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30 records · Page 2
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Comparative analysis of nutrient concentrations in generalist and specialist tree species and soils, Manaus, Brazil

This dataset was collected near Manaus, Brazil, at ZF-2 site, inside the North-South transect plots from 20221011 to 20221020. Measurements were made on specialists and generalist tree species along topographic gradient (in upland high-clay content soils of plateaus and high sandy content and partially flooded soils of valleys). We selected nine species (with four replicates each, totaling 35 individuals) occurring in different topographic positions: three plateau specialists, three valley specialists, and three generalists, where leaf and trunk samples were collected from each individual, and soil samples for carbon and nutrient analysis and quantification. Three soil pits were opened around each sample tree, about one meter apart (total of 105 soil pits each 60-cm deep), where soil samples were collected at four depths: 0-5, 5-10, 10-30 and 30-50 cm. In each of the three pits around each tree, one single sample was taken at each depth and combined to obtain a composite sample per depth per individual tree (35 trees × 4 depths = 140 soil samples). The files “Plant_Nutrient_Concentrations_NS_Transect_Manaus.csv” and “Soil_Nutrient_Concentrations_NS_Transect_Manaus.csv” contain the nutrient concentration data from plant and soil material, respectively. Additionally, the file “Sample_Info.csv” contains details about each variable including units and data type. The file “Species_Info.csv” includes information about each sampled individual, such as species, family, diameter at the breast height (DBH), and more. The dataset is ready to be used in any programming language like python or R. This dataset was originally published on the NGEE Tropics Archive and is being mirrored on ESS-DIVE for long-term archival Acknowledgement: Funding for NGEE-Tropics data resources was provided by the U.S. Department of Energy Office of Science, Office of Biological and Environmental Research.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Accumulation of Soil Microbial Necromass Controlled by Microbe–Mineral Interactions

Soil organic matter (SOM) is a key reservoir for global carbon (C), supporting soil fertility and influencing greenhouse gas emissions. Microbial residues, composed of dead cells and cellular fragments, are major contributors to SOM formation. Yet, mechanisms by which minerals enhance the accumulation of microbial residues remain poorly understood. Here, we used 13 C-labeled glucose in a year-long incubation to trace microbial residue in sandy and silty soils. Across both soils, approximately 89% of retained microbial 13 C was recovered in the fine (<53 μm) mineral-associated organic matter (MAOM) pool. Within this pool, the light MAOM fraction, enriched in poorly crystalline Fe minerals, held 4.3 times more 13 C than the heavy, phyllosilicate-dominated MAOM fraction, despite accounting for only 17.2% of the total MAOM mass and 12.3% of the total soil mass. Along with 13 C enrichment, the light MAOM fraction showed greater abundance of N-containing groups, e.g., (amides and amino groups), indicative of microbial-derived compounds like proteins and amino sugars. Fe oxides in light MAOM from both soils were spatially dispersed. Microbial residue accumulation was greater in finer-textured silty soil. These findings demonstrate that mineral composition and texture jointly regulate microbial necromass accrual, highlighting light MAOM as a key pool for enhancing soil C storage.

13C isotope labeling↗
DOE OSTI2026

AmeriFlux FLUXNET-1F US-RC5 Moses Lake on-farm site

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-RC5 Moses Lake on-farm site. This is the FLUXNET version of the carbon flux data for the site US-RC5 Moses Lake on-farm site produced by applying the standard ONEFlux (1F) software. Site Description - The Moses Lake On-farm site operated 2013-2015 as part of a cluster of 5 towers (RC1 to RC5) operated for the Regional Approaches to Climate Change (REACCH) USDA-supported research project. The field was a half-circle irrigated plot with the irrigation pivot located on the edge of the field and the flux tower located next to the center of the pivot. The field was in wheat from tower establishment in June 2013 to harvest in August 2013. A cover crop of arugula and mustard was grown from August to October 2013. Potatoes were grown April to August 2014 and wheat (a spring cultivar planted in fall) was grown October 2014 to June 2015. Soils are coarse sandy loam mollisols in the Timmerman series. The site topography is flat.

