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Origin of replication discovery for environmentally isolated Pantoea strain enables expression of heterologous proteins, pathways and products

Leveraging predicted origin sequences from a previously characterized groundwater plasmidome, we constructed a barcoded plasmid library to screen for previously unknown origins. Testing this library against a panel of representative bacterial strains led to the identification of 3 previously unknown origins that replicate in gram-negative bacteria not previously associated with these origin sequences. Experimental validation confirmed that a plasmid bearing origin 6911 as the sole origin could replicate with a copy number of 9 (±2) in Pantoea sp. MT58, a fast growing and metal tolerant, environmentally important bacterium. Plasmids based on this new origin were used to express the reporter protein GFP, and non-native metabolite pathways for the natural product indigoidine and the terpenoid compound isoprenol. Functional previously unknown origins of replication in such non-model organisms can expand the toolkit for genetic manipulations of both model and less-studied bacteria.

molecular biology

Estimates of the maximum time required to originate life

Fossils of the oldest microorganisms exist in 3.5 billion year old rocks and there is indirect evidence that life may have existed 3.8 billion years ago (3.8 Ga). Impacts able to destroy life or interrupt prebiotic chemistry may have occurred after 3.5 Ga. If large impactors vaporized the oceans, sterilized the planets, and interfered with the origination of life, life must have originated in the time interval between these impacts which increased with geologic time. Therefore, the maximum time required for the origination of life is the time that occurred between sterilizing impacts just before 3.8 Ga or 3.5 Ga, depending upon when life first appeared on earth. If life first originated 3.5 Ga, and impacts with kinetic energies between 2 x 10 the the 34th and 2 x 10 to the 35th were able to vaporize the oceans, using the most probable impact flux, it is found that the maximum time required to originate life would have been 67 to 133 million years (My). If life originated 3.8 Ga, the maximum time to originate life was 2.5 to 11 My. Using a more conservative estimate for the flux of impacting objects before 3.8 Ga, a maximum time of 25 My was found for the same range of impactor kinetic energies. The impact model suggests that it is possible that life may have originated more than once.

Oberbeck, Verne R.

The Origins Space Telescope

The Origins Space Telescope will trace the history of our origins from the time dust and heavy elements permanently altered the cosmic landscape to present-day life. How did galaxies evolve from the earliest galactic systems to those found in the universe today? How do habitable planets form? How common are life-bearing worlds? To answer these alluring questions, Origins will operate at mid- and far-infrared wavelengths and offer powerful spectroscopic instruments and sensitivity three orders of magnitude better than that of Herschel, the largest telescope flown in space to date. After a 3 ½ year study, the Origins Science and Technology Definition Team will recommend to the Decadal Survey a concept for Origins with a 5.9-m diameter telescope cryo cooled to 4.5 K and equipped with three scientific instruments. A mid-infrared instrument (MISC-T) will measure the spectra of transiting exoplanets in the 2.8 – 20 μm wavelength range and offer unprecedented sensitivity, enabling definitive biosignature detections. The Far-IR Imager Polarimeter (FIP) will be able to survey thousands of square degrees with broadband imaging at 50 and 250 μm. The Origins Survey Spectrometer (OSS) will cover wavelengths from 25 – 588 μm, make wide-area and deep spectroscopic surveys with spectral resolving power R ~ 300, and pointed observations at R ~ 40,000 and 300,000 with selectable instrument modes. Origins was designed to minimize complexity. The telescope has a Spitzer-like architecture and requires very few deployments after launch. The cryo-thermal system design leverages JWST technology and experience. A combination of current-state-of-the-art cryocoolers and next-generation detector technology will enable Origins’ natural background limited sensitivity.

Leisawitz, D.

