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At least 37 records · Page 2
All sourcesNASA NTRSDOE OSTI
NASA NTRS2011

The Analysis of the Patterns of Radiation-Induced DNA Damage Foci by a Stochastic Monte Carlo Model of DNA Double Strand Breaks Induction by Heavy Ions and Image Segmentation Software

To create a generalized mechanistic model of DNA damage in human cells that will generate analytical and image data corresponding to experimentally observed DNA damage foci and will help to improve the experimental foci yields by simulating spatial foci patterns and resolving problems with quantitative image analysis. Material and Methods: The analysis of patterns of RIFs (radiation-induced foci) produced by low- and high-LET (linear energy transfer) radiation was conducted by using a Monte Carlo model that combines the heavy ion track structure with characteristics of the human genome on the level of chromosomes. The foci patterns were also simulated in the maximum projection plane for flat nuclei. Some data analysis was done with the help of image segmentation software that identifies individual classes of RIFs and colocolized RIFs, which is of importance to some experimental assays that assign DNA damage a dual phosphorescent signal. Results: The model predicts the spatial and genomic distributions of DNA DSBs (double strand breaks) and associated RIFs in a human cell nucleus for a particular dose of either low- or high-LET radiation. We used the model to do analyses for different irradiation scenarios. In the beam-parallel-to-the-disk-of-a-flattened-nucleus scenario we found that the foci appeared to be merged due to their high density, while, in the perpendicular-beam scenario, the foci appeared as one bright spot per hit. The statistics and spatial distribution of regions of densely arranged foci, termed DNA foci chains, were predicted numerically using this model. Another analysis was done to evaluate the number of ion hits per nucleus, which were visible from streaks of closely located foci. In another analysis, our image segmentaiton software determined foci yields directly from images with single-class or colocolized foci. Conclusions: We showed that DSB clustering needs to be taken into account to determine the true DNA damage foci yield, which helps to determine the DSB yield. Using the model analysis, a researcher can refine the DSB yield per nucleus per particle. We showed that purely geometric artifacts, present in the experimental images, can be analytically resolved with the model, and that the quantization of track hits and DSB yields can be provided to the experimentalists who use enumeration of radiation-induced foci in immunofluorescence experiments using proteins that detect DNA damage. An automated image segmentaiton software can prove useful in a faster and more precise object counting for colocolized foci images.

Ponomarev, Artem↗
NASA NTRS1992

Monte Carlo modeling of the resurfacing of Venus

We have developed a three-dimensional model of venusian resurfacing that employs Monte Carlo simulations of both impact cratering and volcanism. The model simulates the production of craters on Venus by using the observed mass distributions of Earth- and Venus-crossing asteroids and comets. Lava flows are modeled by an energy minimization technique to simulate the effects of local topography on the shape and extent of flows. The model is run under a wide range of assumptions regarding the scale and time evolution of volcanism on Venus. Regions of the parameter space that result in impact crater distributions and modifications that are currently observed will be explored to place limits on the possible volcanic resurfacing history of Venus.

Bullock, M. A.↗
NASA NTRS2012

Monte Carlo Model Insights into the Lunar Sodium Exosphere

Sodium in the lunar exosphere is released from the lunar regolith by several mechanisms. These mechanisms include photon stimulated desorption (PSD), impact vaporization, electron stimulated desorption, and ion sputtering. Usually, PSD dominates; however, transient events can temporarily enhance other release mechanisms so that they are dominant. Examples of transient events include meteor showers and coronal mass ejections. The interaction between sodium and the regolith is important in determining the density and spatial distribution of sodium in the lunar exosphere. The temperature at which sodium sticks to the surface is one factor. In addition, the amount of thermal accommodation during the encounter between the sodium atom and the surface affects the exospheric distribution. Finally, the fraction of particles that are stuck when the surface is cold that are rereleased when the surface warms up also affects the exospheric density. In [1], we showed the "ambient" sodium exosphere from Monte Carlo modeling with a fixed source rate and fixed surface interaction parameters. We compared the enhancement when a CME passes the Moon to the ambient conditions. Here, we compare model results to data in order to determine the source rates and surface interaction parameters that provide the best fit of the model to the data.

Hurley, Dana M.↗
NASA NTRS1976

Large scale cratering of the lunar highlands - Some Monte Carlo model considerations

In an attempt to understand the scale and intensity of the moon's early, large scale meteoritic bombardment, a Monte Carlo computer model simulated the effects of all lunar craters greater than 800 m in diameter, for example, the number of times and depths specific fractions of the entire lunar surface were cratered. The model used observed crater size frequencies and crater-geometries compatible with the suggestions of Pike (1974) and Dence (1973); it simulated bombardment histories up to a factor of 10 more intense than those reflected by the present-day crater number density of the lunar highlands. For the present-day cratering record the model yields the following: approximately 25% of the entire lunar surface has not been cratered deeper than 100 m; 50% may have been cratered to 2-3 km depth; less than 5% of the surface has been cratered deeper than about 15 km. A typical highland site has suffered 1-2 impacts. Corresponding values for more intense bombardment histories are also presented, though it must remain uncertain what the absolute intensity of the moon's early meteorite bombardment was.

