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NASA NTRS1994

Correlation approach to identify coding regions in DNA sequences

Recently, it was observed that noncoding regions of DNA sequences possess long-range power-law correlations, whereas coding regions typically display only short-range correlations. We develop an algorithm based on this finding that enables investigators to perform a statistical analysis on long DNA sequences to locate possible coding regions. The algorithm is particularly successful in predicting the location of lengthy coding regions. For example, for the complete genome of yeast chromosome III (315,344 nucleotides), at least 82% of the predictions correspond to putative coding regions; the algorithm correctly identified all coding regions larger than 3000 nucleotides, 92% of coding regions between 2000 and 3000 nucleotides long, and 79% of coding regions between 1000 and 2000 nucleotides. The predictive ability of this new algorithm supports the claim that there is a fundamental difference in the correlation property between coding and noncoding sequences. This algorithm, which is not species-dependent, can be implemented with other techniques for rapidly and accurately locating relatively long coding regions in genomic sequences.

Non-NASA Center↗

NASA NTRS1994

Forecast skill of a high-resolution real-time mesoscale model designed for weather support of operations at Kennedy Space Center and Cape Canaveral Air Station

NASA funded Mesoscale Environmental Simulations and Operations (MESO), Inc. to develop a version of the Mesoscale Atmospheric Simulation System (MASS). The model has been modified specifically for short-range forecasting in the vicinity of KSC/CCAS. To accomplish this, the model domain has been limited to increase the number of horizontal grid points (and therefore grid resolution) and the model' s treatment of precipitation, radiation, and surface hydrology physics has been enhanced to predict convection forced by local variations in surface heat, moisture fluxes, and cloud shading. The objective of this paper is to (1) provide an overview of MASS including the real-time initialization and configuration for running the data pre-processor and model, and (2) to summarize the preliminary evaluation of the model's forecasts of temperature, moisture, and wind at selected rawinsonde station locations during February 1994 and July 1994. MASS is a hydrostatic, three-dimensional modeling system which includes schemes to represent planetary boundary layer processes, surface energy and moisture budgets, free atmospheric long and short wave radiation, cloud microphysics, and sub-grid scale moist convection.

Taylor, Gregory E.↗

NASA NTRS2001

Use of Remotely-Sensed Rainfall Data in Global Modeling and Data Assimilation

Precipitation observations derived from microwave sensors available from the Tropical Rainfall Measuring Mission (TRMM) and the proposed Global Precipitation Mission (GPM) can provide crucial information needed for improving global modeling, data assimilation, and numerical weather prediction. New methodologies are being developed at NASA to make effective use of this new data type in these applications. Currently, global analyses contain significant errors in primary hydrological fields such as precipitation and evaporation, especially in the tropics. We show that assimilating 6-h averaged TRMM rainfall retrievals improves not only the hydrological cycle but also key climate parameters such as clouds, radiation, and the upper tropospheric moisture in the analysis produced by the Goddard Earth Observing System (GEOS) Data Assimilation System. The improved analysis also leads to improved short-range forecasts in the tropics. The above results were obtained using a variational assimilation procedure that uses rainfall observations to derive moisture and temperature tendency corrections every 6 hours to compensate for errors arising from imperfect initial conditions and deficiencies in the model physics. We will describe a developmental path towards using space-borne rainfall data to empirically estimate and correct for state-dependent systematic errors in parameterized model physics. The study provides a demonstration of the potential of using remote-sensed rainfall data from microwave instruments to improve the 4-dimensional global datasets for climate analysis and numerical weather prediction.

Hou, Arthur↗

NASA NTRS1989

A laboratory investigation into microwave backscattering from sea ice

The purpose of the research reported here was to determine the sources of scattering of artificial sea ice, to compare backscatter measurements semi-quantitatively with theoretical predictions, and to develop inexpensive polarimetric radars for sea ice backscatter studies. A brief review of the dielectric properties of sea ice and of commonly used surface and volume scattering theories is presented. We provide a description of the backscatter measurements performed and experimental techniques used. The development of inexpensive short-range polarimetric radars is discussed. We discuss limitations of this system and the development of a radar that avoids the oscillator instability problems of continuously tunable oscillators by doing measurements at discrete frequencies, using a synthesized frequency source. We present results of simple test of copolar phase capability and a simple method of doing phase calibrations. We discuss ice surface characterization data and techniques. We also present a method of estimating the standard deviation of rms height and correlation length for cases of few data points.