The Origins Space Telescope: Baseline Mission Concept

The Origins Space Telescope will trace the history of our origins from the time dust and heavy elements permanently altered the cosmic landscape to present-day life. How did galaxies evolve from the earliest galactic systems to those found in the Universe today? How do habitable planets form? How common are life-bearing worlds? To answer these alluring questions, Origins will operate atmid- and far-infrared (IR) wavelengths and offer powerful spectroscopic instruments and sensitivity three orders of magnitude better than that of the Herschel Space Observatory, the largest telescope flown in space to date. We describe the baseline concept for Origins recommended to the 2020 US Decadal Survey in Astronomy and Astrophysics. The baseline design includes a 5.9-m diameter telescope cryocooled to 4.5 K and equipped with three scientific instruments. A mid-infrared instrument (Mid-Infrared Spectrometer and Camera Transit spectrometer) will measure the spectra of transiting exoplanets in the 2.8 to 20 μm wavelength range and offer unprecedented spectrophotometric precision, enabling definitive exoplanet biosignature detections. The far-IR imager polarimeter will be able to survey thousands of square degrees with broadband imaging at 50 and 250 μm. The Origins Survey Spectrometer will cover wavelengths from 25 to 588 μm, making wide-area and deep spectroscopic surveys with spectral resolving power R ∼ 300, and pointed observations at R ∼ 40;000 and 300,000 with selectable instrument modes. Origins was designed to minimize complexity. The architecture is similar to that of the Spitzer Space Telescope and requires very few deployments after launch, while the cryothermal system design leverages James Webb Space Telescope technology and experience. A combination of current-state-of-the-art cryocoolers and next-generation detector technology will enable Origins’ natural background-limited sensitivity.

David Leisawitz

Optical Design of the Origins Space Telescope

This paper discusses the optical design of the Origins Space Telescope. Origins is one of four large missions under study in preparation for the 2020 Decadal Survey in Astronomy and Astrophysics. Sensitive to the mid- and far-infrared spectrum (between 2.8 and 588 μm), Origins sets out to answer a number of important scientific questions by addressing NASA’s three key science goals in astrophysics. The Origins telescope has a 5.9 m diameter primary mirror and operates at f/14. The large on-axis primary consists of 18 ‘keystone’ segments of two different prescriptions arranged in two annuli (six inner and twelve outer segments) that together form a circular aperture in the goal of achieving a symmetric point spread function. To accommodate the 46 x 15 arcminute full field of view of the telescope at the design wavelength of λ = 30 μm, a three-mirror anastigmat configuration is used. The design is diffraction-limited across its instruments’ fields of view. A brief discussion of each of the three baselined instruments within the Instrument Accommodation Module (IAM) is presented: 1) Origins Survey Spectrometer (OSS), 2) Mid-infrared Spectrometer, Camera (MISC) transit spectrometer channel, and 3) Far-Infrared Polarimeter/Imager (FIP). In addition, the up scope options for the observatory are laid out as well including a fourth instrument: the Heterodyne Receiver for Origins (HERO).

Corsetti, James A.

Optical Design of the Origins Space Telescope

The optical design is presented for the Origins Space Telescope, one of four large missions under study in preparation for the 2020 Decadal Survey in Astronomy and Astrophysics is presented. Sensitive to the mid- and far-infrared spectrum (between 2.8 and 588 µm) and set to launch in approximately 2035, Origins sets out to answer a number of important scientific questions by addressing NASA's three key science goals in astrophysics: How does the universe work?, How did we get here, and Are we alone? To do so, Origins seeks to answer three main questions: 1) How do galaxies form stars, build up metals, and grow their central supermassive black holes from reionization to today? 2) How do the conditions for habitability develop during the process of planet formation? 3) Do planets orbiting M-dwarf stars support life?The Origins telescope has a 5.9 m diameter primary mirror and operates at f/14. The large on-axis primary consists of 18 'keystone' segments of two different prescriptions arranged in two annuli (six inner and twelve outer segments) that together form a circular aperture in the goal of achieving a symmetric point spread function. To simplify the design, the telescope will be launched with both the primary mirror segments and the secondary mirror already deployed. To accommodate the 46 x 15 arcminute full field of view of the telescope at the design wavelength of = 30 µm, a three-mirror anastigmat configuration is used. The design is diffraction-limited across its instruments' fields of view. A brief discussion of each of the three baselined instruments within the Instrument Accommodation Module (IAM) is presented: 1) Origins Survey Spectrometer (OSS), 2) Mid-infrared Spectrometer, Camera (MISC) transit spectrometer channel, and 3) Far-Infrared Polarimeter/Imager (FIP). In addition, the upscope options for the observatory are laid out as well, including a fourth instrument: the Heterodyne Receiver for Origins (HERO).

