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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 37 records · Page 2

Systematic Mapping of Bacterial CRISPRa Systems for Synergistic Gene Activation Reveals Antagonistic Effects

CRISPR gene activation (CRISPRa) tools have shown great promise for bacterial strain engineering but often require customization for each intended application. Our goal is to create generalizable CRISPRa tools that can overcome previous limitations of gene activation in bacteria. In eukaryotic cells, multiple activators can be combined for synergistic gene activation. To identify potential effectors for synergistic activation in bacteria, we systematically characterized bacterial activator proteins with a set of engineered synthetic promoters. We found that optimal target sites for different activators could vary by up to 200 bases in the region upstream of the transcription start site (TSS). These optimal target sites qualitatively matched previous reports for each activator, but the precise targeting rules varied between different promoters. By characterizing targeting rules in the same promoter context, we were able to test activator combinations with each effector positioned at its optimal target site. We did not find any activator combinations that produced synergistic activation, and we found that many combinations were antagonistic. Furthermore, this systematic investigation highlights fundamental mechanistic differences between bacterial and eukaryotic transcriptional activation systems and suggests that alternative strategies will be necessary for strong bacterial gene activation at arbitrary endogenous targets.

CRISPR activation

Integrated System for Methane Emissions Monitoring, Mapping, and Quantification

This report presents the work completed under the DOE iM4 project for the development of a methane emission monitoring system for detection, location, and quantification of methane in oil and gas industries. The task was divided into four main areas including: 1) Sensors and Input, 2) Centralized Cloud Information Center, 3) Algorithms, and 4) Testing and Validation. Task 1 focused on researching and developing an understanding of the current, or soon to be, available methane sensing technologies. Task 2 consisted of developing the architecture, selecting hardware, software and elements for the methane monitoring system. Task 3 focused on the algorithms used for the complex inverse model of going from measured methane signatures to the detection, localization, and quantification of sources that are desired. Finally, Task 4 focused on the methods of testing and validating the operation of the system. Attention was also given to the development method and cost breakdown of the system.

03 NATURAL GAS

Mapping Nitrogen Pathways in Organic Manure through GCAM

As the world has become more and more globalized, a need for a comprehensive and extensive modelling system that maps out the vast majority of processes and items around the world and can display how interdependent they are. Furthermore, such a model should be able to predict future processes and values such that it can guide scientific thinking and policy. This is where the importance of GCAM becomes so apparent. GCAM, the Global Change Analysis Model, that incorporates many different fields and can predict such a wide variety of processes. As the model expands and encompasses more fields and goes into greater detail, there is a need for previously incorporated processes to be further fleshed out. My project is dedicated to creating the organic nitrogen fertilizer pathway, such that there are two nitrogen fertilizer pathways, synthetic and organic (manure). Previously, only synthetic fertilizer was included, with all organic fertilizer (manure) being omitted from the model. Developing the synthetic path is relatively easy, as the process for creating synthetic fertilizer is an industrial process that has been perfected over decades, and thus has a very precise input/output coefficient of nitrogen, but determining that same coefficient for organic manure is much harder, because, well, digestion is not an industrial process, especially considering the many different types of animals have different processes, and a good amount of the manure they produce won’t be applied to the soil. I obtained data from the UN’s FAO on manure nitrogen applied to soil, and filled in the gaps and created many different visualizations to help comprehend the data. These findings will foster a greater understanding of nitrogen flows, which is crucial to fields like industrial agriculture, polluting runoff, and nitrifying bacteria and archaea in the soil.