Bredow, Jonathan W.↗

NASA NTRS1989

A laboratory investigation into microwave backscattering from sea ice

The sources of scattering of artificial sea ice were determined, backscatter measurements semi-quantitatively were compared with theoretical predictions, and inexpensive polarimetric radars were developed for sea ice backscatter studies. A brief review of the dielectric properties of sea ice and of commonly used surface and volume scattering theories is presented. A description is provided of the backscatter measurements performed and experimental techniques used. The development of inexpensive short-range polarimetric radars is discussed. The steps taken to add polarimetric capability to a simple FM-W radar are considered as are sample polarimetric phase measurements of the radar. Ice surface characterization data and techniques are discussed, including computation of surface rms height and correlation length and air bubble distribution statistics. A method is also presented of estimating the standard deviation of rms height and correlation length for cases of few data points. Comparisons were made of backscatter measurements and theory. It was determined that backscatter from an extremely smooth saline ice surface at C band cannot be attributed only to surface scatter. It was found that snow cover had a significant influence on backscatter from extremely smooth saline ice at C band.

Bredow, Jonathan W.↗

NASA NTRS1994

Experiments with the Mesoscale Atmospheric Simulation System (MASS) using the synthetic relative humidity

This study is intended to examine the impact of the synthetic relative humidity on the model simulation of mesoscale convective storm environment. The synthetic relative humidity is derived from the National Weather Services surface observations, and non-conventional sources including aircraft, radar, and satellite observations. The latter sources provide the mesoscale data of very high spatial and temporal resolution. The synthetic humidity data is used to complement the National Weather Services rawinsonde observations. It is believed that a realistic representation of initial moisture field in a mesoscale model is critical for the model simulation of thunderstorm development, and the formation of non-convective clouds as well as their effects on the surface energy budget. The impact will be investigated based on a real-data case study using the mesoscale atmospheric simulation system developed by Mesoscale Environmental Simulations Operations, Inc. The mesoscale atmospheric simulation system consists of objective analysis and initialization codes, and the coarse-mesh and fine-mesh dynamic prediction models. Both models are a three dimensional, primitive equation model containing the essential moist physics for simulating and forecasting mesoscale convective processes in the atmosphere. The modeling system is currently implemented at the Applied Meteorology Unit, Kennedy Space Center. Two procedures involving the synthetic relative humidity to define the model initial moisture fields are considered. It is proposed to perform several short-range (approximately 6 hours) comparative coarse-mesh simulation experiments with and without the synthetic data. They are aimed at revealing the model sensitivities should allow us both to refine the specification of the observational requirements, and to develop more accurate and efficient objective analysis schemes. The goal is to advance the MASS (Mesoscal Atmospheric Simulation System) modeling expertise so that the model output can provide reliable guidance for thunderstorm forecasting.

Chang, Chia-Bo↗

NASA NTRS1988

Mesoscale modeling of the severe thunderstorm environment

The abilities of limited-area mesoscale models to provide accurate predictions of the environment of midlatitude severe thunderstorms and the possible feedback effects of the storms upon their environment are reviewed. Mesoaplha-scale models, mesobeta models, and terrain-induced mesoscale systems are discussed. The importance of the initial state and model numerics and physics is examined. It is found that mesoscale models must be run locally if they are to be used for short-range forecasting.

Koch, Steven E.↗

NASA NTRS1976

Prediction of convective activity using a system of parasitic-nested numerical models

A limited area, three dimensional, moist, primitive equation (PE) model is developed to test the sensitivity of quantitative precipitation forecasts to the initial relative humidity distribution. Special emphasis is placed on the squall-line region. To accomplish the desired goal, time dependent lateral boundaries and a general convective parameterization scheme suitable for mid-latitude systems were developed. The sequential plume convective parameterization scheme presented is designed to have the versatility necessary in mid-latitudes and to be applicable for short-range forecasts. The results indicate that the scheme is able to function in the frontally forced squallline region, in the gently rising altostratus region ahead of the approaching low center, and in the over-riding region ahead of the warm front. Three experiments are discussed.