Howard, Joseph

Optical Design of the Origins Space Telescope

This paper discusses the optical design of the Origins Space Telescope. Origins is one of four large missions under study in preparation for the 2020 Decadal Survey in Astronomy and Astrophysics. Sensitive to the mid- and far-infrared spectrum (between 2.8 and 588 μm), Origins sets out to answer a number of important scientific questions by addressing NASA’s three key science goals in astrophysics. The Origins telescope has a 5.9 m diameter primary mirror and operates at f/14. The large on-axis primary consists of 18 ‘keystone’ segments of two different prescriptions arranged in two annuli (six inner and twelve outer segments) that together form a circular aperture in the goal of achieving a symmetric point spread function. To accommodate the 46 x 15 arcminute full field of view of the telescope at the design wavelength of λ = 30 μm, a three-mirror anastigmat configuration is used. The design is diffraction-limited across its instruments’ fields of view. A brief discussion of each of the three baselined instruments within the Instrument Accommodation Module (IAM) is presented: 1) Origins Survey Spectrometer (OSS), 2) Mid-infrared Spectrometer, Camera (MISC) transit spectrometer channel, and 3) Far-Infrared Polarimeter/Imager (FIP). In addition, the upscope options for the observatory are laid out as well including a fourth instrument: the Heterodyne Receiver for Origins (HERO).

James A Corsetti

Air Mass Origin in the Arctic and its Response to Future Warming

We present the first climatology of air mass origin in the Arctic in terms of rigorously defined air mass fractions that partition air according to where it last contacted the planetary boundary layer (PBL). Results from a present-day climate integration of the GEOSCCM general circulation model reveal that the Arctic lower troposphere below 700 mb is dominated year round by air whose last PBL contact occurred poleward of 60degN, (Arctic air, or air of Arctic origin). By comparison, approx. 63% of the Arctic troposphere above 700 mb originates in the NH midlatitude PBL, (midlatitude air). Although seasonal changes in the total fraction of midlatitude air are small, there are dramatic changes in where that air last contacted the PBL, especially above 700 mb. Specifically, during winter air in the Arctic originates preferentially over the oceans, approx. 26% in the East Pacific, and approx. 20% in the Atlantic PBL. By comparison, during summer air in the Arctic last contacted the midlatitude PBL primarily over land, overwhelmingly so in Asia (approx. 40 %) and, to a lesser extent, in North America (approx. 24%). Seasonal changes in air-mass origin are interpreted in terms of seasonal variations in the large-scale ventilation of the midlatitude boundary layer and lower troposphere, namely changes in the midlatitude tropospheric jet and associated transient eddies during winter and large scale convective motions over midlatitudes during summer.

tropospheric transport

The Origins Space Telescope Integration and Testing

This paper describes the plans, flows, key facilities, test beds, pathfinders, simulators and ground support equipment that could be used to fully integrate, functionally test and qualify the Origins Space Telescope (Origins). The Origins Observatory consists of the Spacecraft Bus Module (SBM) and the Cryogenic Payload Module (CPM), which comprises the telescope and three science instruments. The telescope is a Three Mirror Anastigmat (TMA) and is composed of four mirrors: three with optical power (the elliptical primary, hyperbolic secondary, and elliptical tertiary mirrors) and a flat field-steering mirror (FSM). The three science instruments spanning the wavelength range 2.8 to 588 μm provide the powerful new spectroscopic and imaging capabilities required to achieve the scientific objectives. The Origins Survey Spectrometer (OSS) uses six gratings in parallel to take multi-beam spectra simultaneously across the 25 to 588 μm window through long slits enabling deep 3D extra-galactic surveys. The Far-IR Imager/Polarimeter (FIP) provides imaging and polarimetric measurement capabilities at 50 and 250 μm. Its fast mapping enables rapid follow-up of transient or variable sources and efficient monitoring campaigns. The Mid-Infrared Spectrometer (MISC-T) provides spectroscopy simultaneously over 2.8 to 20 μm with exquisite stability and precision (<5 ppm between 2.8 to 10 μm, <20 ppm between 11 to 20 μm). All the instruments are delivered for Integration and Test fully qualified and calibrated. The Integration and Test program implemented at each level of assembly is discussed as well as the separation of thermal vacuum testing between the hot and cold zones of the Observatory. Portions of this manuscript appear in the Origins Study Final Report.

