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Food Quality and Phytoplankton Community Composition in San Francisco Bay using Imaging Spectroscopy Data from the California HyspIRI Airborne Campaign

The San Francisco Bay (SFB) is the largest estuary on the west coast of the United States. It is an important transition zone between marine, freshwater, and inland terrestrial watersheds. The SFB is an important region for the cycling of nutrients and pollutants and it supports nurseries of ecologically and commercially important fisheries, including some threatened species. Phytoplankton community structure influences food web dynamics, and the taxonomy of the phytoplankton may be more important in determining primary food quality than environmental factors. As such, estimating food quality from phytoplankton community composition can be a robust tool to understand trophic transfer of energy. Recent work explores phytoplankton food quality in SFB through the use of microscopy and phytoplankton chemotaxonomy to evaluate how changes in phytoplankton composition may have influenced the recent trophic collapse of pelagic fishes in the northern part of the SFB. The objective of this study is to determine if the approach can also be applied to imaging spectroscopy data in order to quantify phytoplankton food quality from space. Imaging spectroscopy data of SFB from the Airborne VisibleInfrared Imaging Spectrometer (AVIRIS) was collected during the Hyperspectral Infrared (HyspIRI) Airborne Campaign in California (2013 2015) and used in this study. Estimates of ocean chlorophyll and phytoplankton community structure were determined using standard ocean chlorophyll algorithms and the PHYtoplankton Detection with Optics (PHYDOTax) algorithms. These were validated using in situ observations of phytoplankton composition using microscopic cell counts and phytoplankton chemotaxonomy from the US Geological Surveys ship surveys of the SFB. The findings from this study may inform the use of future high spectral resolution satellite sensors with the spatial resolution appropriate for coastal systems (e.g., HyspIRI) to assess food quality from space.

HyspIRI↗

Report on International Spaceborne Imaging Spectroscopy Technical Committee Calibration and Validation Workshop, National Environment Research Council Field Spectroscopy Facility, University of Edinburgh

Calibration and validation are fundamental for obtaining quantitative information from Earth Observation (EO) sensor data. Recognising this and the impending launch of at least five sensors in the next five years, the International Spaceborne Imaging Spectroscopy Technical Committee instigated a calibration and validation initiative. A workshop was conducted recently as part of this initiative with the objective of establishing a good practice framework for radiometric and spectral calibration and validation in support of spaceborne imaging spectroscopy missions. This paper presents the outcomes and recommendations for future work arising from the workshop.

Ong, C,↗

CubeX: A Compact X-Ray Telescope Enables Both X-Ray Fluorescence Imaging Spectroscopy and Pulsar Timing Based Navigation

This paper describes the benefits of a miniaturized X-ray telescope payload in the context of a lunar mission. The first part describes the payload in detail, the second part summarizes a small satellite mission concept that utilizes its compact form factor and performance. The CubeX instrument can be used for both X-ray fluorescence (XRF) imaging spectroscopy and X-ray pulsar timing based navigation (XNAV). Using our recent technological advances in X-ray optics and sensors, CubeX combines high angular resolution (<1 arcminutes) Miniature Wolter-I X-ray optics (MiXO) with a common focal plane consisting of high spectral resolution (<150 eV at 1 keV) CMOS X-ray sensors and a high timing resolution (< 1 usec) SDD X-ray sensor. This novel combination of the instruments enables both XRF measurements and XNAV operations without moving parts. The high angular resolution of the MiXO opens a wide range of orbital configurations for observation. Given that performance, the instrument has unprecedented small volume (~1×1×6U), mass (<6 kg), and power (<9W) requirements and opens a wide range of applications for a variety of targets and missions including NEOs and Martian moons. In this paper we illustrate one potential application for a lunar mission concept: The elemental composition of the Moon holds keys to understanding the origin and evolution of both the Moon and the Earth. X-ray fluorescence (XRF), induced either by solar X-ray flux or energetic ions, carries decisive signatures of surface elemental composition. X-ray observations, therefore, give a unique, powerful diagnostic tool for remotely determining elemental abundances including major rock forming elements such as Mg, Al, Na, Si, Fe, and Ca. Through high-resolution XRF imaging spectroscopy, CubeX searches for small patches of elusive lower crust and mantle material excavated within and around impact craters. CubeX identifies regional compositional variations and allows straightforward comparison of elemental distributions with the surface topography from LRO and the gravity data from GRAIL. The elemental compositions of the lower crust and the mantle are sensitive to the conditions of the giant impact which led to the Moon's formation and the subsequent lunar magma ocean (LMO), and thus they are key missing pieces in understanding the formation and early evolution of the Moon. In between XRF observations, CubeX also leverages the technology of high resolution X-ray imaging and time series measurements to conduct XNAV operations and evaluate their performance. Deep space navigation is a critical issue for small planetary missions. XNAV can enable low-cost autonomous deep-space navigation, and has the potential to greatly assist, or even outperform, NASA's Deep Space Network (DSN) or ESA's European Space Tracking (ESTRACK). CubeX is designed to perform sequential observations of 3-4 millisecond pulsars (MSPs) to solve the spacecraft trajectory for absolute navigation, and explore the remote sensing capability of XNAV. In the presented mission concept, the Moon's relative proximity enables a straightforward evaluation of the XNAV performance through DSN.