Hoerz, F.↗
NASA NTRS1978

Monte Carlo modeling of exospheric bodies - Mercury

In order to study the interaction with the surface, a Monte Carlo program is developed to determine the distribution with altitude as well as the global distribution of density at the surface in a single operation. The analysis presented shows that the appropriate source distribution should be Maxwell-Boltzmann flux if the particles in the distribution are to be treated as components of flux. Monte Carlo calculations with a Maxwell-Boltzmann flux source are compared with Mariner 10 UV spectrometer data. Results indicate that the presently operating models are not capable of fitting the observed Mercury exosphere. It is suggested that an atmosphere calculated with a barometric source distribution is suitable for more realistic future exospheric models.

Smith, G. R.↗
NASA NTRS1992

The use of plasma ashers and Monte Carlo modeling for the projection of atomic oxygen durability of protected polymers in low Earth orbit

The results of ground laboratory and in-space exposure of polymeric materials to atomic oxygen has enabled the development of a Monte Carlo computational model which simulates the oxidation processes of both environments. The cost effective projection of long-term low-Earth-orbital durability of protected polymeric materials such as SiO(x)-coated polyimide Kapton photovoltaic array blankets will require ground-based testing to assure power system reliability. Although silicon dioxide thin film protective coatings can greatly extend the useful life of polymeric materials in ground-based testing, the projection of in-space durability based on these results can be made more reliable through the use of modeling which simulates the mechanistic properties of atomic oxygen interaction, and replicates test results in both environments. Techniques to project long-term performance of protected materials, such as the Space Station Freedom solar array blankets, are developed based on ground laboratory experiments, in-space experiments, and computational modeling.

Banks, Bruce A.↗
NASA NTRS1988

Monte Carlo modeling of the net effects of coma scattering and thermal reradiation on the energy input to cometary nucleus

A Monte Carlo simulation method is presented that can, to an accuracy of a few percent, calculate the effects of a dusty coma on the total energy input to the cometary nucleus. This method treats nonconservative nonisotropic scattering, as well as the reflection from the nucleus surface. Results are presented as a function of the optical thickness of the dust column in the sun-comet axis. The total energy input to the nucleus appears to be only weakly dependent on the opacity of the coma, the radial distribution of the dust, or the details of the extinction processes.

Salo, H.↗
NASA NTRS1992

A Monte Carlo model of polarized thermal emission from particulate planetary surfaces

Direct emission from individual grains and multiple scattering between regolith particles are encompassed by the present model of particulate planetary surface thermal emission, whose randomly positioned spherical grains are large relative to the emission's wavelength scale. A Monte Carlo ray-tracing method is used to calculate the spectral and directional emissivity of the surface and the polarization of the emitted radiation, for 7-16 micron wavelengths. The effects of roughness at the scale of individual grains and scattering are separated to elucidate how each affects the emitted radiation. Implications of these results for planetary remote sensing are discussed.

Henderson, Bradley G.↗
NASA NTRS1989

Monte Carlo models and analysis of galactic disk gamma-ray burst distributions

Gamma-ray bursts are transient astronomical phenomena which have no quiescent counterparts in any region of the electromagnetic spectrum. Although temporal and spectral properties indicate that these events are likely energetic, their unknown spatial distribution complicates astrophysical interpretation. Monte Carlo samples of gamma-ray burst sources are created which belong to Galactic disk populations. Spatial analysis techniques are used to compare these samples to the observed distribution. From this, both quantitative and qualitative conclusions are drawn concerning allowed luminosity and spatial distributions of the actual sample. Although the Burst and Transient Source Experiment (BATSE) experiment on Gamma Ray Observatory (GRO) will significantly improve knowledge of the gamma-ray burst source spatial characteristics within only a few months of launch, the analysis techniques described herein will not be superceded. Rather, they may be used with BATSE results to obtain detailed information about both the luminosity and spatial distributions of the sources.

Hakkila, Jon↗
NASA NTRS1987

Monte Carlo modeling of ionospheric oxygen acceleration by cyclotron resonance with broad-band electromagnetic turbulence

It is demonstrated that cyclotron resonance with observed electric field fluctuations is responsible for production of the oxygen-ion conics that are observed by the Dynamics Explorer 1 satellite in the central plasma-sheet region of the earth's magnetosphere. The ion-velocity distribution is described by a quasi-linear diffusion equation which is solved by the Monte Carlo technique. The acceleration produced by the observed wave spectrum agrees well with the ion observations, in both form and magnitude. This is believed to represent the first successful comparison of an observed conic with any theoretical model.