Origins

Research in Theoretical Particle Physics: Neutrino Masses and The Origin of CP-Violation

The main goal of this project was to investigate the theories of neutrino masses at the low scale and the origin of CP-violation in physics beyond the Standard Model. The origin of neutrino masses is one of the most pressing issues in particle physics. In this proposal, we investigated the theories for neutrino masses based on local total lepton number. In these theories anomaly cancellation predicts the existence of extra fermions with lepton number, and one of them is a good dark matter (DM) candidate. The cosmological constraints on the DM relic density implies that the lepton number symmetry breaking scale must be below the multi-TeV scale. Therefore, one can hope to test the origin of neutrino masses in current or future experiments. We investigated in great detail the anomaly cancellation in these gauge theories, study the different mechanisms for neutrino masses, study the predictions for direct and indirect dark matter experiments. Since these theories predict new sources of CP violation, we investigated the predictions for the electric dipole moments (EDM). The Higgs decays and the different signatures at the Large Hadron Collider were investigated in great detail. Finally, we studied the possible baryogenesis mechanisms in these theories in agreement with the EDM, DM and collider constraints. The origin of CP violation in the Standard Model is unknown. In this proposal, we investigated the simplest mechanisms for spontaneous CP-violation to explain the CP-violation in the CKM matrix and the value of the QCD vacuum angle. We discussed the Nelson-Barr mechanism in gauge theories predicting vector-like quarks from anomaly cancellation such as theories for local baryon number. We discussed the Bento-Branco-Parada mechanism in gauge theories to explain the CP-Violation in the CKM matrix. We will investigate models with two Higgs doublets in the context of the minimal theory for quark-lepton unification. We will show the non-decoupling effects in the Higgs sector, the main constraints coming from flavour violating processes when the Yukawa couplings are related by the gauge symmetry in theories for quark-lepton unification. We will investigate the predictions for electric dipole moments in these theories. The possibility to have successful baryogenesis was investigated. Finally, we investigated the relation between CP-violation in the quark and leptonic sectors. The future results from these studies could help us to understand two main issues in physics beyond the Standard Model: The Origin of Neutrino Masses and CP-violation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

On the origin of comets

Physico-chemical processes leading to the dynamic formation and physical evolution of comets are reviewed in relationship to the various theories that propose solar origins, protoplanetary origins, planetary origins and interstellar origins. Evidence points to the origins of comets by the growth and agglomeration of small particles from gas and dust at very low temperatures at undetermined regions in space.

Mendis, A.

Solar gases in meteorites - The origin of chondrites and C1 carbonaceous chondrites

Evidence suggesting that chondritic meteorites broke off from parent bodies in earth-crossing orbits is considered. It is suggested that ordinary chondrites have an asteroidal origin, and the possibility that C1 chondrites have a cometary origin is examined. Indications of heavy shock and reheating among L and H chondrites provides support for an asteroidal origin, while the Apollo and Amor objects are too small to be unfragmented asteroids, as proposed in the Anders theory of the origin of gas-rich meteorites. Events associated with the megaregolith are discussed in the framework of the proposed cometary origin of C1 chondrites.

Heymann, D.