x-ray spectroscopy↗

Comparison of three methods for materials identification and mapping with imaging spectroscopy

We are comparing three methods of mapping analysis tools for imaging spectroscopy data. The purpose of this comparison is to understand the advantages and disadvantages of each algorithm so others would be better able to choose the best algorithm or combinations of algorithms for a particular problem. The three algorithms are: (1) the spectralfeature modified least squares mapping algorithm of Clark et al (1990, 1991): programs mbandmap and tricorder; (2) the Spectral Angle Mapper Algorithm(Boardman, 1993) found in the CU CSES SIPS package; and (3) the Expert System of Kruse et al. (1993). The comparison uses a ground-calibrated 1990 AVIRIS scene of 400 by 410 pixels over Cuprite, Nevada. Along with the test data set is a spectral library of 38 minerals. Each algorithm is tested with the same AVIRIS data set and spectral library. Field work has confirmed the presence of many of these minerals in the AVIRIS scene (Swayze et al. 1992).

Clark, Roger N.↗

Spectrally and Radiometrically Stable Wide-Band on Board Calibration Source for In-Flight Data Validation in Imaging Spectroscopy Applications

The quality of the quantitative spectral data collected by an imaging spectrometer instrument is critically dependent upon the accuracy of the spectral and radiometric calibration of the system. In order for the collected spectra to be scientifically useful, the calibration of the instrument must be precisely known not only prior to but during data collection. Thus, in addition to a rigorous in-lab calibration procedure, the airborne instruments designed and built by the NASA/JPL Imaging Spectroscopy Group incorporate an on board calibrator (OBC) system with the instrument to provide auxiliary in-use system calibration data. The output of the OBC source illuminates a target panel on the backside of the foreoptics shutter both before and after data collection. The OBC and in-lab calibration data sets are then used to validate and post-process the collected spectral image data. The resulting accuracy of the spectrometer output data is therefore integrally dependent upon the stability of the OBC source. In this paper we describe the design and application of the latest iteration of this novel device developed at NASA/JPL which integrates a halogen-cycle source with a precisely designed fiber coupling system and a fiber-based intensity monitoring feedback loop. The OBC source in this Airborne Testbed Spectrometer was run over a period of 15 hours while both the radiometric and spectral stabilities of the output were measured and demonstrated stability to within 1% of nominal.

visible spectrometers↗

Using airborne and DESIS imaging spectroscopy to map plant diversity across the largest contiguous tract of tallgrass prairie on earth