Perkey, D. J.↗

NASA NTRS1982

Predictability of ultralong waves in global and hemispheric quasi-geostrophic barotropic models

A global quasi-geostrophic barotropic model, including orography, zonal forcing, and frictional dissipation, is compared to two hemispheric models, one with antisymmetric equatorial boundary conditions and one with symmetric boundary conditions. The stationary solutions in the global model and the hemispheric models are found to be different, because the hemispheric models lack either the symmetric or antisymmetric waves, and because the nonlinear feedbacks are much larger in the hemispheric models. Time-dependent calculations show that the hemispheric models can excite anomalous Rossby waves and can produce erroneous short-range forecasts in middle latitudes. It is concluded that global models are preferred for making both short-range and long-range forecasts for middle latitudes.

Roads, J. O.↗

NASA NTRS1986

Simulation experiments for testing the assimilation of geostationary satellite temperature retrievals into a numerical prediction model

A simulation experiment is presented which tests a procedure that assimilates temperature soundings from geostationary satellites using a method developed by Gal-Chen (1983). The simulation is used to decide whether the increased temporal resolution of geostationary satellite data can be used to improve numerical simulation of a baroclinically unstable wave, and to assess the impact of gaps in the satellite sounding fields on the model simulations. Background information on the simulation experiment is presented, including discussion of the variational approach utilized, the numerical model, updating procedures, and control run. The simulation results indicate that, for the case of a baroclinically unstable wave, considerable improvements in the short-range forecast may be realized if geostationary satellite data are inserted with a frequency near 1 hr during a 6 hr analysis cycle compared with a single insertion.

Gal-Chen, T.↗

NASA NTRS1976

Interactive applications of satellite observations and mesoscale numerical models

The impact of numerical weather prediction (NWP) and satellite meteorology on operational weather forecasting has become overwhelming in the past few years. The paper looks toward the merger of these technologies in making short range 6-18 h forecasts through the use of mesoscale NWP models. A short-range (2-18 h) mesoscale forecast system envisioned for the near future is described that includes four components: hydrodynamic numerical models, large-scale and mesoscale; satellites, polar orbiting for high latitudes and geostationary for low latitudes; mesoclimatology, derived in large part from satellite data; and special-purpose simple models and empirical relations. It is important that the components of the forecast system be developed in parallel rather than in series if the system is to be completed within five years. There is enough evidence to substantiate the revolution in the mesoscale weather prediction in the next five years.

Kreitzberg, C. W.↗

NASA NTRS1996

LET spectra measurements on LDEF: variations with shielding and location

LET spectra measurements made with passive plastic nuclear track detectors (PNTDs) were found to depend on detector orientation, shielding and experiment location. LET spectra were measured at several locations on LDEF as part of the P0006 LETSME experiment (Benton and Parnell, 1984), the P0004 Seeds in Space experiment (Parks and Alston, 1984), the A00l5 Free Flyer Biostacks and the M0004 Fiber Optics Data Link experiment (Taylor, 1984). Locations included the east, west and Earth sides of the LDEF satellite. The LET spectra measured with PNTDs deviated significantly from calculations, especially for high LET particles (LET infinity H2O > or = 100 keV/micrometer). At high LETs, short-range inelastic secondary particles produced by trapped proton interactions with the nuclei of the detector were found to be the principal contributor to LET spectra. At lower LETs, the spectra appeared to be due to short-range, inelastic and stopping primary protons, with primary GCR particles making a smaller contribution. The dependence of LET spectra on detector orientation and shielding was studied using the four orthogonal stacks in the P0006 experiment. Both measurements of total track density and LET spectra showed a greater number of particles arriving from the direction of space than from Earth. Measurements of LET spectra in CR-39 PNTD on the east (leading) and west (trailing) sides of LDEF showed a higher rate of production at the west side. This was caused by a larger flux of trapped protons on the west side as predicted by the east/west trapped proton anisotropy in the South Atlantic Anomaly (SAA). Track density measured in CR-39 PNTDs increased as a function of shielding depth in the detector stack. A similar measurement made in a thick stack of CR-39 interspersed with layers of Al and exposed to 154 MeV protons at a ground-based accelerator showed a similar result, indicating that a significant fraction of the particle events counted were from secondaries and that the total cross-section for production of proton-induced secondaries increased as the energy of primary protons attenuated. Little change was seen in either total differential or integral LET spectra as a function of shielding depth, indicating that the increase in cross section with decreasing proton energy affected mostly the shorter range secondary components. Similarity in the slopes of LET spectra from ground-based proton exposures and the A00l5 LET spectra showed that modeling of a monoenergetic proton beam transported through a 1-D geometry was a useful first step in modeling the production of secondary particles by trapped protons in the SAA.