Are comets connected to the origin of life

Possible connections between comets and the origin of life on earth are discussed. The orbital evolution of comets and their origin are considered within a framework for the origin of the solar system, with particular attention given to the origin of the biosphere, and the origin of the Oort cloud. Evidence suggesting that cometary nuclei are undifferentiated throughout is considered, and a model of the average composition of a mean new comet is obtained from observational data which is similar to that of an interstellar frost. The chemistry of the model composition giving rise to the species observed in cometary spectra is considered, as well as the relations of cometary to cosmic abundances of oxygen, carbon and sulfur. The characteristics of possible sites for prebiotic chemistry, including interstellar clouds, the protosolar nebula, comets in the Oort cloud, periodic comets and the primitive earth, are examined, and a possible role of comets in bringing the interstellar prebiotic chemistry to earth is suggested.

Delsemme, A. H.

Impact origin of the Sudbury structure: Evolution of a theory

This paper reviews the origin, development, and present status of the widely accepted theory, proposed by Robert S. Dietz in 1962, that the Sudbury structure was formed by meteoritic or asteroidal impact. The impact theory for the origin of the Sudbury structure seems supported by a nearly conclusive body of evidence. However, even assuming an impact origin to be correct, at least three major questions require further study: (1) the original size and shape of the crater, before tectonic deformation and erosion; (2) the source of the melt now forming the Sudbury Igneous Complex; and (3) the degree, if any, to which the Ni-Cu-platinum group elements are meteoritic. The history of the impact theory illustrates several under-appreciated aspects of scientific research: (1) the importance of cross-fertilization between space research and terrestrial geology; (2) the role of the outsider in stimulating thinking by insiders; (3) the value of small science, at least in the initial stages of an investigation, Dietz's first field work having been at his own expense; and (4) the value of analogies (here, between the Sudbury Igneous Complex and the maria), which although incorrect in major aspects, may trigger research on totally new lines. Finally, the Sudbury story illustrates the totally unpredictable and, by implication, unplannable nature of basic research, in that insight to the origin of the world's then-greatest Ni deposit came from the study of tektites and the Moon.

Lowman, Paul D., Jr.

Original Size and Shape of the Sudbury Structure

This paper presents new evidence bearing on the original size and shape of the Sudbury impact structure. Current opinion is almost unanimous that the structure is a multiring basin with an original diameter of about 200 km and a circular shape that has since been shortened in a northwest-southeast direction by Penokean deformation Evidence for this interpretation, collected chiefly from north of the Sudbury Igneous Complex (SIC), includes supposed outer rings on Landsat imagery, distant occurrences of "Sudbury breccia" (generally defined as pseudotachylite), shatter cone occurrences, and outliers of Huronian sedimentary rock thought to be down-faulted rings. New data from imaging radar and field work north of the SIC, however, contradict this evidence. Radar imagery shows no signs of the supposed outer rings mapped by earlier workers on Landsat images. The most prominent ring has been found to be a chance alignment of two independent fracture sets. Radar imagery from the CCRS Convair 580, with look direction almost normal to the north rim of the SIC, shows no evidence of the rings despite strong look azimuth highlighting. Radar imagery has shown many unmapped diabase dikes north of the SIC. Several exposures of supposed Sudbury breccia are associated with these dikes or with Nipissing diabase intrusions, in some cases actually inside the dikes or directly continuous with them. They appear to be igneous intrusion breccias with no relation to impact. Shock-wave interaction at lithologic contacts cannot be invoked for most of these, because they are part of a northwest trending swarm cutting the SIC in the North Range, and hence too young for an impact origin. Similar diabase-related breccias and pseudotachylite-like veins have been found far outside the Sudbury area between Chapleau and Thessalon. Shatter cones north of the SIC are few and poorly developed, perhaps due to the coarse-grained Footwall rock, and cannot be considered a continuous zone analogous to their occurrence on the South Range in Huronian rocks. Supposed down-faulted outliers of Huronian rocks north of the SIC show no consistent relation to faulting, and the Huronian/Archean contact is locally erosional. Radar imagery and field-checking confirm Rousell's conclusion that the North Range has undergone little or no Penokean deformation. T'his implies that the plan view outline of the crater (floor of the SIC) is original. Extrapolation of the North Range as part of a circular arc leads to an impossibly great diameter. It is concluded that although Penokean deformation largely accounts for the structure's shape, the original crater was not circular and was much smaller than 200 km across.