Grassland ecosystems are under threat globally, primarily due to land-use and land-cover changes that have adversely affected their biodiversity. Given the negative ecological impacts of biodiversity loss in grasslands, there is an urgent need for developing an operational biodiversity monitoring system that functions in these ecosystems. In this paper, we assessed the capability of airborne and spaceborne imaging spectroscopy (also known as hyperspectral imaging) to capture plant α-diversity in a large naturally-assembled grassland while considering the impact of common management practices, specifically prescribed fire. We collected a robust in-situ plant diversity data set, including species composition and percent cover from 2500 sampling points with different burn ages, from recently-burned to transitional and pre-prescribed fire at the Joseph H. Williams Tallgrass Prairie Preserve in Oklahoma, USA. We expressed in-situ plant α-diversity using the first three Hill numbers, including species richness (number of observed species in a plant community), exponential Shannon entropy index (hereafter Shannon diversity; effective number of common species, where species are weighed proportional to their percent cover), and inverse Simpson concentration index (hereafter Simpson diversity; effective number of dominant species, where more weight is given to dominant species) at four different plot sizes, including 60 m × 60 m, 120 m × 120 m, 180 m × 180 m, and 240 m × 240 m. We collected full-range airborne hyperspectral data with fine spatial resolution (1 m) and visible and near-infrared spaceborne hyperspectral data from DESIS sensor with coarse spatial resolution (30 m), and used the spectral diversity hypothesis—i.e., that the variability in spectral data is largely driven by plant diversity—to estimate α-diversity remotely. In recently-burned plots and those at the transitional stage, both airborne and spaceborne data were capable of capturing Simpson diversity—a metric that calculates the effective number of dominant species by emphasizing abundant species and discounting rare species—but not species richness or Shannon diversity. Further, neither airborne nor spaceborne hyperspectral data sets were capable of capturing plant α-diversity of 60 m × 60 m or 120 m × 120 m plots. Based on these results, three main findings emerged: (1) management practices influence grassland biodiversity patterns that can be remotely detected, (2) both fine- and coarse-resolution remotely-sensed data can detect the effective number of dominant species (e.g., Simpson diversity), and (3) attention should be given to site-specific plant diversity field data collection to appropriately interpret remote sensing results. Findings of this study indicate the feasibility of estimating Simpson diversity in naturally-assembled grasslands using forthcoming spaceborne imagers such as National Aeronautics and Space Administration's Surface Biology and Geology mission.

Hamed Gholizadeh↗

Imaging spectroscopy of the terrestrial environment; Proceedings of the Meeting, Orlando, FL, Apr. 16, 17, 1990

Topics presented include the evolution of the Airborne Visible/Infrared Imaging Spectrometer flight and ground data processing system, direct mineral identification with Geoscan Mk II Advanced Multispectral Scanner, a new approach to imaging spectroscopy, and a linear-wedge spectrometer. Also presented are the effects of moisture content and chemical composition on the near-infrared spectra of forest foliage, change detection in vegetation using 1989 AVIRIS data, and the inversion of high-spectral-resolution data.

Vane, Gregg↗

Simultaneous Characterization of Wildfire Smoke and Surface Properties With Imaging Spectroscopy During the FIREX-AQ Field Campaign

We introduce and evaluate an approach for the simultaneous retrieval of aerosol and surface properties from Airborne Visible/Infrared Imaging Spectrometer Classic (AVIRIS-C) data collected during wildfires. The joint National Aeronautics and Space Administration (NASA) National Oceanic and Atmospheric Administration Fire Influence on Regional to Global Environments and Air Quality field campaign took place in August 2019, and involved two aircraft and coordinated ground-based observations. The AVIRIS-C instrument acquired data from onboard NASA's high altitude ER-2 research aircraft, coincident in space and time with aerosol observations obtained from the Aerosol Robotic Network (AERONET) DRAGON mobile platform in the smoke plume downwind of the Williams Flats Fire in northern Washington in August 2019. Observations in this smoke plume were used to assess the capacity of optimal-estimation based retrievals to simultaneously estimate aerosol optical depth (AOD) and surface reflectance from Visible Shortwave Infrared (VSWIR) imaging spectroscopy. Radiative transfer modeling of the sensitivities in spectral information collected over smoke reveal the potential capacity of high spectral resolution retrievals to distinguish between sulfate and smoke aerosol models, as well as sensitivity to the aerosol size distribution. Comparison with ground-based AERONET observations demonstrates that AVIRIS-C retrievals of AOD compare favorably with direct sun AOD measurements. Our analyses suggest that spectral information collected from the full VSWIR spectral interval, not just the shortest wavelengths, enables accurate retrievals. We use this approach to continuously map both aerosols and surface reflectance at high spatial resolution across heterogeneous terrain, even under relatively high AOD conditions associated with wildfire smoke.