54 ENVIRONMENTAL SCIENCES

Operation of helium sub-atmospheric multistage cryogenic centrifugal compressor trains: Part 2 – Transient modeling and pump-down path selection

Low-pressure conditions required for operation of helium cryogenic systems below the normal boiling point (i.e. 4.2 K) are established through a transient process, commonly referred to as ‘pump-down’. This process is defined as the transition from pressures above atmospheric conditions to the saturation pressure which corresponds to a specified operational temperature. The FRIB 2 K system consists of five cryogenic centrifugal compressors which are operated in series. Historically, the pump-down process path has been established through empirical methods and system operator experience. Investigation into the pump-down process at FRIB aimed to develop a pump-down methodology which relies on theoretical model predictions rather than empirically developed process paths. Ensuring stable operation during the pump-down process involved application of a centrifugal compressor performance prediction model, which is described in Part 1 of this paper. Compressor performance maps can be directly used to evaluate the stability of a selected pump-down path and anticipate the overall reliability of the selected path. In conjunction with the compressor performance maps, a system pressure model was developed to estimate the transient pressure response during the pump-down process. Lastly, an explicit equation was developed to establish a mass flow rate profile for the pump-down process. Implementation of the presented methodology (including the developed models) allows for the system operator to determine a continuous pump-down path which maintains compressor stability while conforming to overall system capabilities. Altogether, the methodology presented has resulted in simplification of transient pump-down operations and increased the reliability, stability and efficiency of the pump-down process.

Compressor train control

LUNA: LUT-Based Neural Architecture for Fast and Low-Cost Qubit Readout

Qubit readout is a critical operation in quantum computing systems, which maps the analog response of qubits into discrete classical states. Deep neural networks (DNNs) have recently emerged as a promising solution to improve readout accuracy . Prior hardware implementations of DNN-based readout are resource-intensive and suffer from high inference latency, limiting their practical use in low-latency decoding and quantum error correction (QEC) loops. This paper proposes LUNA, a fast and efficient superconducting qubit readout accelerator that combines low-cost integrator-based preprocessing with Look-Up Table (LUT) based neural networks for classification. The architecture uses simple integrators for dimensionality reduction with minimal hardware overhead, and employs LogicNets (DNNs synthesized into LUT logic) to drastically reduce resource usage while enabling ultra-low-latency inference. We integrate this with a differential evolution based exploration and optimization framework to identify high-quality design points. Our results show up to a 10.95x reduction in area and 30% lower latency with little to no loss in fidelity compared to the state-of-the-art. LUNA enables scalable, low-footprint, and high-speed qubit readout, supporting the development of larger and more reliable quantum computing systems.

Farooq, M. A. [Arizona State U., Tempe]

Tori, Klein bottles, and modulo 8 parity/time-reversal anomalies of 2+1d staggered fermions

We study the symmetries of lattice staggered fermions in 2+1d. Using the symmetries, we can place the system on any sheared torus or Klein bottle. These different backgrounds provide diagnostics of various ’t Hooft anomalies associated with the crystalline symmetries. We then compare the lattice model to its continuum limit. The symmetries of the lattice system are mapped in a nontrivial way to the symmetries of the continuum theories. Using this map, we match the ’t Hooft anomalies on the lattice and the continuum. Along the way, we develop a general formalism to study Hamiltonian lattice models on nontrivial, compact, flat spaces.

Algorithms and Theoretical Developments

Glacial to periglacial transition at the end of the last ice age in the subtropical semiarid Andes

Atmospheric warming and circulation reorganization at the end of the last ice age represent the most important climate change of the last 100,000 years and provide an opportunity to uncover how the southern subtropics cryosphere responded to strong changes in the global climate system. Extensive mapping and chronologic records on cryogenic landforms to better understand the association and interactions between glaciers and viscous creep of ice-rich permafrost landforms (rock glaciers) are widely missing in the region. In this paper, we reconstruct the geomorphic imprint of the Last Glacial Maximum (LGM) and the Termination I in the high Andes of the Río Limarí Basin (30–31°S) in the subtropical semiarid Andes of Chile. 74 new 10 Be surface exposure dating ages constrain the timing of glaciation, deglaciation, and glacial to periglacial transition. Glacial advances occurred first by 41.2 ± 0.6 – 35.0 ± 0.5 ka during Marine Isotope Stage 3, but probably earlier also; then, a second advance occurred during the global LGM between 24.2 ± 0.4 and 18.6 ± 0.2 ka. Deglaciation by 17.6 ± 0.2 ka left extensive hummocky moraines on the main valleys. Characteristic patterns of furrows and ridges typical of rock glaciers and solifluction superimposed on the LGM hummocky moraine indicate ice-rich permafrost in glacial deposits likely between 15.5 ± 0.3 and 13.6 ± 0.3 ka. We propose that moraines deposited by LGM debris-covered glaciers served as a niche for strong seasonal frost and permafrost creep, which substantially modified the original landforms. Finally, our results contribute to a better understanding of major transformations in an ice-rich high mountain area of the southern hemisphere where the interplay of temperature and precipitation changes drove glacial to periglacial transitions.