Chi, Jinshu [The Hong Kong University of Science a↗
DOE OSTI2026

Automated point dendrometer, soil moisture and temperature, and meteorological variables datasets, Oct 2024 – Nov 2025, G.A. Pearson Natural Area, Flagstaff, AZ, USA

This data package includes parsed, cleaned, and calibrated data from 48 TOMST automated point dendrometers, 48 TOMST 15 cm soil moisture sensors, and 12 TOMST 30 cm soil moisture sensors. The point dendrometers were cleaned with the “dendRoAnalyst” package in RStudio. The soil sensors were cleaned and calibrated for volumetric water content (VWC) with the “myClim” package in RStudio using the soil texture of the site (sandy clay loam). Additionally, this data package also includes raw data from 2 METER weather stations. Dendrometers and soil sensors have both their sensor ID, as well as the ID for the specific tree they were instrumented on at the G.A. Pearson Natural Area (GPNA) site and their experimental group. The purpose of these data is to understand how ponderosa pine trees in restored (thinned and burned) vs. unrestored (no treatment) areas are responding to drought and seasonal precipitation. These data use radial growth and soil moisture data to answer the following question: how are active season length, growth on different time scales (weekly, monthly, seasonally, and annually), growth during dry periods and after precipitation events, and environmental and biological drivers of radial growth different between restored versus unrestored areas?

Air temperature↗
DOE OSTI2025

GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics

Data package for Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon This data is published under a CC0 license. The authors encourage data reuse and request attribution by referencing the below citations for the data packages and associated manuscript. Please cite as: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics. [Data Set] PNNL DataHub. doi: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. MSV000097435: GLBRC soil yearlong incubation 13C-SIP-Lipidomics [Data Set] MassIVE. doi:10.25345/C57659T3K Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon. In Prep This data package consists of compound-specific 13C SIP-lipidomics data from a yearlong tracer incubation experiment designed to investigate microbial lipid persistence in switchgrass bioenergy crop soils. In order to explore how lipid structure may modulate the persistence of C in soil lipids, we leveraged soils from two sites (Michigan - sandy texture, Wisconsin - silty texture) operated by the U.S. Department of Energy-funded Great Lakes Bioenergy Research Center (GLBRC). These sites had comparable climates, identical management practices, but contrasting soil textures, allowing us to assess the variability of lipid accrual or degradation in soils as well as provide insight regarding the degree to which edaphic properties may regulate the retention of soil lipids. Untargeted lipidomics analyses were performed to identify 13C-labeled lipids in the soil microbiome after long-term incubation. Soils were supplemented with 100 micrograms glucose per gram dry soil (99 atom % 13C or natural abundance for paired control) and incubated; samples were collected two months and one year after glucose addition. Lipid extracts (MPLEx) were analyzed by LC-MS/MS and identified using LIQUID. Calculation of isotopic enrichment of lipids was performed by targeted approach using TarMet to quantify lipid isotopologues and IsoCorrectoR to correct for natural abundance isotopes. Contents: Data package contents reported here are the first version and contain downstream analysis files for the raw LC-MS mass spectrometry files (.mzXML) deposited at the MassIVE database repository under accession MSV000097435 (80 experimental runs; 5.85 GB) | MassIVE DOI: 10.25345/C57659T3K. Support files include the additional data download 'Read Me' file containing data descriptor information. Reported data download contents are structured for compliance with project data sharing guidelines, community standards initiatives, and sponsor stakeholder policies supporting FAIR data principles. Data processing software, analysis tools, and data workflows are listed below corresponding to the host repository long-term location. Available Data Downloads (0.3 GB): "GLBRC soil yearlong incubation 13C-SIP-Lipidomics_readme.txt" - 'Read Me' data package content file (txt) "GLBRC_DataPackage_analysis files" - Data processing files (Rmd) and saved intermediate data processing outputs (rds, csv, xlsx) "GLBRC_13C_lipidomics_dataset.xlsx" - processed data in tabular format (xlsx) Linked Software: LIQUID LC-MS Analysis Software | 10.5281/zenodo.6459462 Lipid Mini-On Software Tools | 10.5281/zenodo.1492803 pmartR Omics Statistical Software | 10.5281/zenodo.6108667 xcms (v4.3.3) TarMet (v1.1.1) IsoCorrectoR (1.24.0) Funding Acknowledgments: This research was supported by an Early Career Research Program award funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research (OBER) Genomic Science program under FWP 68292, FWP 07880 and EMSL Exploratory Research Project 51095. A portion of this work was performed in the William R. Wiley Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by OBER and located at Pacific Northwest National Laboratory (PNNL). PNNL is a multi-program national laboratory operated by Battelle for the DOE under Contract DE-AC05-76RLO1830.