FIREX-AQ↗

The Earth Surface Mineral Dust Source Investigation: An Earth Science Imaging Spectroscopy Mission

The Earth Surface Mineral Dust Source Investigation, EMIT, is planned to operate from the International Space Station starting no earlier than the fall of 2021. EMIT will use visible to short wavelength infrared imaging spectroscopy to determine the mineral composition of the arid land dust source regions of the Earth to advance our knowledge of the radiative forcing effect of these aerosols. Mineral dust emitted into the atmosphere under high wind conditions is an element of the Earth system with many impacts to the Earth’s energy balance, atmosphere, surface, and oceans. The Earth’s mineral dust cycle with source, transport, and deposition phases are studied with advanced Earth System Models. Because the chemical composition, optical and surface properties of soil particles vary strongly with the mineral composition of the source, these models require knowledge of surface soil mineral dust source composition knowledge to accurately understand dust impacts on the Earth system now and in the future. At present, compositional knowledge of the Earth’s mineral dust source regions from existing data sets is uncertain as a result of limited measurements. EMIT will use spectroscopically derived surface mineral composition to update the prescribe boundary conditions for state-of-the-art Earth System Models. The EMIT-initialized models will be used to investigate the impact of direct radiative forcing in the Earth system that depends strongly on the composition of the mineral dust aerosols emitted into the atmosphere. These new measurements and related products will be used to address the EMIT science objectives and made available to the science community for additional investigations. An overview of the EMIT science, development, and mission is presented in this paper.

Green, Robert O.↗

Charge-coupled device imaging spectroscopy of Mars. II - Results and implications for Martian ferric mineralogy

Materials similar to nanophase ferric oxides are presently seen to dominate the spectral behavior of the Martian surface in the visible-to-near-IR, in view of imaging spectroscopic observations of Mars. Attention is accordingly given to models for the formation of hematite and other ferric minerals in both current terrestrial environments and in the current and past, possibly wetter Martian climate. It is noted that imaging spectroscopy is an ideal tool for high spatial resolution spacecraft and telescopic studies of the Martian surface.

Bell, James F., III↗

Compact Micro-Imaging Spectrometer (CMIS): Investigation of Imaging Spectroscopy and Its Application to Mars Geology and Astrobiology

Future missions to Mars will attempt to answer questions about Mars' geological and biological history. The goal of the CMIS project is to design, construct, and test a capable, multi-spectral micro-imaging spectrometer use in such missions. A breadboard instrument has been constructed with a micro-imaging camera and Several multi-wavelength LED illumination rings. Test samples have been chosen for their interest to spectroscopists, geologists and astrobiologists. Preliminary analysis has demonstrated the advantages of isotropic illumination and micro-imaging spectroscopy over spot spectroscopy.

Staten, Paul W.↗

Very High Spectral Resolution Imaging Spectroscopy: the Fluorescence Explorer (FLEX) Mission

The Fluorescence Explorer (FLEX) mission has been recently selected as the 8th Earth Explorer by the European Space Agency (ESA). It will be the first mission specifically designed to measure from space vegetation fluorescence emission, by making use of very high spectral resolution imaging spectroscopy techniques. Vegetation fluorescence is the best proxy to actual vegetation photosynthesis which can be measurable from space, allowing an improved quantification of vegetation carbon assimilation and vegetation stress conditions, thus having key relevance for global mapping of ecosystems dynamics and aspects related with agricultural production and food security. The FLEX mission carries the FLORIS spectrometer, with a spectral resolution in the range of 0.3 nm, and is designed to fly in tandem with Copernicus Sentinel-3, in order to provide all the necessary spectral / angular information to disentangle emitted fluorescence from reflected radiance, and to allow proper interpretation of the observed fluorescence spatial and temporal dynamics.