Retterer, John M.↗
NASA NTRS1988

Monte Carlo modeling of large-scale ion-conic generation

Cyclotron resonance with observed electric field fluctuations is demonstrated to be responsible for production of the oxygen ion conics that are observed by the Dynamics Explorer 1 satellite in the central plasma sheet region of the earth's auroral zone. The ion velocity distribution is described by a quasi-linear diffusion equation which is solved using the Monte Carlo technique. The acceleration produced by the observed wave spectrum agrees well with the ion observations, in both form and magnitude.

Retterer, J. M.↗
NASA NTRSDate not supplied

Multi-Model Monte Carlo Estimators for Trajectory Simulation

Predicting landing radius and other quantities of interest (QoI) for entry, descent, andlanding (EDL) applications requires a viable uncertainty propagation method for quantifying the impact of uncertainties in aerodynamics, atmosphere, mass properties, etc. While standard Monte Carlo (MC) simulation is the de facto standard for producing robust and unbiasedstatistical estimators, it is often infeasible for expensive, high-fidelity models. Low-fidelity models are commonly constructed to replace the high-fidelity model in MC simulation for computational speedup, but at the expense of accuracy and unbiasedness. Emerging multi-model MC methods are bridging this gap by combining predictions from two or more modelsof varying fidelity and computational cost for efficient and unbiased uncertainty propagation.This works establishes a proof of concept for using multi-model MC to increase the speed and precision of trajectory simulation for EDL. It is shown that combining a high-fidelity EDL model with low-fidelity models (e.g., data-driven, reduced physics) in this manner has the potential to yield significant efficiency and accuracy gains for certain EDL QoIs versusa standard MC approach. Moreover, the unbiasedness of multi-model MC predictions ishighlighted by showing increased accuracy versus an approach that leverages a low-fidelity model alone.

James E Warner↗
NASA NTRS1989

Monte-Carlo modeling of polar wind photoelectron distributions with anomalous heat flux

In situ measurements above the polar cap by the DE satellites show asymmetric field-aligned electron velocity distributions in the photoelectron energy range 5-60 eV. The formation of these anisotropic distributions is described by a collisional kinetic equation that includes the effects of Coulomb collisions (via a Fokker-Planck operator), those of a parallel electric field, and the magnetic mirror effects of the geomagnetic field. This equation is solved using a Monte Carlo simulation method. The simulation illustrates the formation of the portion of the observed electron distributions originating in the ionosphere and makes it possible to evaluate the significance of the suprathermal electrons at higher altitude. Both observations and calculations indicate that these electrons possess an energy flux which, by its effect on the polar-wind electric field, may influence the dynamics of the polar-wind outflow.

Yasseen, F.↗
NASA NTRSDate not supplied

Fast and Precise Trajectory Simulation for Entry, Descent, and Landing Using A Multi-Model Monte Carlo Approach

Predicting landing radius and other quantities of interest (QoI) for entry, descent, and landing (EDL) applications requires a viable uncertainty propagation method for quantifying the impact of uncertainties in wind pattern variations, atmospheric uncertainties, etc. While standard MC simulation is the defacto standard for providing robust and unbiased predictions,it is often infeasible for expensive, high-fidelity EDL models. Low-fidelity models are commonly constructed to replace the high-fidelity model in MC simulation for computational speedup,but at the expense of accuracy and unbiasedness. Emerging multi-model MC methods are bridging this gap by combining predictions from two or more models of varying fidelity and computational cost for efficient and unbiased uncertainty propagation. This work explores the use of multi-model MC for increasing the speed and precision of trajectory simulation for EDL. It is shown that combining a high-fidelity EDL model with low-fidelity models (e.g,data-driven, reduced physics) yields substantial computational speedup versus standard MCwith only the high-fidelity model. Moreover, the unbiasedness of multi-model MC predictions is highlighted by showing increased accuracy versus an approach that leverages a low-fidelity surrogate model alone.