long duration↗

NASA NTRS1977

Severe weather prediction studies

A numerical forecast model is described which uses three-dimensional primitive equations to predict the evolution of the wind, temperature and moisture fields along with the subsynoptic-scale convective activity. There are 15 vertical levels set on a longitude-latitude horizontal grid. In this study, the horizontal grid distance is 70 km (0.625 deg latitude and 0.816 deg longitude at 40 deg N) and the time step is 90 sec. Orography is included and terrain coordinates are adopted. The forecast model is used to test two tornado-producing storms with very different synoptic structures. A 12 hr forecast is carried out for both cases. The rms errors of the forecast indicate much smaller errors in the middle troposphere than in the lower troposphere. The results demonstrate that a rather fine-mesh limited-area numerical model is capable of providing a valuable short-range forecast of the circulation and the mesoscale precipitation features.

Chang, C.-B.↗

NASA NTRS1995

Boson localization and universality in YBa2Cu(3-x)M(x)O(7-delta)

We consider a two component mixture of charged fermions on neutralizing background with all sign combinations and arbitrarily small mass ratios. In the two impurity limit for the heavier component we show that the pair forms a bound state for all charge combinations. In the lowest order approximation we derive a closed form expression Veff(r) for the binding potential which has short-range repulsion followed by attraction. In the classical limit, when the mass of embedded particles is large m2 much greater than m, we can calculate from Veff(r) also the cohesive energy E and the bond length R of a metallic crystal such as lithium. The lowest order result is R = 3.1 A, E = -0.9 eV, not entirely different from the experimental result for lithium metal. The same interaction for two holes on a parabolic band with m2 greater than m gives the quantum mechanical bound state which one may interpret as a boson or local pair in the case of high-Te and heavy fermion superconductors. We also show that for compounds of the type YBa2Cu(3 - x)M(x)O(7 - delta) one can understand most of the experimental results for the superconducting and normal states with a single temperature dependent boson breaking function f(T) for each impurity content x governing the decay of bosons into pairing fermions. In the normal state f(T) turns out to be a linear, universal function, independent of the impurity content I and the oxygen content delta. We predict with universality a depression in Tc(x) with slight down bending in agreement with experiment. As a natural consequence of the model the bosons become localized slightly above Tc due to the Wigner crystallization, enhanced with lattice local field minima. The holes remain delocalized with a linearly increasing concentration in the normal state, thus explaining the rising Hall density. The boson localization temperature T(sub BL) shows up as a minimum in the Hall density R(sub ab)(exp -1). We also give explanation for very recently observed scaling of temperature dependent Hall effect in La(2 - x)Sr(x)CuO4.

Kallio, A.↗

NASA NTRS1975

CO2 laser doppler systems for the measurement of atmospheric winds and turbulence

Two CO2 laser doppler systems developed by NASA and some results obtained with them are discussed. A continuous wave, monostatic system for short-range wind measurement is described, and direct comparisons between the data obtained with it and with a cup-anemometer/wind vane system and a hot-wire anemometer show excellent agreement between the systems. Improvements being made in three CW, CO2 laser doppler systems, including a filter bank for optimized signal processing and a versatile scanning system, are noted. A pulsed CO2 system for measuring clear air turbulence is described, and results of test performance on board a Convair 990 are presented. It is noted that while the system was able to measure air speed and turbulence, the range of its transmitter-atmosphere-receiver was lower than predicted, and a difference of about 20 to 30 dB existed between the actual and theoretical turbulence measurements. Factors that may account for this loss are listed.

