluate segmentation performance on newly created benchmark microscopy datasets. Compared to ImageNet pre-training, models pre-trained on MicroNet generalized better to out-of-distribution micrographs taken under different imaging and sample conditions and were more accurate with less training data. When training with only a single Ni-superalloy image, pre-training on MicroNet produced a 72.2 percent reduction in relative segmentation error. These results suggest that transfer learning from large in-domain datasets generate models with learned feature representations that are more useful for downstream tasks and will likely improve any microscopy image analysis technique that can leverage pre-trained encoders.

machine learning↗