10Be surface exposure dating

Central transcriptional regulator controls photosynthetic growth and carbon storage in response to high light

Carbon capture and biochemical storage are some of the primary drivers of photosynthetic yield and productivity. To elucidate the mechanisms governing carbon allocation, we designed a photosynthetic light response test system for genetic and metabolic carbon assimilation tracking, using microalgae as simplified plant models. The systems biology mapping of high light-responsive photophysiology and carbon utilization dynamics between two variants of the same Picochlorum celeri species, TG1 and TG2 elucidated metabolic bottlenecks and transport rates of intermediates using instationary 13 C-fluxomics. Simultaneous global gene expression dynamics showed 73% of the annotated genes responding within one hour, elucidating a singular, diel-responsive transcription factor, closely related to the CCA1/LHY clock genes in plants, with significantly altered expression in TG2. Transgenic P. celeri TG1 cells expressing the TG2 CCA1/LHY gene, showed 15% increase in growth rates and 25% increase in storage carbohydrate content, supporting a coordinating regulatory function for a single transcription factor.

09 BIOMASS FUELS

Spatial variability in Arctic–boreal fire regimes influenced by environmental and human factors

Abstract Wildfire activity in Arctic and boreal regions is rapidly increasing, with severe consequences for climate and human health. Regional long-term variations in fire frequency and intensity characterize fire regimes. The spatial variability in Arctic–boreal fire regimes and their environmental and anthropogenic drivers, however, remain poorly understood. Here we present a fire tracking system to map the sub-daily evolution of all circumpolar Arctic–boreal fires between 2012 and 2023 using 375 m Visible Infrared Imaging Radiometer Suite active fire detections and the resulting dataset of the ignition time, location, size, duration, spread and intensity of individual fires. We use this dataset to classify the Arctic–boreal biomes into seven distinct ‘pyroregions’ with unique climatic and geographic environments. We find that these pyroregions exhibit varying responses to environmental drivers, with boreal North America, eastern Siberia and northern tundra regions showing the highest sensitivity to climate and lightning density. In addition, anthropogenic factors play an important role in influencing fire number and size, interacting with other factors. Understanding the spatial variability of fire regimes and its interconnected drivers in the Arctic–boreal domain is important for improving future predictions of fire activity and identifying areas at risk for extreme events.

Geology

Machine Learning for Mapping Multipactor Susceptibility in RF Systems: Capabilities and Generalization Constraints

Multipactor is a surface-driven electron avalanche phenomenon that degrades the performance and reliability of radio-frequency (RF) systems in particle accelerator and vacuum electronics applications. Multipactor behavior in a given device structure is conventionally assessed through susceptibility charts, which provide a parameter-space characterization of the instability. In this work, we assess the capabilities of machine-learning (ML) models to learn and predict such susceptibility charts and analyze the constraints governing their generalization across materials. Using a simulation-derived dataset spanning six distinct secondary-electron-yield material profiles in a canonical two-surface planar geometry, we train supervised regression models and artificial neural networks to predict the time-averaged electron growth rate, δavg, across the relevant parameter space. Model performance is evaluated using metrics that explicitly probe the structure of susceptibility charts, including Intersection over Union, Structural Similarity Index, and correlation analysis. Tree-based ensemble models outperform neural-network models in reconstructing susceptibility regions and in generalizing across material domains. Principal-component analysis reveals disjoint material feature distributions, indicating that the piecewise mode structure of multipactor susceptibility is difficult to represent with a single global model and that generalization is constrained by data coverage rather than by model complexity. An exhaustive reduced-coverage study further shows that sparse material-space coverage can yield mean performance in the same general range but producing large variability in the susceptibility-region overlap. These results clarify the capabilities of ML-based surrogate models for parameter-space characterization of multipactor discharge. They also provide guidance for their appropriate use in RF system design.