Rempfert, Kaitlin R [Pacific Northwest National La↗
DOE OSTI2026

AmeriFlux US-ABc Archbold grazed improved pasture

This is the AmeriFlux version of the carbon flux data for the site US-ABc Archbold grazed improved pasture. Site Description - This site is an improved pasture, regularly fertilized (nitrogen, ~26 kg/ha every 2 years) and limed (~229 kg/ha every 5 years, and historically received phosphorus fertilizer until 1986; . The soil type is a fine sandy Spodosol

Bernacchi, Carl [Global Change and Photosynthesis ↗
DOE OSTI2026

AmeriFlux US-ABd Archbold ungrazed improved pasture

This is the AmeriFlux version of the carbon flux data for the site US-ABd Archbold ungrazed improved pasture. Site Description - This site is an improved pasture, regularly fertilized (nitrogen, ~26 kg/ha every 2 years) and limed (~229 kg/ha every 5 years; and historically received phosphorus fertilizer until 1986; . The soil type is a fine sandy Spodosol . Grazing was removed in 2013-2015 for the duration of the study

Bernacchi, Carl [Global Change and Photosynthesis ↗
DOE OSTI2026

AmeriFlux FLUXNET-1F US-ABc Archbold grazed improved pasture

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-ABc Archbold grazed improved pasture. This is the FLUXNET version of the carbon flux data for the site US-ABc Archbold grazed improved pasture produced by applying the standard ONEFlux (1F) software. Site Description - This site is an improved pasture, regularly fertilized (nitrogen, ~26 kg/ha every 2 years) and limed (~229 kg/ha every 5 years, and historically received phosphorus fertilizer until 1986; . The soil type is a fine sandy Spodosol

Bernacchi, Carl [Global Change and Photosynthesis ↗
DOE OSTI2026

AmeriFlux FLUXNET-1F US-ABd Archbold ungrazed improved pasture

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-ABd Archbold ungrazed improved pasture. This is the FLUXNET version of the carbon flux data for the site US-ABd Archbold ungrazed improved pasture produced by applying the standard ONEFlux (1F) software. Site Description - This site is an improved pasture, regularly fertilized (nitrogen, ~26 kg/ha every 2 years) and limed (~229 kg/ha every 5 years; and historically received phosphorus fertilizer until 1986; . The soil type is a fine sandy Spodosol . Grazing was removed in 2013-2015 for the duration of the study

Bernacchi, Carl [Global Change and Photosynthesis ↗
DOE OSTI2025

AmeriFlux CA-TPA Ontario Turkey Point Observatory Agricultural Site

This is the AmeriFlux version of the carbon flux data for the site CA-TPA Ontario Turkey Point Observatory Agricultural Site. Site Description - This agricultural flux tower site is located about 15 km southwest of Simcoe in southern Ontario, Canada. It was planted with corn (Zea mays) in 2020 and 2021, sweet potato (Ipomoea batatas) in 2022 and tobacco (Nicotiana tabacum) in 2023. The site is part of Turkey Point Environmental Observatory (TPEO). The establishment of the agricultural site has allowed TPEO to become representative of the major biomes in the Great Lakes region, encompassing coniferous and deciduous forests, as well as agricultural crops. The soil at this agricultural site is well-drained fine sandy loam. The area has a humid continental climate and has one of the longest-growing seasons in Canada with at least 150–160 frost-free days in a year.

Arain, M. Altaf [McMaster University]↗
DOE OSTI2026

AmeriFlux FLUXNET-1F CA-TPA Ontario Turkey Point Observatory Agricultural Site

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-TPA Ontario Turkey Point Observatory Agricultural Site. This is the FLUXNET version of the carbon flux data for the site CA-TPA Ontario Turkey Point Observatory Agricultural Site produced by applying the standard ONEFlux (1F) software. Site Description - This agricultural flux tower site is located about 15 km southwest of Simcoe in southern Ontario, Canada. It was planted with corn (Zea mays) in 2020 and 2021, sweet potato (Ipomoea batatas) in 2022 and tobacco (Nicotiana tabacum) in 2023. The site is part of Turkey Point Environmental Observatory (TPEO). The establishment of the agricultural site has allowed TPEO to become representative of the major biomes in the Great Lakes region, encompassing coniferous and deciduous forests, as well as agricultural crops. The soil at this agricultural site is well-drained fine sandy loam. The area has a humid continental climate and has one of the longest-growing seasons in Canada with at least 150–160 frost-free days in a year.

Arain, M. Altaf [McMaster University]↗
DOE OSTI2026

AmeriFlux FLUXNET-1F US-CLF Cole Farm

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-CLF Cole Farm. This is the FLUXNET version of the carbon flux data for the site US-CLF Cole Farm produced by applying the standard ONEFlux (1F) software. Site Description - The Cole Farm catchment (0.65km2) is located ~ 4 km southwest of the Shale Hills site, draining orthogonally to a syncline axis of the Wills Creek Formation, a calcareous shale containing interbedded siltstone, sandstone, shaly limestone, and dolomite. Even though the farm adopted no-till practices in the 1970s, the axial channel of Cole Farm flows over a thick (>2.5 m) package of sediment in the valley floor. Soils range in texture from silty clay at the ridge top to sandy loam in the valley floor. Data was collected and funded by the Critical Zone Observatory Network.

Davis, Kenneth J. [Department of Meteorology, Eart↗