James E. Warner↗
NASA NTRS2009

A Monte-Carlo Model for the Formation of Radiation-induced Chromosomal Aberrations

Purpose: To simulate radiation-induced chromosome aberrations in mammalian cells (e.g., rings, translocations, and dicentrics) and to calculate their frequency distributions following exposure to DNA double strand breaks (DSBs) produced by high-LET ions. Methods: The interphase genome was assumed to be comprised of a collection of 2 kbp rigid-block monomers following the random-walk geometry. Additional details for the modeling of chromosomal structure, such as chromosomal domains and chromosomal loops, were included. A radial energy profile for heavy ion tracks was used to simulate the high-LET pattern of induced DSBs. The induced DSB pattern depended on the ion charge and kinetic energy, but always corresponded to the DSB yield of 25 DSBs/cell/Gy. The sum of all energy contributions from Poisson-distributed particle tracks was taken to account for all possible one-track and multi-track effects. The relevant output of the model was DNA fragments produced by DSBs. The DSBs, or breakpoints, were defined by (x, y, z, l) positions, where x, y, z were the Euclidian coordinates of a DSB, and where l was the relative position along the genome. Results: The code was used to carry out Monte Carlo simulations for DSB rejoinings at low doses. The resulting fragments were analyzed to estimate the frequencies of specific types of chromosomal aberrations. Histograms for relative frequencies of chromosomal aberrations and P.D.F.s (probability density functions) of a given aberration type were produced. The relative frequency of dicentrics to rings was compared to empirical data to calibrate rejoining probabilities. Of particular interest was the predicted distribution of ring sizes, irrespective of their frequencies relative to other aberrations. Simulated ring sizes were . 4 kbp, which are far too small to be observed experimentally (i.e., by microscopy) but which, nevertheless, are conjectured to exist. Other aberrations, for example, inversions, translocations, as well as multi-centrics were also recorded. Conclusion: High-LET DNA damage affects the frequencies of chromosomal aberrations. The ratio of rings to dicentrics is correct for the genomic size cut-offs corresponding to available experimental data. The present work predicts a relative abundance of small rings following irradiation by heavy ions.

Ponomarev, Artem L.↗
NASA NTRS2011

The Effects of Surface Roughness on the NEAR XRS Elemental Results: Monte-Carlo Modeling

The objective of the NEAR-Shoemaker X-ray Gamma-Ray Spec1roscopy ("XGRS") investigation was to determine the elemental composition of the near-Earth asteroid 433 Eros. The X-ray Spectrometer (XRS) system measured the characteristic fluorescence of six major elements (Mg, Al, Si, S, Ca, Fe) in the 1-10 keV energy range excited by the interaction of solar X-rays with the upper 100 microns of the surface of 433 Eros. Various investigators, using both laboratory experiments and computer simulations have established that X-ray fluorescent line ratios can be influenced by small-scale surface roughness at high incidence or emission angles. The effect on the line ratio is specific to the geometry, excitation spectrum, and composition involved, In general, however, the effect is only substantial for ratios of lines with a significant energy difference between them: Fe/Si and Ca/Si are much more likely to be affected than AI/Si or Mg/Si. We apply a Monte-Carlo code to the specific geometry and spectrum of a major NEAR XRS solar flare observation, using an H chondrite composition as the substrate. The seventeen most abundant elements were included in the composition model, from oxygen to titanium.

Lin, Lucy F.↗
NASA NTRSDate not supplied

Trajectory Simulation Using Multi Model Monte Carlo with Python (MXMCPy)

EDL (Entry, Descent and Landing) is the process from a vehicle approaching a surface to landing on it, such as a Mars rover approaching the planet before landing. POST2 (Program to Optimize Simulated Trajectories 2) is Langley’s primary EDL simulation tool and is used NASA-wide for simulations. POST2 can generate highly accurate results by running a precise, but time consuming, Monte Carlo (MC) simulation hundreds or thousands of times. Though POST2 can produce highly accurate results, it can take unrealistic time spans to generate these results, which has created a need to speed up the simulations. The new NASA software MXMCPy offers various ways to speed up the simulations while getting just as precise results. Instead of running high-precision POST2 simulations many times for traditional MC, MXMCPy can run fewer high-precision POST2 simulations and many less precise POST2 simulations and merge the results. MXMCPy contains 30+ different methods which will each suggest different allocations between model precision levels, which result in results of varying precision based on the POST2 simulation. I created Python and Bash code to automate the 5 steps of MXMCPy’s application to POST2. I also tested the precision of traditional Monte Carlo simulations to MXMCPy aided simulations and found that MXMCPy can achieve substantially more precise solutions at the same computer runtime. I learned Test Driven Development (TDD), a software programming workflow which involves writing computer-automated tests before writing the code which is being tested. These tests are ran every time the code is changed and they can find glitches in the code much quicker than a human can. This programming workflow saved me a lot of time because the automated tests could tell me exactly where the code had stopped working. I plan on using this software development method for future academic and professional software projects. I have greatly enjoyed my work at NASA, so I have been applying to NASA internships and Pathways positions. In addition, I plan on applying what I have learned about Test Driven Development to my computer science courses next semester

James Warner↗