Lowman, P. D., Jr.

On the Origin of Polar Vortex Air

The existence of the multi-year HALOE CH4 data set, together with some comparisons of forward with back trajectory calculations which we have carried out, has motivated us to reexamine the question of polar vortex descent. Three-dimensional diabatic trajectory calculations have been carried out for the seven month fall to spring period in both the northern hemisphere (NH) and southern hemisphere (SH) polar stratosphere for the years 1992-1999. These computations are compared to fixed descent computations where the parcels were fixed at their latitude-longitude locations and allowed to descend without circulating. The forward trajectory computed descent is always less than the fixed descent due to horizontal parcel motions and variations in heating rates with latitude and longitude. Although the forward calculations estimate the maximum amount of descent that can occur, they do not necessarily indicate the actual origin of springtime vortex air. This is because more equator-ward air can be entrained within the vortex during its formation. To examine the origin of the springtime vortex air, the trajectory model was run backward for seven months from spring to fall. The back trajectories show a complex distribution of parcels in which one population originates in the upper stratosphere and mesosphere and experiences considerable descent in the polar regions, while the remaining parcels originate at lower altitudes of the middle and lower stratosphere and are mixed into the polar regions during vortex formation without experiencing as much vertical transport. The amount of descent experienced by the first population shows little variability from year to year, while the computed descent and mixing of the remaining parcels show considerable interannual variability due to the varying polar meteorology. Because of this complex parcel distribution it is not meaningful to speak of a net amount of descent experienced over the entire winter period. Since the back trajectories indicate that much of the air can come from lower altitudes than would be implied by the forward calculations, using a comparison between pre-winter and post-winter tracer profiles to estimate the amount of descent over this period will give erroneous descent amounts. In order to evaluate the computed descent, spring methane amounts were computed by mapping HALOE fall observations onto the final latitude-altitude locations of the back trajectories. These locations indicate the origin of the spring vortex air. The agreement between the computed means and the spring HALOE means is generally within 0.1-0.2 ppmv in the NH and 0.1-0.4 ppmv in the SH.

Rosenfield, J. E.

The origin of mesoderm in phoronids

Descriptive studies of phoronid development have concluded that the mesoderm of these animals originates from the endoderm during gastrulation. This interpretation has been tested by labeling one blastomere of 4- through 16-cell embryos and examining the position and germ layers occupied by the labeled clones of cells in the larva. No 2 injections gave rise to identical clones of cells, suggesting that the cleavage program does not generate cells of unique identity and that cell fates are established at later developmental time points. In many cases, a relatively large sector composed of ectodermal cells was labeled. When these labeled cells were adjacent to the mouth or anus of the larva, muscle and mesenchyme cells originated from the labeled clones. Under these circumstances, nerve cells also originated from these labeled sectors. These labeling studies also showed that endodermal cells can give rise to mesodermal and neural cells. These results suggest that nerve and muscle cells are induced to form at ectodermal-endodermal boundaries from both germ layers. These marking experiments also confirmed the observation that nerve cells originate both from the apical organ and the trunk region and show for the first time that the intestine originates by ingression of posterior ectoderm.

NASA Discipline Evolutionary Biology

Impacts and the origin of life

As living creatures, all of us have some interest in the question of how life originated. To some, the question is more religious than scientific; nonetheless, a small but dedicated group of scientists spend their careers trying to answer it from a rational standpoint. Logically, the question can be broken down into the three standard divisions of any mystery: When did life originate? Where did it originate? And how did it originate? Of these three sub-questions the last is by far the most difficult and I will make no attempt to address it here. I will however take a personal look at the two easier parts of the problem. In particular, I will outline my current view of the physical environment of the early Earth, and I will try to show how observations of other solar system bodies, especially our own Moon, provide clues as to when and where life could have originated.

Review