Moreno, Jose F.↗

Mapping invasive alien species in grassland ecosystems using airborne imaging spectroscopy and remotely observable vegetation functional traits

Lespedeza cuneata (sericea lespedeza; hereafter “sericea”) is an invasive species brought to the U.S. from East Asia in the 1890s to be used as forage. However, it has now become a growing ecological and economic threat in grasslands of several states in the U.S. southern Great Plains including Oklahoma, Kansas, Missouri, and Nebraska. Here, we demonstrate the capability of airborne imaging spectroscopy to map sericea in a large natural grassland within the Tallgrass Prairie Preserve, the largest protected tallgrass prairie in the world, located in northeastern Oklahoma. Through this research, we investigated which remotely observable vegetation functional traits (referring to biochemical, physiological, and structural traits) contribute to distinguishing sericea from cooccurring native species and whether we can detect sericea remotely through quantifying these functional traits using imaging spectroscopic data (also known as hyperspectral data). To achieve these objectives, full-range airborne hyperspectral data with spatial resolution of 1 m were collected from the study area in August 2020. In addition, a total of 12 vegetation functional traits were measured through field sampling for model development. We first identified functional traits that contributed to separating sericea from other species, and then used them in a classification model to detect sericea in our study site. We found total carotenoids (sum of neoxanthin, violaxanthin, antheraxanthin, zeaxanthin, and lutein), chlorophyll a + b (sum of chlorophyll a and chlorophyll b), total nitrogen, canopy height, potassium, and magnesium as the main functional traits contributing to the detection of sericea; an overall classification accuracy of approximately 94% was reported. However, the proposed approach overestimated sericea cover in species-rich plant communities. Overall, our findings demonstrated an essential role for airborne remote sensing in 1) direct mapping of invasive plants and 2) quantifying functional traits associated with success strategies of invasive species. Eventually, experiments like ours can aid in developing large-scale and science-driven management practices to both identify the current extent, and to control the spread of invasive species in grasslands and similar short-stature environments. This will not only improve management practices but will have major societal and economic benefits.

Hamed Gholizadeh↗

CubeX: A Compact X-Ray Telescope Enables Both X-Ray Fluorescence Imaging Spectroscopy and Pulsar Timing Based Navigation

This paper describes the miniaturized X-ray telescope payload, CubeX, in the context of a lunar mission. The first part describes the payload in detail, the second part summarizes a small satellite mission concept that utilizes its compact form factor and performance. This instrument can be used for both X-ray fluorescence (XRF) imaging spectroscopy and X-ray pulsar timing-based navigation (XNAV). It combines high angular resolution (<1 arcminutes) Miniature Wolter-I X-ray optics (MiXO) with a common focal plane consisting of high spectral resolution (<150 eV at 1 keV) CMOS X-ray sensors and a high timing resolution (< 1 μsec) SDD X-ray sensor. This novel combination of the instruments enables both XRF measurements and XNAV operations without moving parts, in a small form factor (~1×1×6U, <6 kg). In this paper we illustrate one potential application for a lunar mission concept: The elemental composition of the Moon holds keys to understanding the origin and evolution of both the Moon and the Earth. X-ray fluorescence (XRF), induced either by solar X-ray flux or energetic ions, carries decisive signatures of surface elemental composition. In between XRF observations, CubeX also leverages the technology of high resolution X-ray imaging and time series measurements to conduct XNAV operations and evaluate their performance.

Lunar Science↗

Cubex: A Compact X-Ray Telescope Enables Both X-Ray Fluorescence Imaging Spectroscopy and Pulsar Timing Based Navigation

This paper describes the miniaturized X-ray telescope payload, CubeX, in the context of a lunar mission. The first part describes the payload in detail, the second part summarizes a small satellite mission concept that utilizes its compact form factor and performance. This instrument can be used for both X-ray fluorescence (XRF) imaging spectroscopy and X-ray pulsar timing-based navigation (XNAV). It combines high angular resolution (<1 arcminutes) Miniature Wolter-I X-ray optics (MiXO) with a common focal plane consisting of high spectral resolution (<150 eV at 1 keV) CMOS X-ray sensors and a high timing resolution (< 1 Amp-microsecond) SDD X-ray sensor. This novel combination of the instruments enables both XRF measurements and XNAV operations without moving parts, in a small form factor (volume approximately 1 by 1 by 6 Units, and mass, < 6 kg). In this paper we illustrate one potential application for a lunar mission concept: The elemental composition of the Moon holds keys to understanding the origin and evolution of both the Moon and the Earth. X-ray fluorescence (XRF), induced either by solar X-ray flux or energetic ions, carries decisive signatures of surface elemental composition. In between XRF observations, CubeX also leverages the technology of high resolution X-ray imaging and time series measurements to conduct XNAV operations and evaluate their performance.