Huffaker, R. M.↗

NASA NTRS1981

Determining economic benefits of satellite data in short-range forecasting

The chances of enhanced short term weather predictions and economic benefits from the use of GOES satellite data were examined. Results for a meteorological consulting firm before and after the introduction of GOES data were chosen as the method, and monetary benefits were selected as the measure. Services were provided for use by road and street departments, commodities dealers, and marine clients of the consulting firm. The Man-computer Interactive Data Access Program (McIDAS) was employed to furnish 1/2 hour visual or IR imagery for remote access. The commodities clients reconnected the GOES real-time imagery once the study was completed, while the consulting firm, which was personnel and not equipment intensive, did not. Further development of the flexibility of access to the GOES data and improvements in the projected grids are indicated.

Suchman, D.↗

NASA NTRS1992

Monthly means of selected climate variables for 1985 - 1989

Meteorologists are accustomed to viewing instantaneous weather maps, since these contain the most relevant information for the task of producing short-range weather forecasts. Climatologists, on the other hand, tend to deal with long-term means, which portray the average climate. The recent emphasis on dynamical extended-range forecasting and, in particular measuring and predicting short term climate change makes it important that we become accustomed to looking at variations on monthly and longer time scales. A convenient toll for researchers to familiarize themselves with the variability which occurs in selected parameters on these time scales is provided. The format of the document was chosen to help facilitate the intercomparison of various parameters and highlight the year-to-year variability in monthly means.

Schubert, S.↗

NASA NTRS1994

Escarpment evolution on high-elevation rifted margins: Insights derived from a surface processes model that combines diffusion, advection and reaction

Experiments with a surface processes model of large-scale (1-1000 km) long-term (1-100 m.y.) erosional denudation are used to establish the controls on the evolution of a model escarpment that is related to the rifting of a continent. The mdoel describes changes in topographic form as a result of sumultaneous short- and long-range mass transport representing hillslope (diffusive) processes and fluvial transport (advection), repsectively. Fluvial entrainment is modeled as a first-order kinetic reaction which reflects the erodibility of the substrate, and therefore the fluvial system is not necessarily carrying at capacity. One dimensional and planform models demonstrate that the principal controls on the evolution of an initially steep model escarpment are (1) antecedent topography/drainage; (2) the timesale (or equivalently a length scale) in the fluvial entrainment reaction; (3) the flexural response of the lithosphere to denudation; and (4) the relative efficiencies of the short- and long-range transport processes. When rainfall and substrate lithology are uniform, a significant amount of discharge draining over the escarpment top causes it to degrade. Only when the top of the model escarpment coincides with a drainage divide can escarpment retreat occur for these conditions. An additional requirement for retreat of a model escarpment without decline is a long reaction time scale for fluvial entrainment. This corresponds to a substrate that is hard to detach by flucial erosion, and therefore to fluvial erosion that is not transport limited. Coninuous backtilting of an escarpment due ot flexural isostatic uplift in response to denudational unloading helps maintain the scarp top as a divide. It is essntial if the escarpment gradient is to be preserved during retreat in a uniform lithology. Low flexural rigidieties propote steep and slowly retreating escarpments. For given rainfall and substrate conditions, the morphology of a retraeating model escarpment is determined by the ratio of hte short-range diffusive and long range advective transport efficiencies. A low ration (which is interpreted to correspond to a more humid, temperate climate) produces a convex upper slope, and concave lower slope morphology and only major escarpments are predicted to preserve a high scarp gradient. Lithological contrasts in hte model produce more complex morphologies and predict the formation of scarps crowned by an erosionaly resistant caprock. However, resistant caprocks are not an essential requirement for model scarps to retreat. We conclude that the inferred controls and model behavior are both consistent with the present-day morphology of rifted continental margins and with modern conceptual models of landscape evolution.

Kooi, Henk↗