43 PARTICLE ACCELERATORS

MIND-MAC: Multi-Level In-memory Quasi Non-Destructive MAC Operation in Compact 2T-nC FeRAM for Efficient DNN Accelerator

We present MIND-MAC, a compact 2T-nC FeRAM architecture that performs multi-level, quasi-non-destructive in-memory multiply–accumulate (MAC) for deep neural networks. By exploiting voltage-controlled partial domain switching in MFM capacitors and read-transistor amplification, the cell stores multi-bit weights and gates bit-serial inputs to produce an accumulated current on shared lines. We combine TCAD-extracted parasitics with experimentally calibrated ferroelectric models in SPICE to validate device-/circuit-level behavior, and validate multi-level sensing and QNRO with measurements on a fabricated 2T-3C test vehicle. An analytical system model maps MIND-MAC to a 6-GB main-memory in-memory compute (IMC) architecture and benchmarks VGG13 inference in 61.08 ms at 964.99 mJ. Results indicate high density, reduced rewrite overhead, and energy efficiency, positioning 2T-nC FeRAM as a promising IMC candidate for next-generation AI hardware.

36 MATERIALS SCIENCE

Novel and Rugged Electromagnetic Wireless System for Long-Term Subsurface CO₂ Plume Monitoring and Saturation Mapping

Novel and rugged electromagnetic wireless system for long-term subsurface CO₂ plume monitoring and saturation mapping is a Phase I SBIR project led by Cyentech Consulting LLC to develop a permanently installed, outside-casing electromagnetic monitoring system for long-term carbon storage monitoring. The project addresses a major challenge in carbon capture and storage: the need for reliable, cable-free downhole monitoring that can detect CO₂ plume movement and saturation changes without compromising well integrity through casing perforations or external umbilical cables.

58 GEOSCIENCES

United States multi-sector land use and land cover base maps to support human and Earth system models

Abstract Earth System Models (ESMs) require current and future projections of land use and landcover change (LULC) to simulate land-atmospheric interactions and global biogeochemical cycles. Among the most utilized land systems in ESMs are the Community Land Model (CLM) and the Land-Use Harmonization 2 (LUH2) products. Regional studies also use these products by extending coarse projections to finer resolutions via downscaling or by using multisector dynamic (MSD) models. One such MSD model is the Global Change Analysis Model (GCAM), which has its own independent land module, but often relies on CLM or LUH2 as spatial inputs for its base years. However, this requires harmonization of thematically incongruent land systems at multiple spatial resolutions, leading to uncertainty and error propagation. To resolve these issues, we develop a thematically consistent LULC system for the conterminous United States adaptable to multiple MSD frameworks to support research at a regional level. Using empirically derived spatial products, we developed a series of base maps for multiple contemporary years of observation at a 30-m resolution that support flexibility and interchangeability amongst LUH2, CLM, and GCAM classification systems.

Oliver, Jay

Dynamics of McMillan mappings III. Symmetric map with mixed nonlinearity

This article extends the study of the dynamical properties of the symmetric McMillan map, emphasizing its utility in understanding and modeling complex nonlinear systems. Although the map features six parameters, we demonstrate that only two are irreducible: the linearized rotation number at the fixed point and a nonlinear parameter representing the ratio of terms in the biquadratic invariant. Through a detailed analysis, we classify regimes of stable motion, provide exact solutions to the mapping equations, and derive a canonical set of action-angle variables, offering analytical expressions for the rotation number and nonlinear tune shift. We further establish connections between general standard-form mappings and the symmetric McMillan map, using the area-preserving Hénon map and accelerator lattices with thin sextupole magnet as representative case studies. Our results show that, despite being a second-order approximation, the symmetric McMillan map provides a highly accurate depiction of dynamics across a wide range of system parameters, demonstrating its practical relevance in both theoretical and applied contexts.

43 PARTICLE ACCELERATORS