X-ray Fluorescence↗

Analysis of He I 1083 nm Imaging Spectroscopy Using a Spectral Standard

We develop a technique. for the analysis of He I 1083 nanometer spectra which addresses several difficulties through determination of a continuum background by comparison with a well calibrated standard and through removal of nearby solar and telluric blends by differential comparison to an average spectrum. The method is compared with earlier analysis of imaging spectroscopy obtained at the National Solar Observatory/Kitt Peak Vacuum Telescope (NSO/KPVT) with the NASA/NSO Spectromagnetograph (SPM). We examine distributions of Doppler velocity and line width as a function of central intensity for an active region, filament, quiet Sun, and coronal hole. For our example, we find that line widths and central intensity are oppositely correlated in a coronal hole and quiet Sun. Line widths are comparable to the quiet sun in the active region, are systematically lower in the filament, and extend to higher values in the coronal hole. Outward velocities of approximately equal to 2 to 4 kilometers per second are typically observed in the coronal hole. The sensitivity of these results to analysis technique is discussed.

Malanushenko, Elena V.↗

Quantifying Methane Leak Emissions by Fused Airborne Imaging Spectroscopy with in Situ Surface Mobile and Airborne Observations of a California Producing Oil Field

Methane (CH4) emission budgets remain uncertain and are projected to grow as oil and gas production from short-lived wells increases and their subsequent transport through aging gas distribution networks. Orders-of-magnitude variations in temporal, spatial, and emission scales present a key challenge to leak detection and quantification. Also, the probability distributions for large and stochastic, leaky systems such as geological reservoirs (by natural migration-seeps) and petroleum production from those reservoirs remain largely unknown, needed to address current approach limitations. The scale of many petroleum systems favors remote sensing, but the sensitivity of such systems often precludes detection of weak emissions. Consequently, an accurate evaluation requires that the relative contribution from the emission "tails" of small leaks also be quantified, which is best carried out using high-sensitivity in situ methods. Fusion of remote sensing and in situ approaches leverages complementary capabilities to address these limitations. We show results from mobile surface (AMOG) and airborne in situ (AJAX) and thermal-infrared (TIR) hyperspectral imaging spectroscopy (Mako) data applied to a producing oil field in the California Central Valley near Bakersfield. AMOG is an automobile-based mobile lab that measures 13 trace gases, aerosol size distributions and vertical profiles, 3D winds and other meteorology, and atmospheric column measurements by solar spectroscopy at highway speeds. AJAX measures 5 trace gases and 3D winds at ~140 m/s. Mako is a broad-area TIR imaging spectrometer that can discriminate multiple gases present in each pixel acquired. In situ-derived, total field emissions were 31±16 Gg/yr CH4. This was compared with Mako-derived emissions from all plumes identified across the study site. We found that super-emitters were not the dominant emissions mode and the spatial pattern of plume locations from production infrastructure was correlated to geological structures.

Leifer, Ira↗

A Broadband X-ray Imaging Spectroscopy in the 2030s: The FORCE Mission

We present the Focusing on Relativistic universe and Cosmic Evolution (FORCE) mission, the product of a JAXA/NASA collaboration. The FORCE mission will achieve 10 times higher sensitivity in the hard X-ray band in comparison to any previous hard X-ray mission. FORCE aims to be launched in the early 2030s, as a perfect hard X-ray complement to Athena. FORCE provides broadband (1-79 keV) X-ray imaging spectroscopy with high angular resolution (<15"). FORCE will be the most powerful X-ray probe for discovering obscured/hidden black holes and studying high energy particle acceleration in our Universe.

Ann H Cardiff↗